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1,000 results • Page
6 of 20
Sort: Rank
Rank
Views
Votes
Replies
4
votes
2
replies
290
views
How can I analyze normalized expression data?
DEseq2
RNA-seq
11 days ago by
mnx0723
• 0
3
votes
4
replies
4.0k
views
FarmCPU - how to explain the reported 'effect'?
gwas
updated 12 days ago by
chloek88
• 0 • written 5.6 years ago by
Philipp Bayer
8.5k
5
votes
7
replies
527
views
RNA seq analysis
DESeq
RNA-seq
5 days ago by
Jacek
▴ 20
11
votes
3
replies
368
views
TFs and Gene databases
Transcription-factor
Target
Regulatory-Networks
updated 12 days ago by
b.contreras.moreira
▴ 200 • written 13 days ago by
ijarne
• 0
0
votes
0
replies
152
views
Chance for trained without experience
bio
updated 12 days ago by
ATpoint
82k • written 12 days ago by
shehab
• 0
1
vote
2
replies
246
views
How do I change the title font size in ViolinPlot (Seurat)
Seurat
Violin-Plot
ggplot2
patchwork
12 days ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
134
views
Xenium multi sample data
batch
annotation
cell
Xenium
effect
12 days ago by
Omics data mining
▴ 260
0
votes
2
replies
206
views
Phasing a mixture of two individuals' DNA with long reads
long-reads
phasing
12 days ago by
njornet
▴ 20
0
votes
2
replies
236
views
Exploring Diet Effects in Single-Cell RNA Sequencing
batch_effect
scRNA
seurat
integration
updated 12 days ago by
Adam
▴ 30 • written 12 days ago by
Darya
• 0
0
votes
5
replies
312
views
Percentage coverage of reference genome by de novo genome
SAMtools
BWA
alignment
ddRAD
updated 12 days ago by
Joe
21k • written 12 days ago by
Lemonhope
• 0
0
votes
0
replies
188
views
Why does my Hi-C contact map show large regions making little to no contact?
BWA-MEM2
Hi-C
PretextMap
11 days ago by
Winter
• 0
0
votes
5
replies
362
views
A question about reference genome for creating the consensus sequence
fasta
fa
cram
genome
12 days ago by
me
• 0
2
votes
1
reply
159
views
java out of memory error through beagle for imutation
beagle
java.out.of.memory
imputation
12 days ago by
analyst
▴ 50
0
votes
0
replies
96
views
Blog:
Introduction to The Complete Sequence of a Human Genome
biotech
12 days ago by
usa.cd.genomics
• 0
0
votes
0
replies
107
views
Blog:
Overview of Nanopore Sequencing
biotech
12 days ago by
usa.cd.genomics
• 0
0
votes
0
replies
112
views
meffil.snp.concordance
meffil
methylation
snp_concordance
12 days ago by
kyj222637
• 0
0
votes
1
reply
173
views
PseudobulkExpression.Seurat error
Seurat
pseudo-bulk
updated 12 days ago by
Bastien Hervé
5.3k • written 12 days ago by
sooni
▴ 20
1
vote
5
replies
486
views
HCL database download
HCL
updated 12 days ago by
Ram
43k • written 16 days ago by
sooni
▴ 20
0
votes
1
reply
266
views
barcode of TCR-sequencing
barcode
updated 12 days ago by
mizraelson
▴ 60 • written 20 days ago by
yueli7
▴ 250
1
vote
3
replies
285
views
STAR aligner error
RNA-seq
STAR
slurm
updated 11 days ago by
Ram
43k • written 12 days ago by
M.
