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BBMap will do fasta input. With ~4-5 kb contigs you should switch to using `minimap2` ([**LINK**][1]) for alignments. You can simply use th…
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I have read that Eukaryotes most difficult to classify, I can see now the issue, they have high similarity to human dna. Amoebas, such as…
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You might be interested in the [MuLE system](https://www.addgene.org/kits/mule-system/), which I've had some success with in the past. It's…
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While someone may answer, this post does not fit the theme of this forum. Please ask this question on biology stackexchange or a relevant r…
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This is an interesting study. Assuming OP has done everything right there is a reasonable hypothesis here. OP needs to prove it, with an in…
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Thanks for the link. This is good background on what the OP is 'truly' asking here. The finding of N fowleri would be probably very serious…
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There are existing specialized tools for host read removal such as
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the template is look like this:
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