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SeqCap kits are discontinued. If you don't find the said file your will need to email Roche Support per this page: https://sequencing.roche…
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UCSC maintains a list of exome probe sets and targets. You could check there:
https://hgdownload.soe.ucsc.edu/gbdb/hg19/exomeProbesets/
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Yes, I found some similar ideas on biostar repository. So you think the authors have done something wrong? And I should only consider CPM?
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Did you check where the `features.tsv.gz` file had Gene IDs or Ensembl IDs?
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TPM is irrelevant for miRNA-seq; CPM works fine.
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