▴ 30
0
votes
0
replies
107
views
monocle 3-- Could not get node in small cluster
monocle3
12 days ago by
synat.keam
▴ 100
0
votes
2
replies
235
views
Correlating Bulk Differential Expression with quantitative
Differential-Expression
DESeq2
12 days ago by
Nicholas
• 0
1
vote
4
replies
420
views
Understanding STAR output (Aligned.out.sam file)
STAR
paired-end
read
13 days ago by
heelpPlease
• 0
0
votes
9
replies
667
views
Applying the metacell2 algorithm using python
python
single-cell
scanpy
metacell2
updated 5 days ago by
Wayne
★ 2.0k • written 14 days ago by
JACKY
▴ 140
0
votes
0
replies
126
views
News:
Online course. -Time series analysis and Forecasting in R
Time-Series
Forecasting
R
Stastics
13 days ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
503
views
HLA-HD tool for genomic imputation
genomics
imputation
bash
updated 12 days ago by
Javier
• 0 • written 3 months ago by
fra.r.silvestro
▴ 10
0
votes
1
reply
279
views
ERROR: Duplicate entry "..." in sam header; samtools view: failed to add PG line to the header
sort.
SAMtools.
BAM.
SAM.
updated 13 days ago by
GenoMax
142k • written 13 days ago by
Sony
▴ 10
5
votes
5
replies
351
views
Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent
EGSEA
12 days ago by
Chris
▴ 280
0
votes
2
replies
251
views
Differentail gene expression results
differential
expression
gene
rna-seq
Deseq2
updated 12 days ago by
swbarnes2
14k • written 13 days ago by
ahmad.sajad4541
• 0
1
vote
9
replies
447
views
UMI-Tools knee-method has great influence on the results of white list
single-cell
whitelist
UMI
RNA
UMI-Tools
updated 10 days ago by
i.sudbery
19k • written 13 days ago by
Assa Yeroslaviz
★ 1.8k
1
vote
1
reply
190
views
student
epitranscriptomics
updated 13 days ago by
ATpoint
82k • written 13 days ago by
useriwa
• 0
0
votes
3
replies
219
views
trying to count a pattern in my fastq file using bbduk
java
bbduk
bbmap
fastq
updated 13 days ago by
GenoMax
142k • written 13 days ago by
Assa Yeroslaviz
★ 1.8k
7
votes
1
reply
213
views
Tutorial:
removeBatchEffect explained using base R linear models
limma
effects
batch
removebatcheffects
updated 13 days ago by
dariober
14k • written 13 days ago by
nhaus
▴ 360
2
votes
2
replies
207
views
Is therer any suggestions on mapping rate of WGBS data?
mapping
read
alignment
WGBS
12 days ago by
Zeng Jingyu
▴ 60
1
vote
2
replies
297
views
News:
We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering
Spatial-transcriptomics
updated 13 days ago by
Weiwen
• 0 • written 14 days ago by
MICOS
▴ 10
0
votes
4
replies
328
views
Correlation Analysis
statistics
methylation
NGS
expression
9 days ago by
Researcher
▴ 30
1
vote
2
replies
213
views
Repeated testing/data mining in RNA Seq
repeated
RNA-Seq
mining
testing
data
13 days ago by
robert.flynn.21
• 0
1
vote
1
reply
251
views
Tool:
Converting Nebula Genomics Data to 23andMe Format
23andMe
Nebula
updated 13 days ago by
Michael
54k • written 13 days ago by
Guillermo
• 0
1
vote
5
replies
414
views
Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, Complexity, and Use Cases
fmindex
bwt
updated 12 days ago by
Michael
54k • written 13 days ago by
qwertyuiop26
• 0
0
votes
1
reply
199
views
What is the proper way to identify the cell types of scRNAseq cluster?
scRNAseq
updated 13 days ago by
ATpoint
82k • written 14 days ago by
MAPK2
▴ 40
0
votes
2
replies
348
views
Job:
Bioinformatics Analyst - Laboratory Medicine and Pathology
job
updated 13 days ago by
Xiaofen
• 0 • written 13 days ago by
toddknutson
▴ 60
0
votes
1
reply
163
views
Seeking Guidance on Identifying Mutations in DARs from ATAC Data in Cancer Genomes
Genomics
Cancer-Research
ATAC-seq
updated 6 days ago by
Ram
43k • written 13 days ago by
David
• 0
2
votes
4
replies
297
views
Where to get the following bed file?
