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Recent Replies
Comment: Is it necessary to do genotype quality filteration after snp calling with GATK
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Pierre Lindenbaum
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see VQSR https://gatk.broadinstitute.org/hc/en-us/articles/360035531612-Variant-Quality-Score-Recalibration-VQSR and https://gatk.broadinst…
Comment: Snakemake wrapper issue
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Hi, I kind of did and kind of didn't: I stopped trying to use snakemake(
I remember that it's a lot of hustle to install pickard, maybe you…
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Hi, you can add the labels outside chart using `geom_label_repel` from `ggrepel` package.
Check out this guide
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Hi, did you solve your problem ?
I also encounter same issue but it's `wrapper:"v3.9.0/bio/picard/mergevcfs"`.
In my log file, it said:…
Comment: What does the 'E%' represent in BUSCO results?
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No worries! I found the commit with the maths too: https://gitlab.com/ezlab/busco/-/blame/master/src/busco/busco_tools/hmmer.py?page=2#L135…
Comment: What does the 'E%' represent in BUSCO results?
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林明德
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Thank you for your answer! It really helped me resolve a doubt!
Answer: What does the 'E%' represent in BUSCO results?
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Ah your edit solved this. 50 BUSCOs contain internal stop codons, indicating they might be erroneous gene models, or the genes themselves a…
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In my case, I did not see iGPU. There is only one option, Intel UHD Graphics.
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Comment: What does the 'E%' represent in BUSCO results?
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funny enough i tried the same thing (i've used BUSCO heaps times but never saw the E:! even the manual lists 'C:89.0%[S:85.8%,D:3.2%],F:6.9…
Comment: What does the 'E%' represent in BUSCO results?
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According to ChatGPT:
In BUSCO, the "E" category represents "End" or "Endof" gene fragments. These are orthologous groups for which the ge…
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I found the answer when using bcftools. Is there is a way to do this with FilterVcf?
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Those are SAM format fields. Check section 1.4 here: https://samtools.github.io/hts-specs/SAMv1.pdf
> 1:2114:12111:13792
That is part of …
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