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1,000 results • Page
4 of 20
Sort: Rank
Rank
Views
Votes
Replies
7
votes
6
replies
463
views
Filtering sam or bam file with maximum matching region
crisper-edited
alignment
match
4 days ago by
analyst
▴ 30
1
vote
1
reply
255
views
Removing Illumina microarray probes with no expression HumanHT-12v4
microarray
HumanHT-12v4
Illumina
updated 6 days ago by
Gordon Smyth
★ 7.0k • written 6 days ago by
Bioinformatician
• 0
1
vote
0
replies
539
views
The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
Primers
TRINITY
6 days ago by
mathavanbioinfo
▴ 90
1
vote
1
reply
297
views
GTF file from Stringtie to R Studio for either Ballgown or DESeq2
Stringtie
Cufflinks
Ballgown
DESeq2
updated 6 days ago by
Ram
43k • written 6 days ago by
Nina
• 0
2
votes
5
replies
518
views
MEGA Analysis Issue on High-Performance Computer
phylogenetic-analysis
MEGA
updated 5 days ago by
Mensur Dlakic
★ 27k • written 6 days ago by
Giorgio
• 0
2
votes
1
reply
286
views
Running blastp with BLAST+ 2.15.0 against custom database; need to identify hits
shotgun
metagenomics
blastp
taxonomy
updated 6 days ago by
GenoMax
141k • written 6 days ago by
rebecca.calvo
• 0
0
votes
0
replies
212
views
Using samtools with GCS (google cloud storage) on a docker container seems to give "Protocol Not Supported" error
samtools
gcs
5 days ago by
abhishekghadge
• 0
2
votes
5
replies
683
views
what's the genomic location and name of gene responsible for orange and black patches in calico cats
genomes
updated 5 days ago by
Jesse
▴ 740 • written 6 days ago by
Ann
★ 2.4k
0
votes
0
replies
187
views
agilent microarray gpl data does not have gene symbol column
microarray
agilent
gpl
updated 6 days ago by
Ram
43k • written 6 days ago by
mja
• 0
0
votes
0
replies
188
views
scRNA Cluster frequency
CV
PCA
scRNA
Cluster-Frequency
6 days ago by
Nitin
• 0
1
vote
5
replies
559
views
Duplicate marking, read names, and the SRA
SRA
MarkDuplicates
updated 6 days ago by
GenoMax
141k • written 6 days ago by
Luka
• 0
0
votes
0
replies
188
views
absolute path for symbolic links in Snakefile
Snakemake
updated 6 days ago by
Ram
43k • written 6 days ago by
yifangt86
▴ 60
0
votes
0
replies
181
views
Chemical structure validation
structure
cap
validation
metabolite
6 days ago by
Rodolfo Adrián
• 0
3
votes
8
replies
1.2k
views
Cellranger count error: Input FASTQ file ended prematurely
scRNA-seq
Cellranger
STARsolo
10X
updated 6 days ago by
swbarnes2
14k • written 9 months ago by
bp22
▴ 80
0
votes
1
reply
261
views
Downloading the raw microarray data from GEO
.gpr
microarray
.CEL
updated 6 days ago by
GenoMax
141k • written 6 days ago by
bioyas
▴ 10
0
votes
0
replies
204
views
Copy number variation plot
Copy-number-variation
genomics
updated 6 days ago by
Ram
43k • written 6 days ago by
Emmi
• 0
1
vote
5
replies
697
views
RNA seq differential expression analysis
RNA-seq
normalization
updated 6 days ago by
BioinfGuru
★ 1.7k • written 8 days ago by
rrehimi
• 0
0
votes
0
replies
178
views
SNP calling with ANGSD and ngsLD. How many SNPs?
lcwgs
ngsTools
ANGSD
genomics
6 days ago by
DanielEB_fisk
▴ 20
0
votes
1
reply
282
views
Could you please assist in identifying this cluster?
single-cell
updated 6 days ago by
Ram
43k • written 6 days ago by
Kazo
• 0
4
votes
9
replies
2.6k
views
Tool:
CANEapp, a user-friendly application for automated next generation transcriptomic data analysis
RNA-Seq
written 8.2 years ago by
dvelmeshev
• 0
2
votes
7
replies
5.2k
views
6 follow
Memory usage of picard Samsort
Picard
SortSam
updated 6 days ago by
ATpoint
82k • written 7.2 years ago by
boymin2020
▴ 80
5
votes
13
replies
1.1k
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
R
Ubuntu
Linux
Bioconductor
Rstudio
updated 5 days ago by
ATpoint
82k • written 6 days ago by
BioinfGuru
★ 1.7k
1
vote
1
reply
412
views
Plink merge errors.
cygwin64
bed
PLINK
6 days ago by
Dinmukhamed
• 0
0
votes
0
replies
196
views
Conversion to tree format
PLINK
bed
Figtree
SplitsTree
updated 6 days ago by
Ram
43k • written 6 days ago by
Dinmukhamed
• 0
0
votes
0
replies
194
views
miRDeep2: How to get the read counts
mirdeep2
7 days ago by
Atul K.
