0
votes
0
replies
2
views
0
votes
3
replies
55
views
updated just now by
Mensur Dlakic
★
29k
•
written 3 hours ago by
Jon
•
0
0
votes
2
replies
281
views
written 6 days ago by
t.foskolos
•
0
840
votes
170
replies
180k
views
112 follow
updated 8 weeks ago by
Biostar
3.6k
•
written 8.6 years ago by
Istvan Albert
102k
3
votes
2
replies
125
views
updated 6 hours ago by
swbarnes2
15k
•
written 12 hours ago by
littlebioinformatician
•
0
0
votes
1
reply
137
views
2
votes
4
replies
149
views
6 hours ago by
SomeOne
▴
200
0
votes
0
replies
76
views
2
votes
2
replies
92
views
10 hours ago by
joe_genome
▴
60
0
votes
0
replies
57
views
13 hours ago by
Physalia-courses
★
2.6k
1
vote
1
reply
152
views
0
votes
1
reply
144
views
0
votes
0
replies
55
views
17 hours ago by
yu
•
0
3
votes
5
replies
381
views
updated 19 hours ago by
jianhua.mert
•
0
•
written 3 days ago by
Nasim Gandomdoust
•
0
0
votes
1
reply
97
views
0
votes
1
reply
96
views
updated 20 hours ago by
GenoMax
152k
•
written 22 hours ago by
tutorwhizzz
•
0
0
votes
0
replies
69
views
23 hours ago by
anthony.santana.703.j
▴
30
2
votes
2
replies
152
views
0
votes
0
replies
69
views
1
vote
1
reply
106
views
3
votes
2
replies
148
views
updated 1 day ago by
Maximilian Haeussler
★
1.7k
•
written 1 day ago by
npont
▴
10
0
votes
0
replies
96
views
updated 1 day ago by
GenoMax
152k
•
written 1 day ago by
mete.han.celebi
•
0
0
votes
0
replies
89
views
0
votes
0
replies
139
views
0
votes
14
replies
550
views
updated 1 day ago by
Mensur Dlakic
★
29k
•
written 2 days ago by
Jon
•
0
1
vote
1
reply
187
views
updated 2 days ago by
Mensur Dlakic
★
29k
•
written 2 days ago by
NIkita
•
0
0
votes
0
replies
119
views
1
vote
1
reply
177
views
updated 2 days ago by
Pierre Lindenbaum
166k
•
written 2 days ago by
analyst
▴
70
2
votes
6
replies
323
views
0
votes
0
replies
117
views
1
vote
3
replies
470
views
0
votes
2
replies
238
views
0
votes
1
reply
204
views
4
votes
3
replies
332
views
0
votes
1
reply
218
views
updated 4 days ago by
andres.firrincieli
3.9k
•
written 4 days ago by
henrique.mouradias
•
0
1
vote
2
replies
244
views
0
votes
1
reply
226
views
0
votes
2
replies
259
views
1 day ago by
María José
▴
10
0
votes
1
reply
353
views
0
votes
1
reply
270
views
updated 4 days ago by
andres.firrincieli
3.9k
•
written 4 days ago by
Berkan
•
0
0
votes
1
reply
241
views
2
votes
4
replies
405
views
updated 14 hours ago by
antonioggsousa
3.4k
•
written 5 days ago by
Jamie
•
0
0
votes
0
replies
222
views
5 days ago by
Cornelio
•
0
2
votes
2
replies
951
views
updated 5 days ago by
Daniel Lai
▴
10
•
written 4.8 years ago by
gmora
▴
30
2
votes
1
reply
275
views
0
votes
3
replies
383
views
0
votes
4
replies
388
views
0
votes
1
reply
615
views
0
votes
1
reply
262
views
3
votes
2
replies
359
views
5 days ago by
lessismore
★
1.4k
Recent Locations •
All
Russia, 3 minutes ago
USA, 3 minutes ago
Moscow, 4 minutes ago
United States, 7 minutes ago
United States, 12 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 12 minutes ago
France, 18 minutes ago
Recent Awards •
All
Scholar to
Mensur Dlakic
★
29k
Popular Question to
alejandro.mejiam1
▴
20
Popular Question to
sk
▴
20
Popular Question to
bio_elle
▴
10
Popular Question to
joe_genome
▴
60
Popular Question to
Jeremy Leipzig
23k
Popular Question to
questionaire
•
0
Recent Replies
Comment: Error Correction with Tadpole and BBMerge
by
Mensur Dlakic
★
29k
Not exactly an answer to your question, but it still may be useful.
If you are going to assemble with SPAdes in the end, it does error cor…
Comment: Error Correction with Tadpole and BBMerge
by
Jon
•
0
So of all of the sets that I'm working with, they are all 150x2 reads.
I have 2 sets that were done on Novaseq 6000, I believe these are…
Answer: Error Correction with Tadpole and BBMerge
by
GenoMax
152k
> Can I use BBduk for example against the reference to pull reads out that match specific species, and error correct them separately
Filte…
Comment: featureCounts -t option not working in v2.0.8?
by
atan
•
0
Unfortunately, I'm working on a managed cluster, so I can't test with the older version easily. But it's the same GTF as before. In both ca…
Answer: Bootstrapping in RNA-seq
by
swbarnes2
15k
You could try to figure out what PC2 represents. If it's something meaningful, like tissue contamination.
You could also include PC2 a…
Comment: Log2FC track Visualization in IGV
by
rfran010
★
1.6k
Yes, that is a valid and common way to generate the track.
There's also bamCompare to make the comparison in one step.
Note, with RNA-seq…
Answer: Computing ka/ks ratio for individual genes.
by
shelkmike
★
1.6k
It's better to use PAML to calculate Ka/Ks. With PAML, you can use the so-called "branch model", which allows you to calculate Ka/Ks for ea…
Comment: Log2FC track Visualization in IGV
by
SomeOne
▴
200
the bars are going Up and Down the axis, and labeled as Log2 kmt6/wt, my guess is that its based on the foldchange ?
With chatGpt i was ab…
Comment: Log2FC track Visualization in IGV
by
GenoMax
152k
From the figure legend:
> Changes in transcription for low nitrogen conditions are shown in
> purple as log2 value of the **RPKM** ratio …
Comment: PhageTerm error
by
GenoMax
152k
Is `python v.3.x` default python on your machine?
It looks like someone else had reported an identical error last year ( https://sourcefor…
Comment: Obtaining a BED/GTF from Ensembl
by
joe_genome
▴
60
I'll take a look, looking for Alu repeats specifically.
Comment: Obtaining a BED/GTF from Ensembl
by
GenoMax
152k
There is a prior solution available, if you are able to make it work (requires Perl) --> https://www.biostars.org/p/9549836/#9549985
Answer: Bootstrapping in RNA-seq
by
ATpoint
88k
Your PC1 explains 75% of variance, driven by the group separation, I would expect lots of DEGs. Rather than home-cooked approaches like boo…
Comment: Trouble Using GEO Files with Seurat
by
antonioggsousa
3.4k
I do not know if they are exactly the same, but I think they are equivalent from its description ([link](https://anndata.readthedocs.io/en/…
Traffic: 2368 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6