2 hours ago by
HarperReed
•
0
0
votes
0
replies
26
views
0
votes
1
reply
40
views
1
vote
0
replies
38
views
0
votes
0
replies
38
views
0
votes
0
replies
35
views
5 hours ago by
Nargis
•
0
0
votes
3
replies
150
views
0
votes
0
replies
34
views
0
votes
0
replies
57
views
0
votes
0
replies
66
views
0
votes
1
reply
103
views
updated 15 hours ago by
ATpoint
82k
•
written 15 hours ago by
AaronJaime
•
0
0
votes
0
replies
70
views
0
votes
0
replies
61
views
18 hours ago by
Emily
▴
10
1
vote
0
replies
78
views
0
votes
0
replies
63
views
19 hours ago by
synat.keam
▴
100
0
votes
1
reply
394
views
updated 20 hours ago by
ginellegrenier
•
0
•
written 4 months ago by
Clayton
•
0
0
votes
0
replies
80
views
0
votes
2
replies
158
views
0
votes
2
replies
175
views
0
votes
0
replies
103
views
0
votes
2
replies
207
views
0
votes
5
replies
284
views
updated 21 hours ago by
GenoMax
141k
•
written 1 day ago by
Bertalan_Takacs
▴
90
0
votes
0
replies
129
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
glaciya2018
•
0
0
votes
0
replies
247
views
0
votes
1
reply
139
views
updated 1 day ago by
Sofia
•
0
•
written 1 day ago by
mawigoj318
•
0
0
votes
0
replies
130
views
2 days ago by
salias
•
0
0
votes
4
replies
249
views
1 day ago by
sehriban.buyukkilic
▴
10
0
votes
0
replies
112
views
updated 1 day ago by
Ram
43k
•
written 2 days ago by
newuser2024
•
0
1
vote
2
replies
196
views
1 day ago by
ahmad.sajad4541
•
0
0
votes
0
replies
94
views
0
votes
0
replies
104
views
0
votes
1
reply
142
views
updated 2 days ago by
Mensur Dlakic
★
27k
•
written 2 days ago by
benguyarenbeyaz98
•
0
0
votes
2
replies
234
views
updated 1 day ago by
Ram
43k
•
written 2 days ago by
v.berriosfarias
▴
140
2
votes
9
replies
818
views
0
votes
11
replies
462
views
0
votes
1
reply
150
views
updated 2 days ago by
bk11
★
2.4k
•
written 2 days ago by
alphaflylizard
•
0
0
votes
0
replies
93
views
2 days ago by
ohtang7
▴
40
0
votes
1
reply
153
views
0
votes
5
replies
285
views
0
votes
0
replies
87
views
0
votes
0
replies
94
views
1
vote
3
replies
205
views
1
vote
3
replies
247
views
2 days ago by
Art1ess
•
0
0
votes
1
reply
129
views
updated 2 days ago by
bk11
★
2.4k
•
written 3 days ago by
Susmita Mandal
▴
110
1
vote
1
reply
164
views
0
votes
0
replies
86
views
0
votes
1
reply
143
views
updated 3 days ago by
Ram
43k
•
written 3 days ago by
Cameron.walker9900
•
0
0
votes
8
replies
306
views
0
votes
0
replies
107
views
updated 3 days ago by
Ram
43k
•
written 3 days ago by
maxime.policarpo
▴
200
0
votes
0
replies
92
views
0
votes
0
replies
94
views
Recent Votes
Recent Locations •
All
Europe, just now
France, 1 minute ago
Spain, 1 minute ago
Germany, 1 minute ago
Germany, 1 minute ago
United Kingdom, 2 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 4 minutes ago
Recent Awards •
All
Popular Question to
sil_bioinfo
▴
40
Popular Question to
sapuizait
▴
10
Popular Question to
zdiazmar
▴
30
Popular Question to
hkarakurt
▴
180
Student to
John Torcivia
▴
70
Recent Replies
Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
benformatics
3.9k
This is way easier to do solely in R now 10 years later.
library(GenomicFeatures)
library(rtracklayer)
## import GTF…
Answer: what is the purpose of indexing the reference genome (Kallisto)
by
dsull
★
5.8k
I'll see if I can explain things in super simple terms (albeit with some abuse of the actual technical details) to provide a conceptual und…
Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
Jalil Sharif
▴
80
The updated code in R using rtracklayer for reading a gtf file.
https://github.com/jalilsharif/gtf_utr_fix_r/blob/main/gencode_utr_fix_d…
Answer: Rare Disease Variant Pathway Analysis
by
The_PyPanda
▴
10
Thank you LauferVA,
Your advice has been useful and I now a lot to think about and read.
Also, I just wanted to clarify I do not ha…
Comment: CDS vs cDNA vs transcript for mapping RNA-Seq reads
by
Antonio R. Franco
★
5.1k
You cannot do it with Kallisto either. In fact, the indexation will fail in attempting to index a genome file
Comment: PCA plot
by
ATpoint
82k
What is your question? Add details and clarity. Ask a precise question and please avoid opening more questions on the same underlying issue…
Comment: genome assembly records not present in assembly_summary.txt
by
Joe
21k
If you have the accession numbers can you not use something like `eutils`?
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
> Next, I tried using bedtools window
but in your original post you said
> tried finding the intersection of these bed files using bedto…
Comment: How to trim transcripts using information from NCBI contamination screen report
by
Lada
▴
30
Thank you very much! I tried it out! This is a handy tool useful for many different applications, and in regards to my problem - although …
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
•
0
Thank you for replying Pierre.
I first added a third column to the SNP bed file, so that I would get a range of 1 for each SNP
awk 'B…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
> using bcftools
Show us what you tried
Answer: gvcf joint calling
by
Jeremy Leipzig
22k
> Hi, guys, there is a question about the genomic gVCF file. I wonder
> that since gVCF contains the non-var block records, why after merge…
Comment: Missing protein (VEGF-A) in String db
by
shalespringer
•
0
Thank you for replying here; this helped me figure out why MAPK10 was missing from my results. It was also marked as a pseudogene in the En…
Comment: How to convert plink files to Hapmap Format
by
Sofia
•
0
These are the first lines of the output: (Please is it normal to have NA in the P value column ?)
CHR …
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie
by
atowns21
•
0
So I used the barcodes that I created (combos of positions 1-10 and 11-20) and I obtained similar alignment stats as the paper I pulled the…
Traffic: 2592 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6