updated 5 days ago by
Ram
40k
•
written 5 days ago by
oduduabasi.isaiah
•
0
0
votes
1
reply
166
views
3
votes
2
replies
198
views
updated 4 days ago by
Basti
★
1.7k
•
written 5 days ago by
epianalysis
•
0
0
votes
0
replies
111
views
5 days ago by
PeterC_NCBI
▴
330
1
vote
3
replies
244
views
3
votes
4
replies
221
views
updated 5 days ago by
LChart
3.4k
•
written 5 days ago by
_quantum_girl_
▴
10
1
vote
4
replies
278
views
0
votes
1
reply
150
views
0
votes
1
reply
168
views
0
votes
2
replies
195
views
updated 5 days ago by
Alex Reynolds
35k
•
written 5 days ago by
Carrie
•
0
7
votes
7
replies
390
views
updated 4 days ago by
jared.andrews07
★
15k
•
written 5 days ago by
Chris
▴
200
2
votes
6
replies
310
views
3 days ago by
aminijavad4
▴
10
0
votes
0
replies
122
views
5 days ago by
Fabio_bie88
•
0
2
votes
0
replies
161
views
5 days ago by
Ben_Ensembl
★
2.3k
0
votes
1
reply
1.7k
views
updated 5 days ago by
Ram
40k
•
written 7.3 years ago by
gerrychang1985
▴
40
3
votes
14
replies
1.9k
views
10 follow
updated 3 days ago by
Joe
21k
•
written 2.4 years ago by
hannahcheyenna
•
0
1
vote
1
reply
236
views
0
votes
6
replies
282
views
4 days ago by
biology_inform
▴
40
0
votes
1
reply
123
views
2
votes
9
replies
483
views
updated 4 days ago by
svp
▴
590
•
written 5 days ago by
smrutimayipanda
▴
20
0
votes
0
replies
115
views
0
votes
1
reply
242
views
1
vote
2
replies
157
views
1
vote
9
replies
389
views
3 days ago by
nikhil
▴
20
1
vote
3
replies
422
views
0
votes
0
replies
113
views
2
votes
4
replies
272
views
5 days ago by
camillab.
▴
140
0
votes
4
replies
346
views
updated 6 days ago by
Kevin Blighe
86k
•
written 8 days ago by
shakyaram079
•
0
2
votes
5
replies
312
views
updated 5 days ago by
Kevin Blighe
86k
•
written 7 days ago by
Nicolas
•
0
0
votes
4
replies
731
views
updated 6 days ago by
chrchang523
10k
•
written 21 days ago by
curious
▴
730
1
vote
4
replies
265
views
5 days ago by
Mo
▴
40
1
vote
5
replies
293
views
13
votes
10
replies
667
views
8 follow
3
votes
4
replies
300
views
0
votes
0
replies
113
views
6 days ago by
carlopecoraro2
★
2.4k
3
votes
2
replies
384
views
0
votes
1
reply
207
views
updated 4 days ago by
barslmn
★
1.8k
•
written 7 days ago by
smrutimayipanda
▴
20
4
votes
6
replies
377
views
2
votes
4
replies
355
views
1
vote
5
replies
490
views
0
votes
0
replies
152
views
2
votes
4
replies
305
views
0
votes
0
replies
159
views
updated 7 days ago by
4galaxy77
2.8k
•
written 7 days ago by
shakyaram079
•
0
0
votes
2
replies
279
views
1
vote
2
replies
258
views
updated 5 days ago by
Zhenyu Zhang
▴
980
•
written 8 days ago by
Tahsin
•
0
0
votes
0
replies
163
views
updated 8 days ago by
Ram
40k
•
written 8 days ago by
Ahmed.waraky
▴
10
1
vote
3
replies
366
views
updated 8 days ago by
Zhenyu Zhang
▴
980
•
written 10 days ago by
Mo
•
0
0
votes
7
replies
526
views
1
vote
3
replies
284
views
2
votes
5
replies
351
views
0
votes
1
reply
191
views
Recent Votes
Recent Locations •
All
China, 1 minute ago
Seattle, WA USA, 9 minutes ago
United States, 9 minutes ago
Thailand, 16 minutes ago
United States, 29 minutes ago
United States, 33 minutes ago
United States, 47 minutes ago
Recent Awards •
All
Commentator to
dsull
★
4.8k
Popular Question to
natasha.sernova
★
3.9k
Popular Question to
ntsopoul
▴
50
Teacher to
benformatics
3.8k
Popular Question to
iislam
•
0
Recent Replies
Comment: bedtools intersect by position & stand not working even with common regions
by
rfran010
▴
830
are you sure bedtools can handle the non-standard location of strand information?
Answer: Getting the overlap between two GTF files
by
rfran010
▴
830
Maybe somebody knows something I don't, but I feel like bedtools should be able to handle your gtf files directly.
If it's not done alre…
Answer: vcf.gz to vcf
by
Mark
★
1.3k
As the error says, the file is not compressed. In linux the file extension is essentially optional. The file could be named `my.vcf.txt` ye…
Answer: Search RCSB with a list of protein names?
by
Jiyao Wang
▴
340
You can use NCBI esearch to search the protein names against the structure database to get the PDB IDs, then retrieve the structures.
Answer: How to get ncol = nrow?
by
Mark
★
1.3k
Without your actual data, it's hard to assist. I think what you're asking is 'how do I rename the rows of my dataframe(s)'.
Taking the …
Comment: MAKER: WARNING: Could not get initialization lock. Trying Again...
by
GenoMax
134k
What kind of hardware are you running this on? You need to have the right kind of hardware (multiple CPU's not just cores), MPI libraries a…
Answer: Getting the overlap between two GTF files
by
Alex Reynolds
35k
Using `bedops --intersect` and `gtf2bed` will get their common genomic space:
```
bedops --intersect <(gtf2bed < transcripts.gtf) <(gtf2be…
Comment: Encountering Error while Running 'make vcf' in Biostar Handbook
by
Tully
•
0
```bash
# Obtain the makefile
curl -s http://data.biostarhandbook.com/make/snpcall.mk > Makefile
# Run the makefile
make vcf
```
Error me…
Comment: Encountering Error while Running 'make vcf' in Biostar Handbook
by
Tully
•
0
> System Information: Ubuntu 22.04 (WSL2)
>
> Shell: zsh
>
> Installation Verification: Yes, doctor.py OK
[1]: https://www.biostarhand…
Comment: Retrieve The Reads And Fastq From Bam File
by
Reem
•
0
Did it affect the bamtofastq output file? if so how did you solve the problem?
Thanks
Answer: How to import bigwig files into igvR
by
Trivas
★
1.5k
You could try seeing if this fixes your issue with rtracklayer: https://support.bioconductor.org/p/p133244/
Comment: Weirdness in annotation (missing allele frequencies)
by
Jeremy Leipzig
21k
0.60625 is 97/160 so if you have 80 individuals in your VCF that's an internal allele frequency, not gnomAD
Comment: Weirdness in annotation (missing allele frequencies)
by
Can Abdullah
•
0
Yes, I was confused as well. I think the same. Maybe Annovar uses some other resources besides gnomad, but it does not make sense. Also, I …
Comment: Weirdness in annotation (missing allele frequencies)
by
Can Abdullah
•
0
Thank you so much, I decided to move forward as you suggested. Initially, I thought using the most up-to-date databases and positions would…
Comment: Getting the overlap between two GTF files
by
GenoMax
134k
Something in `AGAT` should work: https://agat.readthedocs.io/en/latest/?badge=latest
Traffic: 1177 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6