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News: supporting vg users on biostars
vg graph vgteam genome News variation
updated 6 weeks ago by 4.4k • written 3.4 years ago by ★ 2.3k
2
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4
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1.1k
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News: Online training - Snakemake: Reproducible and Scalable Bioinformatic Workflows
Snakemake Pipeline
14 months ago by carlopecoraro2 ★ 2.2k
4
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4
replies
2.6k
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News: Join The Dnanexus Developer Program
cloud api News
9.6 years ago by akislyuk ▴ 30
0
votes
4
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361
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News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 6 weeks ago by ★ 2.1k • written 9 weeks ago by ▴ 10
6
votes
4
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893
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News: Course online - Comparative Genomics
assembly next-gen genome alignment News
2.8 years ago by carlopecoraro2 ★ 2.2k
31
votes
4
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6.0k
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News: Rosalind: A Novel Bioinformatics Education Platform
bioinformatics education News
10.3 years ago by phcompeau ▴ 310
1
vote
4
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1.7k
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News: webserver of TCGA data www.tcgaportal.org
RNA-Seq gene rna-seq genome News
4.7 years ago by xushutan ▴ 40
2
votes
4
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863
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News: Course ONLINE - RNAseq data analysis with R and Bioconductor (15-19 June)
rna-seq R Bioconductor News
updated 2.7 years ago by ★ 1.3k • written 2.7 years ago by ★ 2.2k
0
votes
4
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1.7k
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News: What NGS courses would you like us to prepare for 2016? (one week left)
NGS Survey Workshop
updated 5 months ago by 37k • written 7.1 years ago by 9.8k
15
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4
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2.2k
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News: Call For Nominations: 2013 Benjamin Franklin Award
News
updated 9.9 years ago by 33k • written 10.0 years ago by 152k
5
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4
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1.6k
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News: 2nd International Conference on Pediatric Oncology and Pediatric Medicine
gene News
updated 5.9 years ago by 125k • written 5.9 years ago by • 0
9
votes
3
replies
3.0k
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News: New Human Genome Assembly (Grch38) Released
human genome assembly News
9.1 years ago by Pierre Lindenbaum 152k
3
votes
3
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2.0k
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News: Innocentive Challenge: Identify Organisms From A Stream Of Dna Sequences And Get $1,000,000
ngs News
updated 9.8 years ago by 96k • written 9.8 years ago by ▴ 830
7
votes
3
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3.5k
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News: Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
RNA-Seq R NGSdata genome News
4.1 years ago by carlopecoraro2 ★ 2.2k
4
votes
3
replies
2.0k
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News: India Recently Started Personal Genome Profiling, Commercially.
News
updated 9.7 years ago by 5.2k • written 9.7 years ago by ▴ 960
15
votes
3
replies
6.3k
views
News: Top Bioinformatics Contributions Of 2013
bioinformatics News
updated 9.0 years ago by 5.7k • written 9.2 years ago by ★ 1.1k
3
votes
3
replies
3.5k
views
News: A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing News
10.4 years ago by Istvan Albert 96k
0
votes
3
replies
2.5k
views
News: Physalia-courses: 16S rRNA gene Metabarcoding Workshop
SNP gene rna-seq sequencing sequence News
4.3 years ago by carlopecoraro2 ★ 2.2k
0
votes
3
replies
400
views
News: NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST blastx BLAST NCBI ClusteredNR
23 days ago by PeterC_NCBI ▴ 180
2
votes
3
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1.2k
views
News: Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation
rna-seq rna extraction dna extraction Tool News
updated 4.4 years ago by 47k • written 4.4 years ago by ▴ 20
1
vote
3
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873
views
News: 4th Berlin Summer School in NGS Data Analysis - October 5-9, 2020
NGS RNA-Seq DNA-Seq News
2.7 years ago by David Langenberger 9.8k
4
votes
3
replies
2.9k
views
News: CAFE v4.0 available
CAFE phylogenetics News
updated 3.3 years ago by • 0 • written 5.9 years ago by ▴ 140
20
votes
3
replies
2.3k
views
News: Nature Comment: Core services: Reward bioinformaticians
career-path
updated 7 months ago by 37k • written 7.8 years ago by ★ 2.2k
2
votes
3
