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written 11.2 years ago by
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written 5.2 years ago by
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updated 13 months ago by
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written 8.9 years ago by
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updated 4.4 years ago by
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60
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written 11.7 years ago by
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updated 3.1 years ago by
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10
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written 5.0 years ago by
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8.8 years ago by
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updated 11 months ago by
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written 11.9 years ago by
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Tutorial:
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written 3.2 years ago by
rohitsatyam102
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750
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updated 12.5 years ago by
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written 12.5 years ago by
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updated 6 months ago by
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written 10.3 years ago by
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115
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10
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written 12.7 years ago by
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updated 2.5 years ago by
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written 3.4 years ago by
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35
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75
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written 9.9 years ago by
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70
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written 12.3 years ago by
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updated 7 months ago by
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written 12.3 years ago by
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Popular Question to
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Comment: MAKER: WARNING: Could not get initialization lock. Trying Again...
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What kind of hardware are you running this on? You need to have the right kind of hardware (multiple CPU's not just cores), MPI libraries a…
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Using `bedops --intersect` and `gtf2bed` will get their common genomic space:
```
bedops --intersect <(gtf2bed < transcripts.gtf) <(gtf2be…
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```bash
# Obtain the makefile
curl -s http://data.biostarhandbook.com/make/snpcall.mk > Makefile
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make vcf
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Error me…
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> System Information: Ubuntu 22.04 (WSL2)
>
> Shell: zsh
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Did it affect the bamtofastq output file? if so how did you solve the problem?
Thanks
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You could try seeing if this fixes your issue with rtracklayer: https://support.bioconductor.org/p/p133244/
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0.60625 is 97/160 so if you have 80 individuals in your VCF that's an internal allele frequency, not gnomAD
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Yes, I was confused as well. I think the same. Maybe Annovar uses some other resources besides gnomad, but it does not make sense. Also, I …
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Thank you so much, I decided to move forward as you suggested. Initially, I thought using the most up-to-date databases and positions would…
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Something in `AGAT` should work: https://agat.readthedocs.io/en/latest/?badge=latest
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workflow {
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I see.
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bedtools intersect \
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I used Rockhopper only for bacterial genomes assembled into circular contigs or circular scaffolds.
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