WES
bed
reference
file
updated 13 days ago by
GenoMax
142k • written 13 days ago by
wyuan37
• 0
0
votes
0
replies
132
views
Get Paired TCRa/b from MIXCR
python
r
mixcr
tcr_seq
13 days ago by
Scott McKay
▴ 30
0
votes
0
replies
117
views
Cellphonedb results
cpdb
visulization
cellphonedb
13 days ago by
piotto
▴ 20
1
vote
0
replies
171
views
Job:
Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
Genomics
Alzheimer
multiomics
neuroimaging
13 days ago by
belloy
▴ 10
1
vote
3
replies
296
views
How to compute TPM normalized values for TCGA miRNA data?
TCGA
normalization
TPM
miRNA
updated 13 days ago by
swbarnes2
14k • written 14 days ago by
Ngrin
• 0
1
vote
6
replies
757
views
anRichment is missing
WGCNA
anRichment
updated 14 days ago by
GenoMax
142k • written 6 months ago by
michael.flower.14
▴ 180
1
vote
1
reply
227
views
Gene ontology and homologs
gene-ontology
updated 14 days ago by
geneontologyhelp
▴ 400 • written 15 days ago by
beshka194
• 0
1
vote
2
replies
273
views
error in R code: Error in fit_avlr(...), : wn incorrectly formatted
R
updated 14 days ago by
zx8754
11k • written 14 days ago by
snajafy
• 0
1,000 results • Page
6 of 20
Recent Votes
Answer: Filter Genome for Specific Sites
Answer: Filter Genome for Specific Sites
Answer: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
The Biostar Herald for Monday, May 20, 2024
Answer: Generating Group/Cluster Lists from fastq files
The Biostar Herald for Monday, May 20, 2024
ClusterProfiler : What is GeneRatio and BgRatio?
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Recent Replies
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
GenoMax
142k
For those samples it appears that raw data was not submitted. Just an assembly. $ esearch -db biosample -query SAMN08009548 | elink -…
Comment: How can I calculate the OS of each patient?
by
Pedro
• 0
**I have already tried this code. listSamples with HNSC cancer and smokers. I need at least one supporting material to find out the survi…
Comment: Filter Genome for Specific Sites
by
Anita
• 0
Great, thank you!
Comment: Filter Genome for Specific Sites
by
Anita
• 0
This is unhelpful and doesn't answer my question.
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
Harshita
• 0
It seems that the authors in this paper have used paired-end sequences only for their analysis, and for that, they would also have used the…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
Harshita
• 0
Thank you so much for helping me out in this! I have used most of the sequences that are found in this table. But, some samples like the…
Answer: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
GenoMax
142k
Looks like the samples are from this project: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA320483&o=acc_s%3Aa This table has the SR…
Comment: Filter Genome for Specific Sites
by
Pierre Lindenbaum
161k
> My sites are in an Excel file right now ![enter image description here][1] <!-- was an American educator and academic administrator…
Answer: Filter Genome for Specific Sites
by
GenoMax
142k
> I have a list of ~1,300 single bp sites Convert your file to plain text [**BED format**][1] (three fields required). Use `bedtools slo…
Comment: How to generate an Upset plot in R to plot the shared variants between cell free
by
sainavyav22
• 0
It worked, Thank you very much!
Comment: What marks a De-Novo Genome assembly as FAILED?
by
dthorbur
★ 2.0k
I'm unsure you'll be able to identify whole chromosomes that are not core from illumina reads alone. That might be easier to do with a micr…
Comment: Error in using BioSampleParser tool: subscript out of bounds
by
Mohamed Samir
▴ 20
Dear marco, We need to ask ourselves why it is not working for all bioprojects ? I have looked into this, and observed that as long as the…
Comment: Why most genes have high padj values
by
Ram
43k
You ***want*** ~3000 DE genes?<a href="" title="Text added because biostars parser needs it"></a>
Answer: Generating Group/Cluster Lists from fastq files
by
GenoMax
142k
> I was hoping to just do this in galaxy This is not a galaxy option but `clumpify.sh ` from BBMap suite can cluster sequences/dedupe th…
Comment: Practical Haplotype Graph v2 not finding correct paths
by
beantkapoor16
▴ 10
Hello, just wanted to check in if the code has been fixed yet? Thank you.
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