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729
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108k
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100 follow
News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 9 days ago by 1.6k • written 6.3 years ago by 97k
32
votes
6
replies
12k
views
7 follow
News: Ncbi Releases Entrez Direct, The Entrez Utilities On The Unix Command Line
ncbi genbank pubmed command-line entrez
updated 21 days ago by 38k • written 9.1 years ago by 153k
15
votes
2
replies
10k
views
News: Breaking News - Illumina MiniSeq
next-gen-sequencing
updated 7 months ago by 38k • written 7.2 years ago by ★ 1.3k
9
votes
5
replies
9.6k
views
8 follow
News: Online course: Learn Bioinformatics in 100 hours
biostars online-course
updated 5 weeks ago by 38k • written 5.6 years ago by 97k
122
votes
42
replies
8.7k
views
21 follow
News: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
meta biostars
updated 5 weeks ago by 38k • written 10.3 years ago by 97k
17
votes
6
replies
8.4k
views
News: Final registration deadline: September 15th - Bioinformatics Hands-On NGS Data Analysis Workshops 2014
methylation RNA-seq
updated 17 days ago by 38k • written 9.0 years ago by 9.9k
9
votes
5
replies
8.2k
views
News: A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg api
updated 29 days ago by 38k • written 10.3 years ago by ▴ 50
15
votes
18
replies
7.3k
views
6 follow
News: New Free Community Tutorial Website For Bioinformatics Learning
ChIP-seq genome snp RNA-seq
updated 24 days ago by 38k • written 9.7 years ago by ▴ 610
21
votes
7
replies
7.1k
views
News: Survey: Rna-Seq Analysis For Differential Gene/Transcript Expression [Updated With Results]
transcript RNA-seq gene
updated 28 days ago by 38k • written 10.3 years ago by ▴ 250
14
votes
6
replies
6.5k
views
News: FINAL CALL: NGS Workshop - A Beginner's Guide to NGS Data Analysis (2 last seats)
NGS RNA-Seq workshop
updated 3 months ago by 38k • written 7.7 years ago by 9.9k
12
votes
8
replies
6.4k
views
News: rRNA Depletion / Poly-A Selection Responsible for RNA-seq Bias
rRNA-depletion RNA-seq-bias
updated 17 days ago by 38k • written 8.7 years ago by ▴ 640
3
votes
0
replies
6.4k
views
News: A Bioinformatics Jobs AMA (Ask Me Anything) on Reddit
reddit r market
updated 7 months ago by 38k • written 7.3 years ago by ▴ 960
15
votes
3
replies
6.4k
views
News: Top Bioinformatics Contributions Of 2013
bioinformatics
updated 22 days ago by 38k • written 9.3 years ago by ★ 1.1k
19
votes
11
replies
6.3k
views
News: Solid Software Tools: Denovo Assembly/Xsq Tools Pipeline Mirrored At Biostar
SOLID
updated 4 weeks ago by 38k • written 10.6 years ago by 97k
31
votes
4
replies
6.1k
views
News: Rosalind: A Novel Bioinformatics Education Platform
education
updated 29 days ago by 38k • written 10.5 years ago by ▴ 310
81
votes
39
replies
6.0k
views
11 follow
News: State Of Biostar - Future Directions (January 2013)
biostars
updated 5 weeks ago by 38k • written 10.2 years ago by 97k
22
votes
9
replies
6.0k
views
News: Epigenetics Workshop - DNA Methylation Data Analysis
bisulfite-sequencing workshop epigenetics
updated 11 weeks ago by 38k • written 7.8 years ago by 9.9k
25
votes
7
replies
5.8k
views
News: Pubmed Commons : A System That Enables Researchers To Share Their Opinions About Scientific Publications
ncbi pubmed
updated 23 days ago by 38k • written 9.4 years ago by 153k
45
votes
19
replies
5.6k
views
8 follow
News: Gamestorming For Bioinformatics
gamestorming
updated 29 days ago by 38k • written 10.5 years ago by 27k
57
votes
24
replies
5.5k
views
14 follow
News: Join us in building a bioinformatics resource: The Biostar Handbook
biostar-handbook
updated 6 months ago by 38k • written 7.5 years ago by 97k
21
votes
16
replies
5.1k
views
6 follow
News: Pandora's Toolbox - a collection of bioinformatics programs
Assembly alignment RNA-Seq
updated 11 months ago by 38k • written 8.2 years ago by ★ 1.1k
6
votes
0
replies
5.0k
views
News: Game Changer? Illumina Nextseq 500
illumina
updated 21 days ago by 38k • written 9.2 years ago by ★ 1.3k
11
votes
25
replies
5.0k
views
15 follow
