20 minutes ago by
vanbelj
▴
40
0
votes
0
replies
8
views
0
votes
0
replies
16
views
1 hour ago by
hagl
▴
10
0
votes
4
replies
333
views
updated 1 hour ago by
pinheirofabiano
▴
10
•
written 3 days ago by
qudrat.nii
▴
10
0
votes
5
replies
227
views
19
votes
11
replies
14k
views
10 follow
2
votes
2
replies
154
views
2
votes
0
replies
70
views
0
votes
2
replies
143
views
6 hours ago by
The_PyPanda
▴
10
0
votes
0
replies
68
views
6 hours ago by
HarperReed
•
0
795
votes
167
replies
141k
views
109 follow
updated 3 months ago by
Biostar
2.7k
•
written 7.4 years ago by
Istvan Albert
100k
2
votes
3
replies
111
views
1
vote
0
replies
50
views
0
votes
0
replies
49
views
0
votes
0
replies
49
views
10 hours ago by
Nargis
•
0
0
votes
1
reply
78
views
0
votes
0
replies
46
views
12 hours ago by
turcoa1
•
0
3
votes
3
replies
177
views
0
votes
0
replies
63
views
0
votes
0
replies
74
views
0
votes
1
reply
111
views
updated 20 hours ago by
ATpoint
82k
•
written 20 hours ago by
AaronJaime
•
0
0
votes
2
replies
169
views
0
votes
2
replies
196
views
updated 18 hours ago by
Ram
43k
•
written 1 day ago by
Assa Yeroslaviz
★
1.8k
1
vote
1
reply
135
views
1
vote
5
replies
208
views
updated 1 hour ago by
bk11
★
2.4k
•
written 1 day ago by
starswillfade
▴
10
0
votes
0
replies
78
views
0
votes
0
replies
73
views
updated 19 hours ago by
Ram
43k
•
written 23 hours ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
67
views
23 hours ago by
Emily
▴
10
1
vote
0
replies
84
views
0
votes
0
replies
71
views
1 day ago by
synat.keam
▴
100
0
votes
0
replies
97
views
0
votes
1
reply
402
views
updated 1 day ago by
ginellegrenier
•
0
•
written 4 months ago by
Clayton
•
0
3
votes
4
replies
231
views
20 hours ago by
QX
•
0
2
votes
1
reply
157
views
updated 1 day ago by
Adrian Altenhoff
★
1.1k
•
written 1 day ago by
hemantcnaik
•
0
0
votes
0
replies
85
views
2
votes
4
replies
234
views
updated 19 hours ago by
Ram
43k
•
written 1 day ago by
ashaneev07
▴
20
2
votes
3
replies
198
views
updated 1 day ago by
Pierre Lindenbaum
161k
•
written 1 day ago by
analyst
▴
30
0
votes
1
reply
137
views
updated 1 day ago by
b.contreras.moreira
▴
170
•
written 1 day ago by
Broccoli
•
0
0
votes
2
replies
166
views
0
votes
1
reply
165
views
2
votes
4
replies
2.3k
views
updated 1 day ago by
ZhangYuanfeng
•
0
•
written 2.4 years ago by
Frazier Baker
•
0
0
votes
2
replies
201
views
0
votes
1
reply
167
views
updated 19 hours ago by
Ram
43k
•
written 1 day ago by
Ming Tommy Tang
★
3.9k
0
votes
4
replies
2.7k
views
updated 1 day ago by
evawillms183
•
0
•
written 8.3 years ago by
andrepleao
•
0
0
votes
0
replies
109
views
2
votes
3
replies
287
views
updated 3 days ago by
Mensur Dlakic
★
27k
•
written 4 days ago by
emmanouil.a
▴
120
0
votes
2
replies
215
views
0
votes
2
replies
199
views
updated 1 day ago by
Mensur Dlakic
★
27k
•
written 1 day ago by
biochugs
•
0
8
votes
8
replies
528
views
1
vote
8
replies
768
views
updated 1 day ago by
Pierre Lindenbaum
161k
•
written 7 days ago by
Maria
•
0
1
vote
10
replies
912
views
1 day ago by
DKA
▴
40
Recent Votes
Recent Locations •
All
College Station, TX, just now
USA, 1 minute ago
France, 3 minutes ago
France, 3 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 4 minutes ago
UCLA, 5 minutes ago
United States, 7 minutes ago
Recent Awards •
All
Popular Question to
BioinfGuru
★
1.7k
Popular Question to
vinayjrao
▴
250
Supporter to
Jalil Sharif
▴
80
Popular Question to
sil_bioinfo
▴
40
Popular Question to
sapuizait
▴
10
Recent Replies
Comment: Low mapping rate with Salmon
by
i.sudbery
19k
Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
Comment: How to convert plink files to Hapmap Format
by
bk11
★
2.4k
If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value.
https://www.b…
Comment: genome assembly records not present in assembly_summary.txt
by
sapuizait
▴
10
jesus its in the Genbank file and I was looking at the refseq! I m such a moron - thanks for pointing it out -sorry about that :(
Comment: ScRNA data question
by
bk11
★
2.4k
I wonder how the `Vlnplots` will look if you normalize the data using `NormalizeData()` function in `Seurat`. The flat line in your plot ar…
Comment: Low mapping rate with Salmon
by
GenoMax
141k
> Does that mean that the reads that are not mapped to my trascriptome are not exons/coding genes?
Reads are likely aligning in regions wh…
Comment: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
cmdcolin
★
3.8k
the gencode link is broken now but here is a back up of that blogpost on archive https://web.archive.org/web/20130618221342/http://gencodeg…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
I'll try to make the decoy file again but I remember you also told me that it is only recommended and not mandatory for running `salmon`. I…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
For doing this, should I just look at the log.out.file?
Answer: Heatmap and rna-seq
by
pinheirofabiano
▴
10
install.packages("pheatmap")
library(pheatmap)
setwd("/Users/data_analysis/results")
data <- read.table(file…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
Thanks for the link GenoMax. But I was wondering, should not alignment and mapping have a similar rate and thus be correlated? In my case I…
Answer: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
bedtools intersect \
-a <(sort -t $'\t' -k1,1 -k2,2n A.bed) \
-b <(awk '{X=250000;P=int($2);printf("%s\t%d\…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
•
0
The command lines I wrote out for you are the ones I actually used. My original reference to bedtools intersect was because I assumed the b…
Comment: ScRNA data question
by
starswillfade
▴
10
I just thought it was weird that considering each dot is a cell their expressions were all on a single line instead of being spread out lik…
Comment: ScRNA data question
by
starswillfade
▴
10
![enter image description here][1] I am already using Seurat V5 I think. I am using SCTransform as it was recommended by the seurat page. I…
Answer: genome assembly records not present in assembly_summary.txt
by
GenoMax
141k
Can you clarify what `metainfo` you are referring to?
The accession that you refer to does exist in [**GenBank assembly_summary file**][1…
Traffic: 3212 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6