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187 results • Page
2 of 4
Sort: Views
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Views
Votes
Replies
4
votes
6
replies
357
views
bwa mem hangs after a few thousand reads
bwa-mem
alignment
bwa
calling
variant
1 day ago by
cee28
▴ 30
0
votes
1
reply
344
views
How to use conumee segment mean for gistic input
genomics
gistic
NGS
methylation
conumee
updated 1 day ago by
sativus
▴ 10 • written 14 months ago by
Thind amarinder
▴ 340
0
votes
3
replies
344
views
Alternatives to Music2 for rnaseq deconvolution without disease scRNA dataset
scRNA
deconvolution
Music
Music2
bulk
updated 6 days ago by
ATpoint
78k • written 6 days ago by
manuelmourato25
• 0
0
votes
1
reply
341
views
FVA on Sybil
R
Sybil
metabolic
fba
fva
updated 2 days ago by
Thomas
• 0 • written 22 months ago by
isM15
• 0
1
vote
6
replies
340
views
Discrepancy in total number of bases in trimmed read1 and read2 files after BBDuk
bbduk
2 days ago by
CTLong
▴ 20
0
votes
5
replies
339
views
How to deeply sequence long inserts
NGS
phage
read
display
Long
updated 2 days ago by
GenoMax
136k • written 2 days ago by
Ryan
• 0
0
votes
0
replies
331
views
Job:
Postdoctoral Researcher in Alzheimer's disease Genetics, Multi-Omics, and Imaging Biomarkers, St Louis, MO, USA
Multi-Omics
Imaging
Alzheimer
Genetics
3 days ago by
belloy
• 0
0
votes
7
replies
328
views
snp database using annotation
database
gwas
snp
annotation
4 days ago by
sskimvd
• 0
2
votes
4
replies
323
views
Should SMART-seq2 data be deduplicated in STAR?
SMART-seq2
4 days ago by
anlinli.napert
• 0
0
votes
3
replies
322
views
subset a bam file
bam
pysam
NGS
samtools
updated 5 days ago by
GenoMax
136k • written 6 days ago by
Ming
• 0
4
votes
7
replies
322
views
Tools or R / Python packages to perfom ML models
Python
machine-learning
R
transcriptomics
updated just now by
Matthias Zepper
4.2k • written 1 day ago by
sil_bioinfo
▴ 30
1
vote
5
replies
322
views
How can I map coordinates between two strains of yeast?
coordinates
yeast
genome
mapping
fasta
6 hours ago by
Jimmy
▴ 10
3
votes
2
replies
321
views
BBtools bug in reporting the number of substitutions in the console output, it seems to report insanely high rates of heterozygosity
SNP
bbtools
updated 17 hours ago by
harold.smith.tarheel
★ 4.9k • written 22 hours ago by
Axzd
▴ 50
3
votes
5
replies
317
views
scRNA-seq: Consistent low number of cells and low fraction reads across the samples
scRNA-seq
cells
mRNA
expression
gene
updated 1 hour ago by
rpolicastro
12k • written 1 day ago by
newbee
▴ 40
0
votes
2
replies
315
views
Help doing differential expression analysis -experimental design and gProfiler TF interpretation-
gProfiler
mRNA
Differential-expression
TCGA
updated 2 days ago by
rajabolacuan
• 0 • written 9 days ago by
Camilo Andres
▴ 40
0
votes
5
replies
308
views
HTseq reports missing attribute name
htseq
updated 22 hours ago by
Istvan Albert
99k • written 3 days ago by
Bjorn
• 0
0
votes
3
replies
302
views
Annovar - Annotated file cells show string
annovar
6 days ago by
Roshan
• 0
3
votes
4
replies
300
views
Plotting a pvalue threshold for an FDR corrected pvalue <.05 when thats not present in R
FDR
volcano
plotting
R
plot
updated 2 days ago by
Nitin Narwade
★ 1.5k • written 2 days ago by
RNAseqer
▴ 250
0
votes
3
replies
300
views
R ComplexHeatmap - Dividing Column Annotation into Distinct Y-Axis Scales
R
complexheatmap
updated 2 days ago by
jv
★ 1.2k • written 8 days ago by
TC_Chang
▴ 10
2
votes
3
replies
297
views
DEseq2 input
DEseq2
updated 3 days ago by
ATpoint
78k • written 3 days ago by
r.shiasi3897
▴ 10
0
votes
4
replies
297
views
CHIPSEQ : Cut AND Run , DiffBind Parameters
Cut-Run
DiffBind
ChIP-seq
1 day ago by
DINESHR
• 0
0
votes
6
replies
292
views
I made an error when using metawrap to binning
metagenome
binning
metawrap
3 days ago by
alice005201314
• 0
0
votes
2
replies
287
views
Find Genes in Homer Analysis that have the enriched Motif
single
ORA
nucleus
mRNA
Homer
3 days ago by
je71xusa
• 0
4
votes
2
replies
273
views
Excel Pasting Question
Excel
updated 6 days ago by
Pierre Lindenbaum
158k • written 6 days ago by
Bweil2
▴ 10
0
votes
2
replies
272
views
Use of IDR after running MACS3 for ATAC-seq data
ATAC-seq
MACS2
MACS3
5 days ago by
Orange
▴ 10
6
votes
3
replies
271
views
BBDuk error: with these 4 lines....