News: Questions for the NCBI Next Generation Sequencing Online Workshop Can be Posted with the NCBI_NOW Tag
NCBI_NOW News
updated 6 months ago by 38k • written 7.5 years ago by ▴ 320
6
votes
7
replies
4.8k
views
News: Illumina Nextseq 500 And Hiseq X Ten: Newer Tech Lowering Cost Per Mbp
Illumina
updated 21 days ago by 38k • written 9.2 years ago by ▴ 640
2
votes
0
replies
4.7k
views
News: LAST CALL: Two days left to register for our workshop 'RNA-seq Bioinformatics: A Practical Introduction'
RNA-Seq workshop
updated 17 days ago by 38k • written 8.7 years ago by 9.9k
0
votes
0
replies
4.6k
views
News: Bioinformatics Training Courses - Metagenomics and NGS data analysis - Sydney and Canberra, Australia
metagenomics training next-gen-sequencing
updated 17 days ago by 38k • written 8.8 years ago by 49k
7
votes
3
replies
4.2k
views
News: Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api cytoscape
updated 22 days ago by 38k • written 9.3 years ago by ★ 1.2k
3
votes
0
replies
4.2k
views
News: Free Online Harvardx Course, Data Analysis For Genomics, Starts April 7
methylation bioconductor ChIP-seq RNA-seq R
updated 17 days ago by 38k • written 9.0 years ago by ★ 2.2k
5
votes
2
replies
4.2k
views
News: GeneSCF (Gene Enrichment Tool): Advice to users
kegg GeneSCF GO annotation
updated 5 weeks ago by 38k • written 6.2 years ago by 7.4k
24
votes
7
replies
4.0k
views
News: #Bioinformatics Crowdcoding
crowd-coding
updated 24 days ago by 38k • written 9.7 years ago by 153k
1
vote
0
replies
4.0k
views
News: Hands-On Training in RNA-seq Bioinformatics: A Practical Introduction - Mapping, Visualization, Basic Analyses
next-gen RNA-Seq workshop
updated 17 days ago by 38k • written 8.8 years ago by 9.9k
23
votes
7
replies
4.0k
views
News: Research accounts on GitHub
github git
updated 17 days ago by 38k • written 8.9 years ago by 153k
1
vote
0
replies
3.7k
views
News: Workshop: Bioinformatics for Beginners, University of Maryland, College Park, USA
next-gen RNA-Seq workshop assembly
updated 6 weeks ago by 38k • written 7.9 years ago by ▴ 20
7
votes
8
replies
3.7k
views
News: Next-Gen Sequencing Tutorials On Cubelp (Cranfield Bioinformatics Electronic Learning Platform)
genome chip-seq snp assembly
updated 5 months ago by 38k • written 9.6 years ago by ▴ 610
8
votes
6
replies
3.7k
views
News: Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 28 days ago by 38k • written 10.2 years ago by 9.9k
6
votes
9
replies
3.6k
views
News: 1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
1000genomes
updated 17 days ago by 38k • written 8.8 years ago by 153k
3
votes
3
replies
3.6k
views
News: A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing
updated 4 weeks ago by 38k • written 10.6 years ago by 97k
27
votes
9
replies
3.6k
views
News: OSX 10.11 released 30th Sep will be "rootless"
mac osx
updated 6 months ago by 38k • written 7.5 years ago by 13k
3
votes
2
replies
3.5k
views
News: Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
RNA-seq
updated 28 days ago by 38k • written 10.2 years ago by 20k
0
votes
0
replies
3.5k
views
News: Journal Of Bioinformatics Research Studies- Call For Papers
publication biology
updated 17 days ago by 38k • written 9.0 years ago by • 0
8
votes
10
replies
3.4k
views
News: New versions of Minia and DSK (2.0.x)
minia dsk assembly gatb
updated 11 months ago by 38k • written 8.1 years ago by ★ 1.5k
11
votes
2
replies
3.4k
views
News: Coursera: Computational Molecular Evolution
course
updated 27 days ago by 38k • written 9.8 years ago by 153k
5
votes
2
replies
3.4k
views
News: Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser RNA-seq ChIP-seq
updated 23 days ago by 38k • written 9.4 years ago by ★ 2.3k
6
votes
1
reply
3.4k
views
News: Symposium And Rna-Seq Data Analysis Workshop Charlotte May 13-14
RNA RNA-seq training
updated 17 days ago by 38k • written 9.0 years ago by ★ 2.3k
9
votes
4
replies
3.4k
views
News: Conference Announcement - Camda 2013
conference classification
updated 28 days ago by 38k • written 10.2 years ago by ▴ 240
5
votes
1
reply
3.3k
views
News: Broad Gatk Haplotypecaller Speed Improved 2-4 X By Cooperation With Intel, And Incremental Multi-Sample Calling Made Possible!
