Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
1,000 results • Page
4 of 20
Sort: Rank
Rank
Views
Votes
Replies
5
votes
5
replies
291
views
Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent
EGSEA
6 days ago by
Chris
▴ 280
0
votes
2
replies
216
views
Differentail gene expression results
differential
expression
gene
rna-seq
Deseq2
updated 5 days ago by
swbarnes2
14k • written 7 days ago by
ahmad.sajad4541
• 0
1
vote
9
replies
360
views
UMI-Tools knee-method has great influence on the results of white list
single-cell
whitelist
UMI
RNA
UMI-Tools
updated 3 days ago by
i.sudbery
19k • written 7 days ago by
Assa Yeroslaviz
★ 1.8k
1
vote
1
reply
168
views
student
epitranscriptomics
updated 7 days ago by
ATpoint
82k • written 7 days ago by
useriwa
• 0
0
votes
0
replies
113
views
Imputation of missing genotypes
panel
beagle
imputation
7 days ago by
analyst
▴ 50
0
votes
3
replies
178
views
trying to count a pattern in my fastq file using bbduk
java
bbduk
bbmap
fastq
updated 6 days ago by
GenoMax
142k • written 7 days ago by
Assa Yeroslaviz
★ 1.8k
7
votes
1
reply
178
views
Tutorial:
removeBatchEffect explained using base R linear models
limma
effects
batch
removebatcheffects
updated 7 days ago by
dariober
14k • written 7 days ago by
nhaus
▴ 360
2
votes
2
replies
179
views
Is therer any suggestions on mapping rate of WGBS data?
mapping
read
alignment
WGBS
6 days ago by
Zeng Jingyu
▴ 60
1
vote
2
replies
265
views
News:
We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering
Spatial-transcriptomics
updated 7 days ago by
Weiwen
• 0 • written 8 days ago by
MICOS
▴ 10
0
votes
4
replies
282
views
Correlation Analysis
statistics
methylation
NGS
expression
3 days ago by
Researcher
▴ 30
1
vote
2
replies
181
views
Repeated testing/data mining in RNA Seq
repeated
RNA-Seq
mining
testing
data
6 days ago by
robert.flynn.21
• 0
1
vote
1
reply
220
views
Tool:
Converting Nebula Genomics Data to 23andMe Format
23andMe
Nebula
updated 7 days ago by
Michael
54k • written 7 days ago by
Guillermo
• 0
1
vote
5
replies
348
views
Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, Complexity, and Use Cases
fmindex
bwt
updated 6 days ago by
Michael
54k • written 7 days ago by
qwertyuiop26
• 0
0
votes
1
reply
180
views
What is the proper way to identify the cell types of scRNAseq cluster?
scRNAseq
updated 7 days ago by
ATpoint
82k • written 7 days ago by
MAPK2
▴ 40
0
votes
2
replies
273
views
Job:
Bioinformatics Analyst - Laboratory Medicine and Pathology
job
updated 7 days ago by
Xiaofen
• 0 • written 7 days ago by
toddknutson
▴ 60
0
votes
1
reply
137
views
Seeking Guidance on Identifying Mutations in DARs from ATAC Data in Cancer Genomes
Genomics
Cancer-Research
ATAC-seq
updated 14 hours ago by
Ram
43k • written 7 days ago by
David
• 0
2
votes
2
replies
183
views
Where to get the following bed file?
WES
bed
reference
file
updated 7 days ago by
GenoMax
142k • written 7 days ago by
wyuan37
• 0
0
votes
0
replies
116
views
Get Paired TCRa/b from MIXCR
python
r
mixcr
tcr_seq
7 days ago by
Scott McKay
▴ 30
0
votes
0
replies
108
views
Cellphonedb results
cpdb
visulization
cellphonedb
7 days ago by
piotto
▴ 20
0
votes
0
replies
143
views
Job:
Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
Genomics
Alzheimer
multiomics
neuroimaging
7 days ago by
belloy
• 0
1
vote
3
replies
259
views
How to compute TPM normalized values for TCGA miRNA data?
