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How to obtain unspliced tRNAs from FASTQ file
next-gen rna-seq unspliced trna written 3 hours ago by nkabo • 50 • updated 9 minutes ago by swbarnes2 ♦ 9.1k
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NCBI gtf contains same trasncript id for some trasncripts and giving trouble on htseqcount
assembly alignment rna-seq sequencing written 15 minutes ago by patelbhaumikn • 0
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47
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problem use htseq-count in bash script
htseq-count script written 3 hours ago by o.omidan • 10
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Creating a stable batch-corrected scRNA-Seq data with multiple datasets and multiple integrations
scrna-seq batch correction rna-seq written 41 minutes ago by hkarakurt • 100
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CNVkit intervarls questions
cnvkit written 1 hour ago by emmanouil.a • 20
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269 follow
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 4.0 years ago by Istvan Albert ♦♦ 85k • updated 1 hour ago by Shalu Jhanwar • 470
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21
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Regarding Barley genome
gene assembly genome written 1 hour ago by umeshtanwar2 • 20
3
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45
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1
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GDC TCGA LUAD dataset iCluster.group parameter
tcgabiolinks R icluster tcga dataset written 19 hours ago by up201505092 • 0 • updated 2 hours ago by igor ♦ 11k
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Calculating minor allele frequency for GnomAD VCF file
genome gnomad written 4 hours ago by Jamie Watson • 0 • updated 2 hours ago by Jeremy Leipzig ♦ 19k
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Problem with BiomaRt::useMart function Landscape Genomics
ensembl biomart landcape genomics usamart plant written 3 hours ago by simone.castellana • 0 • updated 2 hours ago by Emily_Ensembl ♦ 21k
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Problem loading data from metadata file on Cytoscape
cytoscape written 3 hours ago by Eve.Roxborough • 0
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24
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how to calculate TMB from call stats file
mutations written 3 hours ago by rotemkat • 0
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Comparative Genome Analysis vs. Comparative Genomics
comparativegenomeanalysis comparativegenomics written 3 hours ago by peifei0418 • 0
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Does the host of human coronaviruses (CoVs) genomes/sequences must be from human host? Or other animal hosts should be fine as well?
genome host covid19 sequence coronavirus written 3 hours ago by peifei0418 • 0 • updated 3 hours ago by genomax ♦ 92k
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Sort Sam file by chromosome and position in python
genome python alignment sam written 3 hours ago by hectorbaigessanchez • 0
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29
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what is the meaning of "consensus mutation"?
sequence sequencing written 4 hours ago by 2001linana • 10
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33
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How to download TCGA normal sample ?
R tcga rna-seq written 4 hours ago by najioumayma • 10
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100
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How does FastQTL deal with strand
qtl rna-seq written 9 weeks ago by Cindy • 10 • updated 4 hours ago by Biostar ♦♦ 20
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46
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Is there a reason for less IgG occupancy around the promoters of highly expressed genes?
igg chip-seq written 4 hours ago by jparker4 • 20
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RNA seq analysis ( pre-processing)
R rna-seq written 4 days ago by najioumayma • 10
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32
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PSSM files - relationship between HHBlits .MTX file and Blast .PSSM file?
alignment hhblits psi-blast written 1 day ago by harold.powell • 0
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Determine heterozygosity with GenomeScope
genomescope heterozygosity written 5 hours ago by pablo • 150
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Where to find targets.txt in GEO dataset.
R written 18 hours ago by roybatty269 • 0
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29
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Find cooccurences of factors across multiple files
gene chip-seq sequencing written 7 hours ago by tirichl • 20 • updated 6 hours ago by jordi.planells • 270
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Job: Senior Bioinformatician at Biomage
R next-gen job rna-seq written 6 hours ago by vicky • 0
3
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59
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1
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Very large fastq files from RNA-seq
rna-seq sequencing written 11 hours ago by ramyak1912 • 0 • updated 7 hours ago by i.sudbery ♦ 9.7k
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57
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expression density plot
geo gene expression omnibus rna-seq written 22 hours ago by sindhujarajavelu • 0
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Package to get full Pubmed text in R
R data mining pubmed written 9 hours ago by Bioinformatician_in_trouble • 10 • updated 7 hours ago by Jean-Karim Heriche ♦ 23k
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32
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BioMart in R retrieves multiple Entrez IDs for one Ensembl ID
R written 7 hours ago by ali.cham • 0 • updated 7 hours ago by Kevin Blighe ♦ 67k
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Why might a large number of variants fail HWE?
genome rna-seq snp written 6 days ago by srmeetd • 0 • updated 7 hours ago by i.sudbery ♦ 9.7k
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