gatk variant-calling
updated 17 days ago by 38k • written 9.0 years ago by ★ 5.2k
12
votes
7
replies
3.3k
views
News: Welcome Ensembl REST with more endpoints!
ensembl rest-api
updated 15 days ago by 38k • written 8.4 years ago by ★ 5.2k
2
votes
0
replies
3.3k
views
News: Bioinformatics Open Days 2Nd Edition - 14 And 15 Of March, 2013 At The University Of Minho, Campus Gualtar, Braga, Portugal.
conference
updated 28 days ago by 38k • written 10.2 years ago by ▴ 20
51
votes
17
replies
3.2k
views
News: Biostars 3.0 is now under testing. It has groups, charms and other interesting features.
meta biostars
updated 5 weeks ago by 38k • written 8.0 years ago by 97k
17
votes
9
replies
3.2k
views
News: My Ncbi Curriculum Vitae Web Application: Sciencv
ncbi
updated 23 days ago by 38k • written 9.5 years ago by 153k
458 results • Page 1 of 10
Recent Votes
A: What Makes One Probability Distribution Better For Rna-Seq Than Another?
Answer: How to demultiplex single end - dual index run - NextSeq 500
How to calculate Exon-Intron junction perbase coverage?
Comment: how to get to a VCF from bam files
Answer: Snakemake error to build synteny from BUSCO .tsv
How to find promoter sequence of a gene?
Answer: How to demultiplex single end - dual index run - NextSeq 500
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Scholar to GenoMax 127k
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Recent Replies
Comment: Python formatting when visualizing Primer3-py dimers by bhumm ▴ 30
Hi Wayne, Thanks for the response. I have updated the code to be more representative of the toy example I have provided - apologies for an…
Comment: chloroplast genome gaps by Pierre Lindenbaum 153k
> , but the alignment results show different size gaps. what does it mean ?
Comment: lncTar by Ram 38k
I see that you added an answer to a 2 year old post. Don't do that - what you added was "I have this problem too" comment, not an answer. I…
Comment: LncTar error by Ram 38k
Do not add answers unless you're answering the top level question. Given that you've opened a new question, I'm deleting this post.
Comment: Samtools fixmate: whta's wrong with the terminal? by Ram 38k
Lol I started writing first, then discovered each issue as I was writing. All I saw was the `-0` but then oh my goodness, so many problems!
Comment: SKAT in R by Pierre Lindenbaum 153k
cross-posted: https://bioinformatics.stackexchange.com/questions/20772
Comment: Samtools fixmate: whta's wrong with the terminal? by Pierre Lindenbaum 153k
oh , Ram was too fast ! :-D
Answer: Samtools fixmate: whta's wrong with the terminal? by Pierre Lindenbaum 153k
1) your [standard][1] output is redirected to the terminal instead of a [file][2]. 2) there is no such option `-0` (zero) . your want …
Answer: multiallelic variants by raphael.B ▴ 290
you can use bcftools norm on your vcf to split multiallelic records prior to merging
Answer: Samtools fixmate: whta's wrong with the terminal? by Ram 38k
The output format parameter is `-O`, not `-0`. Also, there's a `-` before the `path/` which makes samtools thing `ath/file_fixmated.bam` is…
Comment: lncTar by Ram 38k
> Zea maize Is that a typo or a pun on *Zea mays* being maize?
Comment: How to demultiplex single end - dual index run - NextSeq 500 by Apex92 ▴ 260
Thank you for your input it was helpful.
Comment: normalized score for SpatialFeaturePlot by jv ★ 1.0k
not sure that this is the issue, but are you sure that `SpatialFeaturePlot` is pulling from the SCT assay in each case? Another way to ask …
Comment: Python formatting when visualizing Primer3-py dimers by Wayne ★ 1.6k
You should include all your code to produce your toy example so that others can pick up with what you have worked. And then more likely you…
Comment: How to demultiplex single end - dual index run - NextSeq 500 by GenoMax 127k
You must know that this flowcelll was run as say 50x8x8x50. Length of the index cycles here 8 matches your indexes in the samplesheet. You …
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