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fastq.gz goes into gz cpgz loop
rna-seq written 4 days ago by S0phia • 0
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1
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272
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1
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How to extract fasta sequences from assembled transcripts generated by Stringtie
fasta gtf file stringtie sequences written 4 months ago by seta • 920 • updated 41 minutes ago by zzqr • 0
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Is there a way to fetch genomic sequences at given coordinates without downloading fasta files?
genome python sequence R dna written 1 hour ago by ericbrenner • 0
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How do you use Biomart to get info about genes that didn't originate from Ensembl?
genome ensembl biomart written 1 hour ago by ericbrenner • 0
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Does anyone have the bait sequences for Agilent SureSelect Exomes V5 and V6?
next-gen sequence sequencing written 1 hour ago by john.markham • 0
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1
answer
136
views
1
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CNVnator output filter
filter cnv written 15 days ago by zhang248 • 20 • updated 2 hours ago by ChrisJ • 0
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3
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311
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7 follow
3
answers
Help with building bioinformatics workstation
computer hardware ecc ram workstation written 6 weeks ago by odoluca • 20 • updated 2 hours ago by LLTommy • 970
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41
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Can/should Bracken be used with metatranscriptome data?
kraken bracken metagenome metatranscriptome written 2 hours ago by kristenbeck527 • 10
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2
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96
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2
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How to merge multiple CNV results of CNVnator
ngs cnvnator cnv written 19 hours ago by ChrisJ • 0
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53
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RNASeq lane effect
lane effect normalization gene expression rna-seq written 2 hours ago by roncalli • 0
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1
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129
views
1
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What does the 'Genomic Gain' mean?
genome snp rna-seq written 17 days ago by hamza.bakkali • 0 • updated 3 hours ago by Kevin Blighe • 950
284
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15
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14k
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120 follow
15
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 9 months ago by Istvan Albert ♦♦ 73k
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207
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RNA co-expression: shall I use differential co-expression or not?
co-expression rna-seq written 8 weeks ago by sandrine.muller.research • 10 • updated 3 hours ago by Biostar ♦♦ 20
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2
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60
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2
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Bash: find duplicates based on 2 columns and keep duplicate with lowest value in a different column
duplicates bash awk written 5 hours ago by magda.meier • 20 • updated 3 hours ago by shenwei356 • 3.3k
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44
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Comparing genes expression across samples in single cell RNA sequencing.
scrna rna-seq seurat written 3 hours ago by halo22 • 90
0
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1
answer
57
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1
answer
The difference between okay.cds and okay.fasta produced by tr2aacds
remove redundancy evidentialgenes tr2aacds written 6 hours ago by xioli2013 • 0 • updated 3 hours ago by gilbert.bionet • 60
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56
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SRAtoolkit: error while running sam-dump
ncbi sra sam sratoolkit written 4 hours ago by chahatupretiiitk • 20
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3
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117
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3
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Post alignment QC of RNA-seq data
qc fastqc written 12 hours ago by Jessica_bioinfo • 10 • updated 4 hours ago by Brian Bushnell ♦ 14k
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1
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88
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1
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HtSeq count error
htseq-count rna-seq written 11 hours ago by Ron • 600
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1
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357
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1
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Advice on primer ordering for 16s + ITS sequencing
genome microbiome 16s its sequencing written 8 months ago by emericklarkin • 0 • updated 6 hours ago by samdegregori • 0
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56
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gene set enrichment analysis for continuous phenotype
R gene set enrichment analysis tools gsea written 6 hours ago by email2mrna • 0
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96
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2
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gc content file for human genome large and difficult to parse into separate chromosome files
assembly written 10 hours ago by chrisclarkson100 • 50 • updated 6 hours ago by igor • 4.5k
4
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2
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439
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2
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how is obtained the BED score values (the 5th column of the bed files) in BED files
score chip-seq bed files written 7 months ago by fusion.slope • 120 • updated 6 hours ago by augustin.le_bouquin • 0
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54
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How to calculate population size (Ne) from y-axis of Bayesian Coalescent Skyline Plot
beast bayesian skyline population size written 6 hours ago by victorv888 • 0
0
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1
answer
107
views
1
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Calculation of signal-to-noise ratio (SNR)
genome next-gen snr sequencing written 5 days ago by ram.mainali • 0 • updated 7 hours ago by Kevin Blighe • 950
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1
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98
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1
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Filtering in DNA methylation
dna methylation preprocessing filtering written 3 days ago by noorpratap.singh • 10 • updated 7 hours ago by Kevin Blighe • 950
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3
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113
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3
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Analysis ready RNA Seq repository
online repository rna-seq resource written 1 day ago by kakaru • 0 • updated 7 hours ago by igor • 4.5k
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56
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Database of homologous loop sequences.
protein structure alignment homologous protein written 7 hours ago by bibilong1111 • 0 • updated 7 hours ago by Pierre Lindenbaum ♦ 98k
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Blog: Gene expression units explained: RPM, RPKM, FPKM and TPM
gene expression blog rna-seq written 7 hours ago by Renesh • 880
8
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4
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179
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6 follow
4
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Need help reading FASTQ file
rna-seq written 1 day ago by sarmademad • 0 • updated 7 hours ago by jrj.healey • 2.3k
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