0
votes
1
reply
14
views
0
votes
0
replies
10
views
0
votes
0
replies
28
views
0
votes
0
replies
35
views
0
votes
4
replies
353
views
updated 4 hours ago by
pinheirofabiano
▴
10
•
written 3 days ago by
qudrat.nii
▴
10
0
votes
5
replies
262
views
19
votes
11
replies
14k
views
10 follow
2
votes
2
replies
169
views
3
votes
0
replies
79
views
0
votes
2
replies
150
views
8 hours ago by
The_PyPanda
▴
10
0
votes
0
replies
74
views
9 hours ago by
HarperReed
•
0
3
votes
3
replies
134
views
1
vote
0
replies
53
views
0
votes
0
replies
52
views
12 hours ago by
SineWave
•
0
0
votes
0
replies
53
views
0
votes
1
reply
80
views
0
votes
0
replies
51
views
14 hours ago by
turcoa1
•
0
3
votes
3
replies
180
views
0
votes
0
replies
66
views
0
votes
0
replies
77
views
0
votes
1
reply
115
views
updated 22 hours ago by
ATpoint
82k
•
written 23 hours ago by
AaronJaime
•
0
0
votes
2
replies
171
views
0
votes
2
replies
200
views
updated 20 hours ago by
Ram
43k
•
written 1 day ago by
Assa Yeroslaviz
★
1.8k
1
vote
1
reply
137
views
1
vote
5
replies
227
views
updated 3 hours ago by
bk11
★
2.4k
•
written 1 day ago by
starswillfade
▴
10
0
votes
0
replies
75
views
updated 22 hours ago by
Ram
43k
•
written 1 day ago by
carlopecoraro2
★
2.5k
3
votes
4
replies
235
views
23 hours ago by
QX
•
0
2
votes
4
replies
237
views
updated 22 hours ago by
Ram
43k
•
written 1 day ago by
ashaneev07
▴
20
0
votes
2
replies
168
views
0
votes
2
replies
208
views
2
votes
2
replies
186
views
updated 55 minutes ago by
BioinfGuru
★
1.7k
•
written 1 day ago by
Ming Tommy Tang
★
3.9k
0
votes
2
replies
218
views
0
votes
0
replies
112
views
updated 22 hours ago by
Ram
43k
•
written 2 days ago by
David Langenberger
11k
0
votes
11
replies
475
views
2
votes
5
replies
278
views
8
votes
16
replies
774
views
2
votes
3
replies
318
views
updated 5 hours ago by
dsull
★
5.8k
•
written 17 days ago by
javanokendo
▴
60
0
votes
7
replies
263
views
4
votes
2
replies
367
views
updated 18 hours ago by
shalespringer
•
0
•
written 11 weeks ago by
Phenylananin
▴
20
2
votes
6
replies
3.6k
views
updated 22 hours ago by
ATpoint
82k
•
written 3.9 years ago by
grayapply2009
▴
280
10
votes
6
replies
9.8k
views
6 follow
updated 9 hours ago by
Antonio R. Franco
★
5.1k
•
written 6.0 years ago by
williamsbrian5064
▴
510
Recent Votes
Recent Locations •
All
Brazil, 2 minutes ago
China, 3 minutes ago
Stony Brook University, NY, 4 minutes ago
Canada, 4 minutes ago
United States, 5 minutes ago
United States, 6 minutes ago
Sweden, 6 minutes ago
Recent Awards •
All
Popular Question to
chaco001
▴
40
Commentator to
GenoMax
141k
Popular Question to
rheab1230
▴
140
Popular Question to
BioinfGuru
★
1.7k
Popular Question to
vinayjrao
▴
250
Supporter to
Jalil Sharif
▴
80
Recent Replies
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
by
ATpoint
82k
You can make each process use a dedicated environment, see https://www.nextflow.io/docs/latest/conda.html#use-existing-conda-environments
…
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
BioinfGuru
★
1.7k
Hi,
Just thought I'd share this code snippet here for when each file contains multiple samples. I tried using lapply (as suggested by Ram)…
Comment: Low mapping rate with Salmon
by
i.sudbery
19k
Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
Comment: How to convert plink files to Hapmap Format
by
bk11
★
2.4k
If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value.
https://www.b…
Comment: genome assembly records not present in assembly_summary.txt
by
sapuizait
▴
10
jesus its in the Genbank file and I was looking at the refseq! I m such a moron - thanks for pointing it out -sorry about that :(
Comment: ScRNA data question
by
bk11
★
2.4k
I wonder how the `Vlnplots` will look if you normalize the data using `NormalizeData()` function in `Seurat`. The flat line in your plot ar…
Comment: Low mapping rate with Salmon
by
GenoMax
141k
> Does that mean that the reads that are not mapped to my trascriptome are not exons/coding genes?
Reads are likely aligning in regions wh…
Comment: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
cmdcolin
★
3.8k
the gencode link is broken now but here is a back up of that blogpost on archive https://web.archive.org/web/20130618221342/http://gencodeg…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
I'll try to make the decoy file again but I remember you also told me that it is only recommended and not mandatory for running `salmon`. I…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
For doing this, should I just look at the log.out.file?
Answer: Heatmap and rna-seq
by
pinheirofabiano
▴
10
install.packages("pheatmap")
library(pheatmap)
setwd("/Users/data_analysis/results")
data <- read.table(file…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
Thanks for the link GenoMax. But I was wondering, should not alignment and mapping have a similar rate and thus be correlated? In my case I…
Answer: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
bedtools intersect \
-a <(sort -t $'\t' -k1,1 -k2,2n A.bed) \
-b <(awk '{X=250000;P=int($2);printf("%s\t%d\…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
•
0
The command lines I wrote out for you are the ones I actually used. My original reference to bedtools intersect was because I assumed the b…
Comment: ScRNA data question
by
starswillfade
▴
10
I just thought it was weird that considering each dot is a cell their expressions were all on a single line instead of being spread out lik…
Traffic: 3923 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6