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Does Science have readership for computational tools?
paper science peer-reviewed journal written 21 minutes ago by MCH • 10 • updated 13 minutes ago by jared.andrews07 ♦ 7.2k
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20 follow
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Tutorial: Creating Interactive Volcano Plots with R and Plot.ly
R tutorial plotly volcano plot written 4.0 years ago by steve • 2.6k • updated 51 minutes ago by jg43486 • 0
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Is it possible to supplement a gbk file with manual annotations?
genome annotation viral written 4 hours ago by robert.murphy • 10 • updated 1 hour ago by Mensur Dlakic • 6.6k
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30
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1
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Two different library preps
10x R seurat rna-seq written 2 hours ago by elizabethl • 0 • updated 1 hour ago by swbarnes2 ♦ 8.6k
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RNAseq fastqc report some failures, how to solve it?
rna-seq written 2 hours ago by lovelymaoqin • 0 • updated 2 hours ago by swbarnes2 ♦ 8.6k
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Need some help with next steps after getting fGSEA results from Microarray data.
fgsea microarray differential expression analysis written 2 hours ago by DataStoryTeller • 10
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How to plot Raster plot
R neuroscience matlab python written 2 hours ago by sidrah.maryam • 10
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129
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Number of replicates in each group in RNA seq
rna-seq written 4 weeks ago by dolphiness • 0 • updated 2 hours ago by Biostar ♦♦ 20
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7 follow
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Estimaing insert size from a pair-end library using bbmap
bbmap rna-seq written 3 hours ago by Rogerio Ribeiro • 30
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259 follow
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 3.8 years ago by Istvan Albert ♦♦ 84k • updated 4 hours ago by Shalu Jhanwar • 470
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how do I create .dat file format for mach2dat software association analysis?
dat mach2dat associationanalysis written 4 hours ago by anamaria • 100
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64
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7 follow
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Help interpreting BLAST results? (Max score/Percent. Identity/E-values)
gene genome alignment written 10 hours ago by cia • 10 • updated 4 hours ago by Mensur Dlakic • 6.6k
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How to retrieve sequences of genes list at a time from a fasta file
next-gen written 6 hours ago by evafinegan • 0
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7 follow
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Does anyone know/would be willing to give me a guide on how to do ChIP-Seq data analysis?
next-gen chip-seq written 5 hours ago by orchard4 • 10
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51
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Color code samples
R seurat rna-seq written 6 hours ago by elizabethl • 0 • updated 6 hours ago by ATpoint ♦ 38k
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1
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39
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1
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Using GNU Parallel to read arguments into a bash script
parallel gnu bash written 6 hours ago by SaltedPork • 110
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32
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MAKER SNAP .hmm file
software error written 6 hours ago by pcvgt • 0
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1
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27
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1
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Unrecognized flag in Plink2
genome snp written 7 hours ago by A.Mubashir • 0 • updated 6 hours ago by genomax ♦ 90k
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26
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PHATE Clustering Error
scrna-seq seurat phate error single cell written 7 hours ago by fouerghi20 • 0
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1
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51
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1
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Blast2GO gene ontology terms from a gene list
gene ontology written 22 hours ago by evafinegan • 0 • updated 7 hours ago by robertbio • 0
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29
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1
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MAKER gff3_merge: command not found
software error written 8 hours ago by pcvgt • 0 • updated 7 hours ago by genomax ♦ 90k
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34
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GCTA-COJO slct conceptual question
snp written 8 hours ago by brighteyes1017 • 0 • updated 8 hours ago by genomax ♦ 90k
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1
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32
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1
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pysam doesn't calculate correct nucleotide quantities from .bam file
count pysam python written 8 hours ago by vit.filippo • 50 • updated 8 hours ago by dariober ♦ 11k
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25
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How to generate dose-response matrices for drug pairs?
drug-combination drug-effect drug written 8 hours ago by carlos_marchi • 60
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findOverlapofPeaks discrepancy in peaklist vs Venn diagram
R chip-seq written 9 weeks ago by sayantani.ghoshdastidar • 0 • updated 8 hours ago by Biostar ♦♦ 20
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45
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Annotate bedfile with Transcript, Exon No & CDS
R bioconductor written 8 hours ago by mrxcm3 • 50
2
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1
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46
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6 follow
1
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How to make heatmap of log fold change for multiple conditions from RNA-seq
deseq2 rna-seq heatmap written 9 hours ago by mar77 • 20 • updated 8 hours ago by Kevin Blighe ♦ 65k
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63
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What is the format of the input file to the IGV software?
alignment rna-seq written 4 days ago by Fahimeh.6868 • 0
2
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1
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39
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1
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Grey module trait correlation in WGCNA
wgcna module correlation written 11 hours ago by christofffer • 0 • updated 9 hours ago by Kevin Blighe ♦ 65k
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How to build my resource-bundle for variant recalibrator?
resource bundle written 9 months ago by Sakhaa • 0 • updated 9 hours ago by Begonia_pavonina • 20
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