TCGA
normalization
TPM
miRNA
updated 7 days ago by
swbarnes2
14k • written 7 days ago by
Ngrin
• 0
1
vote
6
replies
707
views
anRichment is missing
WGCNA
anRichment
updated 7 days ago by
GenoMax
142k • written 6 months ago by
michael.flower.14
▴ 180
1
vote
1
reply
209
views
Gene ontology and homologs
gene-ontology
updated 7 days ago by
geneontologyhelp
▴ 400 • written 8 days ago by
beshka194
• 0
1
vote
2
replies
241
views
error in R code: Error in fit_avlr(...), : wn incorrectly formatted
R
updated 7 days ago by
zx8754
11k • written 8 days ago by
snajafy
• 0
0
votes
0
replies
117
views
Cox Model with interaction item interpretation
Cox
7 days ago by
Bine
▴ 60
0
votes
0
replies
106
views
how to downlad slices of CRAM fro ICGC ARGO
icgc
samtools
cram
5 days ago by
Javier
• 0
1
vote
7
replies
511
views
Question regarding WGCNA
WGCNA
Network-construction
4 days ago by
deepak
• 0
0
votes
0
replies
108
views
vdjtools
vdjtools
7 days ago by
yueli7
▴ 250
2
votes
0
replies
159
views
Herald:
The Biostar Herald for Monday, May 06, 2024
herald
7 days ago by
Biostar
2.7k
0
votes
1
reply
291
views
16S rRNA microbiome differential abundance analysis with DESeq2 finds same microbial Genus in both groups.
microbiome
16S
DESeq2
updated 7 days ago by
andres.firrincieli
3.6k • written 8 days ago by
Antonio
• 0
0
votes
0
replies
119
views
Error while loading model of Spatial data deconvolution using cell2location
Python
cell2location
updated 8 days ago by
Ram
43k • written 8 days ago by
sidrah.maryam
▴ 50
0
votes
0
replies
105
views
Normalizing AMR gene count data
abundance
RGI
updated 8 days ago by
Ram
43k • written 8 days ago by
arshad1292
▴ 100
1
vote
0
replies
135
views
Help with VG Toolkit: VCF Output is Empty
vg
updated 8 days ago by
Pierre Lindenbaum
161k • written 8 days ago by
sarumonsus
▴ 10
0
votes
0
replies
124
views
How to implement an IGV to streamlit app?
python
streamlit
igv
8 days ago by
avigail.shnaider
• 0
1
vote
5
replies
334
views
install.packages("imudata") - package ‘imudata’ is not available for this version of R
r
updated 8 days ago by
Ram
43k • written 8 days ago by
snajafy
• 0
0
votes
3
replies
335
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so the model cannot be fit as specified.
DESeq2
17 hours ago by
mropri
▴ 150
0
votes
1
reply
310
views
DMRcate ranges liftover hg19 to hg38
DMRcate
Liftover
DMR
Methylation
annotation
updated 8 days ago by
aaron.stevens
• 0 • written 3 months ago by
sativus
▴ 20
2
votes
2
replies
243
views
STRING-DB API can't find my protein but I can find it when I go to the STRING-DB website directly
STRING-DB
protein
STRING-DB-API
8 days ago by
brandon
• 0
0
votes
0
replies
133
views
Mitogenomes gap closure and making circular genome
gapclosure
Mitogenomes
validation
circulargenome
8 days ago by
KHURRAM SHAHZAD
• 0
3
votes
6
replies
470
views
install package: package ‘gmwm’ is not available for this version of R
r
updated 1 day ago by
Pine
▴ 20 • written 8 days ago by
snajafy
• 0
0
votes
0
replies
122
views
Looking for phytopathogenic, Nitrogen-Fixing, and Growth-Promoting databases for Metagenomic Analysis
Bacteria
Metagenomics
Database
8 days ago by
Christopher
• 0
4
votes
1
reply
248
views
LD-prune variants while maintaining a list of SNPs
snp
vcf
plink
filtering
independent
updated 8 days ago by
zx8754
11k • written 9 days ago by
Jautis
▴ 560
2
votes
2
replies
344
views
Association study using SNP data
Association
Allele
Parentage
SNP
8 days ago by
drajangirija
• 0
0
votes
0
replies
117
views
News:
Online course: Bioinformatic analysis of transposable elements
GenomeAssembly
Transcriptomics
TransposableElements
ManualCuration
9 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
123
views
Clarification on StringTie's `--merge` parameters
stringtie
stringtie-merge
9 days ago by
DGTool
• 0
2
votes
3
replies
318
views
Problem with Seurat package in PercentageFeatureSet function
cell
single
updated 4 days ago by
bk11
★ 2.4k • written 9 days ago by
Yoosef
▴ 60
0
votes
1
reply
622
views
Job:
Seeking Bioinformatics/Drug Design Opportunities - PhD in Pharmacology with Experience in RNA-seq, CADD & Deep Learning Molecular Generation
search
job
updated 9 days ago by
GenoMax
142k • written 9 days ago by
tulip
• 0
3
votes
4
replies
437
views
Design matrix Differential expression analysis
RNA-seq
Differential-expression
updated 7 days ago by
Gordon Smyth
★ 7.2k • written 10 days ago by
SHN
▴ 40
4
votes
2
replies
272
views
GRCh38.gmap file
gnomix
gmap
9 days ago by
lorena9132
▴ 10
2
votes
3
replies
837
views
Issues with Mixture file when using CIBERSORTx
Deconvolution
CIBERSORTx
updated 9 days ago by
vjanve
• 0 • written 7 months ago by
mateomejias
• 0
1,000 results • Page
4 of 20
Recent Votes
Comment: Help with IGV abbreviation
A: How to get read counts on transcript level using featurecounts?