BBDUK
trimming
java
3 days ago by
blackadder
▴ 30
1
vote
4
replies
270
views
Bowtie mapping for single_end read
bowtie
2 days ago by
Rita
• 0
4
votes
7
replies
268
views
regarding blast result interpretation
blast
updated 1 day ago by
dthorbur
▴ 880 • written 2 days ago by
Raman
• 0
0
votes
4
replies
267
views
Species coverage in the NCBI protein NR database ?
NR
updated 3 days ago by
Istvan Albert
99k • written 4 days ago by
HERMAN
▴ 10
5
votes
3
replies
267
views
SPAdes error: finished abnormally, OS return value: 21
SPAdes
updated 2 days ago by
Brian Bushnell
19k • written 3 days ago by
jiyoung
▴ 20
1
vote
1
reply
266
views
Forum:
want to work in open source project/project in bioinformatics
bioinformatics
project
updated 5 days ago by
Matthias Zepper
4.2k • written 5 days ago by
Afeef
• 0
1
vote
2
replies
263
views
Indexing by bowtie2 but aligning with STAR
STAR
mm10
Bowtie2
Alignment
Index
5 days ago by
Anojan
• 0
0
votes
3
replies
262
views
Viral genes not showing up in combined mouse+virus alignment
RNAseq
1 day ago by
cook.675
▴ 210
3
votes
2
replies
258
views
Mapping quality in `vg giraffe`
vg
1 day ago by
Wenhai
• 0
1
vote
3
replies
258
views
Identify clusters of populations based on gene expression
Seq
Single
cell
RNA
updated 2 days ago by
Nitin Narwade
★ 1.5k • written 3 days ago by
Bine
▴ 50
0
votes
1
reply
254
views
Diferences between TCGAbiolinks and cBioportal
R
TCGAbiolinks
cBioportal
updated 3 days ago by
Zhenyu Zhang
★ 1.1k • written 8 days ago by
jomagrax
▴ 40
0
votes
2
replies
250
views
Can FPKM be used to create bar graphs for DEGs?
RNA-seq
18 hours ago by
junli1988
• 0
0
votes
1
reply
249
views
issue in RNA -seq analysis
NGS
RNA-Seq
updated 6 days ago by
GenoMax
136k • written 6 days ago by
subhiksha
• 0
0
votes
1
reply
249
views
Gene Ontology enrichment with BINGO and ClueGO
BINGO
Cytoscape
ClueGO
Gene
Ontology
updated 21 hours ago by
Scooter
▴ 180 • written 14 days ago by
David R
▴ 20
5
votes
2
replies
246
views
RNA Contamination Tool for Developing Cell Samples
contamination
scRNA
quality
RNA
SoupX
6 days ago by
Rafael Soler
★ 1.2k
0
votes
1
reply
245
views
MinKNOW software installation doubt for MinION Nanopore sequencing
MinKNOW
MinION
Nanopore
updated 6 days ago by
GenoMax
136k • written 6 days ago by
Soumajit
▴ 40
1
vote
2
replies
241
views
Best practices for unstranded sequences in featureCounts
featurecounts
overlapping
unstranded
3 days ago by
Enrique
• 0
3
votes
4
replies
239
views
Is there a need to batch correct FPKM or TPM values for within sample comparison
Batch
correction
10 hours ago by
CTLong
▴ 20
2
votes
1
reply
239
views
EnhancedVolcano underrepresenting DEGs
R
updated 2 days ago by
Kevin Blighe
86k • written 4 days ago by
jabbari.parnian
▴ 30
0
votes
3
replies
233
views
merged rs number information
merged
dbsnp
3 days ago by
sskimvd
• 0
0
votes
0
replies
227
views
The number of variations in the pan-genome is reduced compared to the variations in the input VCF file
vg
6 days ago by
Wenke
• 0
0
votes
4
replies
225
views
Making multiple box plots with relative abundance in R
R
Boxplots
1 day ago by
ohtang7
▴ 40
1
vote
2
replies
224
views
Comparing 3 Data Sets using DeSeq and Heatmaps
DeSeq
Normalization
2 days ago by
harter-ainsworth.izaak
• 0
0
votes
2
replies
222
views
using RSEM with non Trinity assembly
SPAdes
Trinity
RSEM
3 days ago by
jen
• 0
0
votes
1
reply
217
views
htShinyExample-5.3 - not working
htShiny
Oncoprint
InteractiveComplexHeatmap
updated 1 day ago by
Ram
41k • written 6 days ago by
bioinfo
▴ 60
187 results • Page
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Thank you. I asked a stupid question.
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