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News: FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq next-gen NGS
updated 10 months ago by 39k • written 7.3 years ago by 9.9k
10
votes
4
replies
678
views
News: Good morning
good morning
updated 8 months ago by 98k • written 8 months ago by 85k
10
votes
4
replies
736
views
News: RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS transcriptomics workshop
updated 10 weeks ago by ▴ 30 • written 3 months ago by 9.9k
2
votes
4
replies
1.2k
views
News: Online training - Snakemake: Reproducible and Scalable Bioinformatic Workflows
Snakemake Pipeline
18 months ago by carlopecoraro2 ★ 2.3k
1
vote
4
replies
1.5k
views
News: Bioconductor Development Visualization
bioconductor
updated 10 months ago by 39k • written 8.1 years ago by 26k
5
votes
4
replies
1.6k
views
News: 2nd International Conference on Pediatric Oncology and Pediatric Medicine
gene
updated 6 weeks ago by 39k • written 6.2 years ago by • 0
6
votes
4
replies
1.4k
views
News: Genomic variation course at the EBI - Updated
Ensembl 1000Genomes snps variation
updated 7 weeks ago by 39k • written 7.2 years ago by 23k
0
votes
4
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1.8k
views
News: What NGS courses would you like us to prepare for 2016? (one week left)
NGS Survey Workshop
updated 9 months ago by 39k • written 7.5 years ago by 9.9k
15
votes
4
replies
4.1k
views
News: Workshop: Genomic Data Visualization and Interpretation (Berlin, Germany)
dataviz GenVisR next-gen R
updated 6 weeks ago by 39k • written 6.2 years ago by ★ 2.3k
10
votes
4
replies
1.5k
views
News: 3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS RNA-Seq DNA-Seq
updated 2 days ago by 39k • written 4.4 years ago by 9.9k
6
votes
4
replies
4.0k
views
News: awesome-single-cell: a list of open-source single-cell analysis software and workshop materials
single-cell RNA-Seq
updated 7 weeks ago by 39k • written 6.9 years ago by 26k
15
votes
4
replies
2.3k
views
News: Call For Nominations: 2013 Benjamin Franklin Award
benjamin-franklin-award award
updated 3 months ago by 39k • written 10.3 years ago by 154k
1
vote
3
replies
928
views
News: 4th Berlin Summer School in NGS Data Analysis - October 5-9, 2020
NGS RNA-Seq DNA-Seq News
3.0 years ago by David Langenberger 9.9k
3
votes
3
replies
3.6k
views
News: A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing
updated 3 months ago by 39k • written 10.8 years ago by 98k
4
votes
3
replies
3.0k
views
News: CAFE v4.0 available
phylogenetics CAFE
updated 16 days ago by 39k • written 6.2 years ago by ▴ 150
0
votes
3
replies
2.1k
views
News: Eukaryotic Metabarcoding workshop
next-gen blast alignment
updated 6 weeks ago by 39k • written 6.5 years ago by ★ 2.3k
15
votes
3
replies
6.5k
views
News: Top Bioinformatics Contributions Of 2013
bioinformatics
updated 12 weeks ago by 39k • written 9.5 years ago by ★ 1.1k
2
votes
3
replies
409
views
News: NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser NCBI Alignments Genome
5 months ago by PeterC_NCBI ▴ 260
4
votes
3
replies
2.7k
views
News: -max_target_seqs 1 in NCBI standalone BLAST does not do what you think it does
blast
updated 3 days ago by 39k • written 4.6 years ago by 11k
5
votes
3
replies
1.3k
views
News: Bioinfo-Core Conference Call, October 17, 2017 (11 am EDT USA, local times around world)
bioinfo-core
updated 9 weeks ago by 39k • written 5.8 years ago by 129k
9
votes
3
replies
3.0k
views
News: New Human Genome Assembly (Grch38) Released
human-genome assembly
updated 12 weeks ago by 39k • written 9.4 years ago by 154k
12
votes
3
replies
2.2k
views
News: Google Summer of Code and Open Bioinformatics Foundation is looking for students
GSoC open-source
updated 7 weeks ago by 39k • written 7.2 years ago by 7.7k
18
votes
3
replies
2.2k
views