• 0
3
votes
4
replies
653
views
Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (without Blat)
mapping
3 days ago by
rahu
• 0
0
votes
0
replies
201
views
Lncipedia GTF file error
Proteomics
updated 6 days ago by
Ram
43k • written 7 days ago by
atharvakarkare14
▴ 10
7
votes
3
replies
2.8k
views
Tutorial:
Prediction of Ribosomal RNA Genes Using RNAmmer Software
Annotation
rRNA
RNAmmer
Genome
updated 7 days ago by
colindaven
6.4k • written 15 months ago by
Dr.Animo
▴ 130
3
votes
3
replies
469
views
Free/open source 23andme-like analysis
SNPs
genomics
NGS
VCF
updated 6 days ago by
swbarnes2
14k • written 7 days ago by
joe
▴ 510
0
votes
2
replies
534
views
How to get the reference panel for UKBB
UKBB
GWAS
clump
7 days ago by
航太郎
• 0
11
votes
12
replies
943
views
Downloaded pdb's on rcsb.org
rcsb
pdb
updated 7 days ago by
Ram
43k • written 7 days ago by
iamsmor
• 0
0
votes
0
replies
213
views
create genewise sync file in popoolation
popoolation
updated 7 days ago by
GenoMax
141k • written 7 days ago by
N.Y.Wiyana-Hewage
• 0
0
votes
2
replies
372
views
error in coding potential calculator CPC2
cpc
CPC2
coding-potential
7 days ago by
Ashok
• 0
0
votes
2
replies
410
views
miRNAs quantification using mirdeep2 tool
differential-expression
mirdeep2
miRNA
7 days ago by
Ashok
• 0
0
votes
0
replies
212
views
Variant Generation Using Longshot
long-reads
variant-calling
ONT
minion
longshot
updated 7 days ago by
Ram
43k • written 7 days ago by
samuelkalandarov2002
▴ 10
1
vote
1
reply
368
views
Problem with Mirdeep2 and Randfold output
mirdeep2
Randfold
7 days ago by
otieno43
▴ 30
0
votes
2
replies
420
views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control
SNV
QC
SNP
6 days ago by
_quantum_girl_
▴ 10
0
votes
0
replies
202
views
traying to make a maf from an already annotated vcf
vcf
vcf2maf
maf
maftools
VEP
3 days ago by
Javier
• 0
1
vote
4
replies
681
views
What happened to Tombo Re-squiggle
Tombo
resquiggle
ONT
updated 7 days ago by
Ram
43k • written 3 months ago by
turcoa1
• 0
0
votes
0
replies
177
views
Pruning with plink finds a majority of SNPs in very high LD
LD
SNP
plink
pruning
7 days ago by
enferdeflame
• 0
1
vote
1
reply
414
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
updated 5 days ago by
Gordon Smyth
★ 7.0k • written 7 days ago by
Chris
▴ 260
0
votes
0
replies
189
views
News:
Online course: Meta-analysis in R
Meta-Analysis
Statistics
R
updated 7 days ago by
Ram
43k • written 7 days ago by
carlopecoraro2
★ 2.5k
3
votes
9
replies
791
views
How can I retrieve wheat lysine non-acetylated sequences from the UniProt database?
UniProt
updated 7 days ago by
Elisabeth Gasteiger
★ 2.4k • written 8 days ago by
Jacky
• 0
0
votes
1
reply
266
views
10x VDJ (TCR/BCR) BAM to fastq
TCR
VDJ
BCR
10x
updated 7 days ago by
GenoMax
141k • written 8 days ago by
predeus
★ 1.9k
0
votes
1
reply
266
views
DEseq2
RNA-seq
DESeq2
updated 7 days ago by
Ram
43k • written 8 days ago by
rrehimi
• 0
0
votes
0
replies
175
views
News:
Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo
Individual-Based-Models
Agent-Based-Models
updated 7 days ago by
Ram
43k • written 8 days ago by
carlopecoraro2
★ 2.5k
4
votes
2
replies
316
views
Assume "yes" as the answer to any prompts with bioconda
docker
container
bioconda
updated 8 days ago by
Juke34
8.5k • written 8 days ago by
njornet
▴ 20
1
vote
0
replies
175
views
Tutorial:
DNA Methylation: Sequencing Techniques
WGBS
RRBS
8 days ago by
Novogene
▴ 420
0
votes
1
reply
400
views
How to add rowLinks, rowTree in SummarizedExperiment manually.
phylogenetic-tree
microbiome
updated 7 days ago by
Ram
43k • written 19 months ago by
Muhammad
• 0
3
votes
3
replies
501
views
Korean human genome reference file
GWAS
reference
imputation
7 days ago by
SeoGyun
• 0
1,000 results • Page
4 of 20
Recent Votes
How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Simulation of label-free bottom-up proteomics expression dataset
How to normalize long-read RNA-seq data for comparison with short-reads
EdgeR analysis with CPM normalzed counts
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Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
benformatics
3.9k
This is way easier to do solely in R now 10 years later. library(GenomicFeatures) library(rtracklayer) ## import GTF…
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I'll see if I can explain things in super simple terms (albeit with some abuse of the actual technical details) to provide a conceptual und…
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If you have the accession numbers can you not use something like `eutils`?
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Thank you for replying Pierre. I first added a third column to the SNP bed file, so that I would get a range of 1 for each SNP awk 'B…
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> using bcftools Show us what you tried
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These are the first lines of the output: (Please is it normal to have NA in the P value column ?) CHR …
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