Answer: Vcf file sorting
Answer: How to interpret infinite odds ratio?
Answer: Is there any way to modify this pie chart ?
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred
A: How can I convert -log10 (p-value) to p-value?
Recent Locations •
All
Oviedo,
just now
South Korea,
just now
Brazil,
1 minute ago
UK,
1 minute ago
Czechia,
1 minute ago
Italy,
1 minute ago
Netherlands,
1 minute ago
Recent Awards •
All
Popular Question
to
nhaus
▴ 360
Popular Question
to
sarahmanderni
▴ 100
Popular Question
to
O.rka
▴ 720
Popular Question
to
jiyoung
▴ 20
Autobiographer
to
Jeol
▴ 20
Popular Question
to
Pegasus
▴ 100
Popular Question
to
RNAseqer
▴ 270
Recent Replies
Comment: How to access GWAVA software of data
by
GenoMax
142k
Please email the author (grsr at ebi.ac.uk) and let them know that the link above is not available.
Comment: CNVKIT - unable to produce scatter and diagram pdfs
by
Anitha
• 0
The normal samples is pooled into single reference for cohort. In this I have a doubt, here the normal sample referred as sample which took…
Comment: CNVkit for somatic copy number detection
by
Anitha
• 0
The normal samples is pooled into single reference for cohort. In this I have a doubt, here the normal sample referred as sample which took…
Comment: CNVkit for somatic copy number detection
by
Anitha
• 0
The normal samples is pooled into single reference for cohort. In this I have a doubt, here the normal sample referred as sample which took…
Answer: Overlapping Ranges within Granges object
by
ATpoint
82k
There is no one-hit function in GenomicRanges, but you can stick something together using a combination of `findOverlaps` to first find ove…
Comment: Galaxy StringTie error
by
trkfs
• 0
Hi, I did not encounter any " \ - " characters in the fastq input files, and it doesn't seem to be present in any other files either. Thank…
Comment: How to interpret infinite odds ratio?
by
Lukas
• 0
Thanks you for your answer. But according that links interpretation of inf odds ratio is up to hypothesis of the researcher.So my solution …
Comment: How to access GWAVA software of data
by
nonaddldy
▴ 10
Not found in https://ftp.sanger.ac.uk/resources/software/gwava/ ![][1] [1]: /media/images/f69695ec-e047-44f6-95ce-cd4edf1c
Comment: How to access GWAVA software of data
by
nonaddldy
▴ 10
https://www.sanger.ac.uk/tool/gwava/
Comment: Is it necessary to do genotype quality filteration after snp calling with GATK
by
IdaHao0921
• 0
The species I study is not a model species, VQSR can not be applied here. I already used gatk hard-filtering. I mean, after hard-filtering,…
Answer: Overlapping Ranges within Granges object
by
Alex Reynolds
35k
If you're not tied to Granges, you could use `bedmap --fraction-both 0.1` to require at least 10% overlap between reference and map regions…
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred
by
Vijith
▴ 30
By doing some online search, I tried installing one module `cpan Bio::DB::Fasta` and it is running like a never-ending installation process…
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred
by
Vijith
▴ 30
I have tried installing AGAT. But it failed the tests. …
Comment: BWA alignment
by
ATpoint
82k
That is not what the logs above tell, but good you solved it.
Answer: Inquiry about deseq2 transformation
by
ATpoint
82k
The transformations first correct for sequencing depth (and [composition][1]) and then apply the variance stabilization / regularization. N…
Traffic: 2608 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6