News: LAST CALL: Next-Generation Sequencing Data Analysis: A Practical Introduction (Frankfurt, Germany) - 2 seats left
DNA-Seq NGS Workshop Variant-Calling
updated 10 months ago by 39k • written 6.2 years ago by 9.9k
5
votes
3
replies
493
views
News: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core pipeline Nextflow
updated 9 weeks ago by ▴ 230 • written 3 months ago by 3.7k
4
votes
3
replies
1.6k
views
News: Boston Genomics Hackathon (facilitated by NCBI)
NCBI RNA-Seq DNA-seq hackathon
updated 7 weeks ago by 39k • written 7.2 years ago by ▴ 320
6
votes
3
replies
2.2k
views
News: Become a Professional Biinformatician in NGS, Microarray in very fair price. Register for ArrayGen training program as soon as possible to get good a…
ChIP-Seq next-gen RNA-Seq
updated 6 weeks ago by 39k • written 6.3 years ago by • 0
8
votes
3
replies
1.6k
views
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 20 months ago by 129k • written 21 months ago by ★ 2.4k
0
votes
3
replies
835
views
News: EMBO | EMBL Symposium: Seeing is Believing - Imaging the Molecular Processes of Life
image-analysis
updated 2 days ago by 39k • written 4.6 years ago by • 0
0
votes
3
replies
2.1k
views
News: Bioinformatics National Certification Examination (BINC)
BINC
updated 7 weeks ago by 39k • written 7.1 years ago by • 0
2
votes
3
replies
1.2k
views
News: Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation
rna-extraction dna-extraction rna-seq
updated 3 days ago by 39k • written 4.7 years ago by ▴ 20
2
votes
3
replies
1.8k
views
News: PDX Models: Tumor-stroma interaction
transcriptome pdx R ChIP-Seq
updated 12 days ago by 39k • written 5.8 years ago by ▴ 70
0
votes
3
replies
1.0k
views
News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 5 months ago by 39k • written 11 months ago by ▴ 10
1
vote
3
replies
564
views
News: NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST blastx BLAST NCBI ClusteredNR
4 months ago by PeterC_NCBI ▴ 260
4
votes
3
replies
2.1k
views
News: India Recently Started Personal Genome Profiling, Commercially.
genome-profiling
updated 3 months ago by 39k • written 10.0 years ago by ▴ 970
0
votes
3
replies
416
views
News: NCBI update complete. Aspera users please update your client.
NCBI Submissions GenBank
3 months ago by PeterC_NCBI ▴ 260
7
votes
3
replies
3.6k
views
News: Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
R RNA-Seq genome NGSdata
updated 15 days ago by 39k • written 5.9 years ago by ★ 2.3k
4
votes
3
replies
1.7k
views
News: How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications
ChIP-Seq RNA-Seq
updated 6 weeks ago by 39k • written 6.4 years ago by ▴ 350
2
votes
3
replies
1.4k
views
News: GCCBOSC 2018: A Bioinformatics Community Conference Call for Abstracts
Galaxy-Community-Conference BOSC GCC
updated 8 days ago by 39k • written 5.3 years ago by ★ 2.2k
20
votes
3
replies
2.4k
views
News: Nature Comment: Core services: Reward bioinformaticians
career-path
updated 11 months ago by 39k • written 8.1 years ago by ★ 2.2k
9
votes
3
replies
4.5k
views
News: Bioinformatics Contest 2020. Call for problems
contest News
3.3 years ago by alserg ▴ 830
3
votes
3
replies
778
views
News: Want to automate your NGS analyses and create reproducible/scalable pipelines? Join our hands-on Nextflow workshop!
nextflow NGS pipeline
13 months ago by David Langenberger 9.9k
5
votes
3
replies
1.3k
views
News: Top GitHub repos for biomedicine
open-source software GitHub
updated 2 days ago by 39k • written 4.4 years ago by ▴ 50
2
votes
3
replies
2.8k
views
News: Summer Course On Analyzing Next-Generation Sequencing Data, June 10-20, Kellog Biological Station, Michigan State University
education
updated 3 months ago by 39k • written 10.3 years ago by 98k
3
votes
3
replies
1.9k
views
News: Workshop: Berlin. Data manipulation and visualization with Python. 13-17 March (Registration deadline is today!!)