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1.7k
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News: PDX Models: Tumor-stroma interaction
ChIP-Seq R pdx transcriptome News
5.5 years ago by Pine Biotech ▴ 70
5
votes
3
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1.3k
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News: Bioinfo-Core Conference Call, October 17, 2017 (11 am EDT USA, local times around world)
bioinfo-core News
5.3 years ago by GenoMax 125k
22
votes
3
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2.6k
views
News: Biostar: 10,000 Question Milestone
News
updated 9.7 years ago by 9.5k • written 9.7 years ago by 96k
5
votes
3
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1.8k
views
News: Nhgri Meeting About Human Variation Analysis Live Streaming [Now Done]
exome next-gen variation News
10.4 years ago by Mary 11k
12
votes
3
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2.1k
views
News: Google Summer of Code and Open Bioinformatics Foundation is looking for students
open source job Forum News
updated 4.0 years ago by ▴ 10 • written 6.9 years ago by 7.7k
0
votes
3
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940
views
News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 6 weeks ago by 37k • written 7 months ago by ▴ 10
4
votes
3
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2.5k
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News: -max_target_seqs 1 in NCBI standalone BLAST does not do what you think it does
software error blast News
updated 4.3 years ago by 102k • written 4.3 years ago by 11k
2
votes
3
replies
2.7k
views
News: Summer Course On Analyzing Next-Generation Sequencing Data, June 10-20, Kellog Biological Station, Michigan State University
education News
10.0 years ago by Istvan Albert 96k
4
votes
3
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1.7k
views
News: Proteomics and Genomics Submit your Research Journals
Research Genomics Journals Proteomics
updated 8 weeks ago by 37k • written 7.6 years ago by • 0
2
votes
3
replies
271
views
News: NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser NCBI Alignments Genome
6 weeks ago by PeterC_NCBI ▴ 180
0
votes
3
replies
367
views
News: Nvidia Clara Parabricks is FREE for R&D
nvidia workflow gpu
updated 6 weeks ago by 2.6k • written 6 weeks ago by 152k
6
votes
3
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2.1k
views
News: Become a Professional Biinformatician in NGS, Microarray in very fair price. Register for ArrayGen training program as soon as possible to get good a…
RNA-Seq ChIP-Seq next-gen News
updated 6.0 years ago by 18k • written 6.0 years ago by • 0
7
votes
3
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4.1k
views
News: Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api cytoscape News
9.2 years ago by B. Arman Aksoy ★ 1.2k
18
votes
3
replies
2.1k
views
News: LAST CALL: Next-Generation Sequencing Data Analysis: A Practical Introduction (Frankfurt, Germany) - 2 seats left
DNA-Seq NGS Workshop Variant-Calling
updated 6 months ago by 37k • written 5.9 years ago by 9.8k
8
votes
3
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1.3k
views
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 16 months ago by 125k • written 17 months ago by ★ 2.4k
2
votes
3
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1.4k
views
News: GCCBOSC 2018: A Bioinformatics Community Conference Call for Abstracts
BOSC GCC Galaxy Community Conference News
4.9 years ago by Chris Fields ★ 2.2k
7
votes
3
replies
1.4k
views
News: New NCBI Datasets home and documentation pages provide easier access
ncbi gene SARS-CoV-2 genome
updated 21 months ago by 96k • written 21 months ago by ▴ 50
4
votes
3
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1.5k
views
News: Boston Genomics Hackathon (facilitated by NCBI)
RNA-Seq hackathon NCBI DNA-seq News
6.9 years ago by DCGenomics ▴ 320
0
votes
3
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2.0k
views
News: Bioinformatics National Certification Examination (BINC)
BINC EXAM News
updated 6.7 years ago by 23k • written 6.7 years ago by • 0
0
votes
3
replies
788
views
News: EMBO | EMBL Symposium: Seeing is Believing - Imaging the Molecular Processes of Life
image analysis News
4.2 years ago by EMBL Events • 0
9
votes
3
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4.3k
views
News: Bioinformatics Contest 2020. Call for problems
contest News
2.9 years ago by alserg ▴ 780
0
votes
3
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1.4k
views
News: M.Phil Program in Bioinformatics
News M.Phil
updated 16 months ago by 37k • written 7.2 years ago by • 0
5
votes
3
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1.2k
views
News: Top GitHub repos for biomedicine
GitHub software open source News
4.1 years ago by field.cady ▴ 50
8
votes
3
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1.5k
views
News: Impact of outdated gene annotations on pathway enrichment analysis
david go ontology pathway enrichment News
6.3 years ago by pld 5.0k
3
votes
3
replies
1.8k
views
News: Workshop: Berlin. Data manipulation and visualization with Python. 13-17 March (Registration deadline is today!!)
