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simulating slightly deleterious mutations in humans using a gamma distribution
snp written 31 minutes ago by spiral01 • 70
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2
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23
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How do I get the strand of a read when using htslib?
htslib written 1 hour ago by Click downvote • 630 • updated 46 minutes ago by Alex Reynolds ♦ 26k
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Analysis gff3 file
genome gff3 annotation written 3.3 years ago by Stela Ribeiro • 10 • updated 53 minutes ago by Juke-34 • 1.3k
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8
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runtime error in LDhat
genome ldhat snp population genetics written 54 minutes ago by prasundutta87 • 220
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1
answer
36
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1
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How to separate a strain of MTB drug wise?
python grep sed loop awk written 3 hours ago by angelshiza • 10 • updated 1 hour ago by rizoic • 50
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14
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How to run GeneMark for detection of frameshifted genes
gene frameshifts written 1 hour ago by konstantinkul • 70
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how to set metrics file when using MarkDuplicates in Picard
software error genome picard written 1 hour ago by Yingzi Zhang • 40 • updated 1 hour ago by zx8754 ♦ 5.3k
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551
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1
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SHAPEIT error after run: x samples are included in several duos/trios
shapeit inferring haplotypes phasing snp written 13 months ago by c_barbarosie • 0 • updated 2 hours ago by chariko • 30
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(Closed) Shift label to upside in ggscatter graph
R ggscatter ggpubr written 23 hours ago by whrhkdrhs • 0 • updated 2 hours ago by zx8754 ♦ 5.3k
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116
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How to validate SNP if NCBI Genome remapping service as failed
gwas plink snp R written 24 days ago by Leonida Monaco • 20 • updated 3 hours ago by Biostar ♦♦ 20
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32
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monocle how to identify branches
monocle tool pseudotime rna-seq written 5 hours ago by hsu • 0
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40
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Determining differentially required genes between p53 WT or mutant cell lines from siRNA data and making a heatmap
R written 6 hours ago by lukewilliams22 • 0
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11 follow
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samtools: error while loading shared libraries: libbz2.so.1.0: cannot open shared object file: No such file or directory
samtools rna-seq written 14 months ago by wschrein • 20 • updated 6 hours ago by 1176423710 • 0
3
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1
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104
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1
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BSgenome.Hsapiens.UCSC.hg38 vs BSgenome.Hsapiens.NCBI.GRCh38
genome R version assembly written 16 days ago by ZheFrench • 140 • updated 7 hours ago by igor ♦ 6.8k
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ANNOVAR annotate frameshift
annovar mutation variant exonic written 8 hours ago by sugus • 20 • updated 8 hours ago by Kevin Blighe ♦ 30k
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1
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47
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1
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Plink: Understanding LD Clumping vs Pruning
clumping eqtl pruning ld plink written 1 day ago by Werewolf • 10 • updated 8 hours ago by Kevin Blighe ♦ 30k
376
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19
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29k
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173 follow
19
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News: The Biostar Handbook. A bioinformatics e-book for beginners.
tutorial news training handbook written 22 months ago by Istvan Albert ♦♦ 77k • updated 10 hours ago by RamRS ♦ 18k
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4
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294
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9 follow
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manipulating a file by R or bash?
text parsing R bash written 20 hours ago by Za • 120 • updated 10 hours ago by Chirag Parsania • 1.1k
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53
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Converting KEGG pathways to SBML with preserving compound and reaction identifiers
kgml keggtranslator stoichiometry matrix kegg sbml written 10 hours ago by Na Sed • 260
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71
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Trouble de-multiplexing single index paired-end illumina library
illumina singe index demultiplexing written 10 hours ago by caverill • 40
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5 follow
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To fetch the reads which are being partially mapped to the genome
jvarkit hisat2 star rna-seq bowtie2 written 11 hours ago by swadha • 20 • updated 11 hours ago by genomax ♦ 57k
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73
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Separate Genome into Tiers
genome written 11 hours ago by angrypigeon • 120
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93
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Job: University of Georgia Institute of Bioinformatics 2019 PhD Fellowships
phd job fellowship written 13 hours ago by Casey Bergman ♦ 17k
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1
answer
65
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1
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GC content analysis using EdgeR
rna-seq written 14 hours ago by vhelizarraga • 0 • updated 13 hours ago by h.mon ♦ 20k
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2
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97
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Time-course RNA-seq analysis in Deseq2
R rna-seq written 22 hours ago by Lisa • 300 • updated 14 hours ago by Vitis • 1.6k
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1
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63
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1
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Diploid sequences in ModelTest-NG: consensus or ambiguous sites?
next-gen diploid modeltest written 16 hours ago by CaffeSospeso • 0 • updated 14 hours ago by Vitis • 1.6k
6
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1
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186
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5 follow
1
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Sorting fq data into groups with missing barcode info?
next-gen sequencing written 6 days ago by jorja • 0 • updated 15 hours ago by Istvan Albert ♦♦ 77k
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50
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(Closed) What software can estimate gene order in a FASTA or a FASTQ file and compute metrics based on a bag-of-words paradigm?
software bag-of-words gene order written 15 hours ago by pseudomonas_bioinformatics_uk • 0
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102
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1
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Samtools view behaviour with skipped region from the reference (N in Cigar)
samtools written 18 hours ago by Bastien Hervé • 2.2k • updated 16 hours ago by Pierre Lindenbaum ♦ 113k
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Infer direction of paired end data
rna-seq written 17 hours ago by waqaskhokhar999 • 0 • updated 17 hours ago by Istvan Albert ♦♦ 77k
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