next-gen RNA-Seq genome SNP
updated 6 weeks ago by 39k • written 6.3 years ago by ★ 2.3k
0
votes
3
replies
656
views
News: Nvidia Clara Parabricks is FREE for R&D
nvidia workflow gpu
updated 5 months ago by 2.7k • written 5 months ago by 154k
0
votes
3
replies
2.6k
views
News: Physalia-courses: 16S rRNA gene Metabarcoding Workshop
RNA-seq sequencing SNP gene sequence
updated 6 weeks ago by 39k • written 6.6 years ago by ★ 2.3k
14
votes
3
replies
3.4k
views
News: Updated: Conference/Symposium/Seminar/Workshop alert 2018-2019
seminar symposium conference
updated 5 days ago by 39k • written 5.0 years ago by 5.7k
8
votes
3
replies
1.6k
views
News: Impact of outdated gene annotations on pathway enrichment analysis
pathway-enrichment gene-ontology david go
updated 7 weeks ago by 39k • written 6.7 years ago by 5.1k
3
votes
3
replies
508
views
News: NCBI's IgBLAST version 1.21.0 is now available
IgBLAST BLAST T-Cell NCBI receptors
10 days ago by PeterC_NCBI ▴ 260
4
votes
3
replies
1.8k
views
News: Proteomics and Genomics Submit your Research Journals
Research Genomics Journals Proteomics
updated 5 months ago by 39k • written 7.9 years ago by • 0
1,000 results • Page 3 of 20
Recent Votes
Comment: DEgs RNAseq
Answer: ScRNA data
Answer: extract all fasta sequence from db v5
Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, but the Max expression are near 20,000
Comment: Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, b
Answer: Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, b
A: extract dendrogram cluster from pheatmap
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Comment: Do bioinformaticians often break molecular biologists' hearts by being the first by jli.ww • 0
Based on my personal experience as a computational biologist, I was not a co-first author even if I prioritized the candidates from the pub…
Comment: DEgs RNAseq by Juan • 0
Dear Delaney Sullivan, thanks, finlly I did my analisys
Answer: ScRNA data by Dr William Klubinski ▴ 20
It seems like your single cell RNAseq data does not already contain the Cell Barcodes or Unique Molecular Identifiers in the standard way -…
Comment: Demultiplexing bam file by GenoMax 129k
> Part of the header of the bam file So perhaps there are more samples. https://www.biostars.org/u/21477/: `grep "SM*" header_of_bam`. Is…
Answer: extract all fasta sequence from db v5 by GenoMax 129k
If you need the fasta sequence download from NCBI here (146 GB zip compressed file) : https://ftp.ncbi.nih.gov/blast/db/FASTA/nr.gz
Comment: ScRNA data by GenoMax 129k
Is this from a SRA dataset? If so it is possible that you can get the correct information in `DataAccess` tab. Provide the accession number…
Comment: extract all fasta sequence from db v5 by Pierre Lindenbaum 154k
is version 4 compatible with blast v5 ? try to use version 4....
Comment: Pre-processing for Agilent microarray data? by solarchan7 • 0
thank you!
Comment: Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, b by alwayshope ▴ 20
Thanks a lot! Very helpful detailed guidance! Appreciate it a lot!
Answer: Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, b by Dr William Klubinski ▴ 20
The values you are getting, with a third quartile of appx 10 and a max of appx 20,000, seem quite standard for RNA-Seq analysis. The RNA-se…
Comment: Demultiplexing bam file by Pierre Lindenbaum 154k
you don't talk about the size in your question
Comment: Demultiplexing bam file by hasani.iut6 ▴ 60
so why the size of bam file is 40 gig?
Comment: Demultiplexing bam file by Pierre Lindenbaum 154k
> I want to separate every sample I don't understand. In your header there is only one sample : "`13.02.1402_POOL2"`
Comment: Error while running Megahit by Mensur Dlakic ★ 23k
We can't even begin to guess what the problem was without an error message.
Comment: DEgs RNAseq by dsull ★ 4.2k
Is this single-cell RNAseq or non-single-cell RNAseq? For single-cell, you typically don't do standard "differential gene expression analy…
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