SNP next-gen RNA-Seq genome News
6.0 years ago by carlopecoraro2 ★ 2.2k
14
votes
3
replies
3.2k
views
News: Updated: Conference/Symposium/Seminar/Workshop alert 2018-2019
bioinformatics symposium seminar conference News
updated 4.3 years ago by ▴ 260 • written 4.7 years ago by 5.7k
0
votes
3
replies
2.1k
views
News: Eukaryotic Metabarcoding workshop
blast alignment next-gen News
6.2 years ago by carlopecoraro2 ★ 2.2k
1,000 results • Page 3 of 20
Recent Votes
C: Reorder heatmap rows in a dataset with missing values
A: Difference between GTF file with CHR and without CHR. ENSEMBL
Answer: Base recalibration in normal vs. tumor somatic variant calling in WXS data?
A: from .BAM to .BAI using samtools
Comment: bgzip error 4
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
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Recent Replies
Answer: trainGlimmerHMM Error while training a genome by congliu37 • 0
Hello, I got the same error using ~20,000 genes for training and it was solved by reducing training gene set. I assume GlimmerHMM was no…
Comment: How to Calulate Allele Frequency from a VCF File? by Jeremy Leipzig 21k
That's correct. You don't have biallelic alleles in mitochondria, so you can use either the Allele depth (AD) or depth of coverage (DP) for…
Comment: How to calculate tumor mutation burden (TMB)? by Fabio Marroni ★ 2.9k
I just published a [post][1] on my blog, in which I include a simple R function for computing TMB. Try to see if that helps. I followed the…
Comment: Gene Set Enrichment Analysis, pathway, metabolism by Rob ▴ 160
Thank you FrankStarling, ATpoint, jv, these were so helpful.
Comment: translate CDS to prot formatted with nt nubers by Pierre Lindenbaum 152k
> with nucleotide numbers and DNA/prot aligned line by line what does it mean ? Create a Minimal, Reproducible Example to enable others t…
Comment: How to translate CDS to an amino acid sequence by vvasta • 0
I tried several of the online DNA translation tools but have not found one that would output DNA/prot alignment with nucleotide number w…
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb? by Pierre Lindenbaum 152k
but you already knew it. https://www.biostars.org/p/9551097/#9551098
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb? by Pierre Lindenbaum 152k
your question is not related to bioinformatics. Ask stackoverflow.com.
Comment: Statistical test for checking cis regulation? by Fabio Marroni ★ 2.9k
Hi lumos. It is not very clear to me what kind of information are you using for the test and how are you measuring cis-regulation. Are you …
Comment: Error 134 while aligning using hisat2 by Fabio Marroni ★ 2.9k
Other instances of the same error were indeed related to disk [space][1]. Can you post the output of the command: `df -h /bams/`? Another p…
Comment: **Error: unable to open file or unable to determine types for file** by Pierre Lindenbaum 152k
``` Please ensure that your file is TAB delimited (e.g., cat -t FILE). - Also ensure that your file has integer chromosome coordinates in t…
Comment: bgzip error 4 by Pierre Lindenbaum 152k
I/O error. Where are you writing , which filesytem ? do you have enough space ? what is the output of gzip < chr1.vcf.gz > chr1.vcf.gz…
Comment: Error: unable to open file or unable to determine types for file bed file by Neel ▴ 10
**Error: unable to open file or unable to determine types for file** Hi i am trying to run this commands **bedtools intersect -a Ec_k1…
Answer: Anti-miRNA oligonuclotide identification by Asan Emirsale • 0
You should find complementary sequences to make the miRNA silent. Should it be the Biopython or another tool. The solution might be as simp…
Comment: counting reads in a fastq file using a refrence fasta file by vaslanzadeh ▴ 10
Thanks, this works but it is extremely slow, is there any other alternatives?
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