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1,000 results • Page
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4
votes
4
replies
1.7k
views
News:
VCFclin working group
vcfclin
updated 14 months ago by
Ram
43k • written 10.0 years ago by
keilbeck
▴ 30
4
votes
0
replies
1.9k
views
News:
Bioinformatics education: biology-inspired bioinformatics with project-based learning
education
RNA-seq
updated 11 months ago by
Ram
43k • written 6.1 years ago by
elia.brodsky
▴ 340
4
votes
2
replies
1.3k
views
News:
Hands-On Workshop: How to use bisulfite-treated sequencing to study DNA methylation (BS-Seq, Bisulfite-Seq, WGBS)
Workshop
methylation
bisulfite
updated 11 months ago by
Ram
43k • written 4.6 years ago by
Lars
★ 1.0k
4
votes
3
replies
1.1k
views
News:
You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases
NCBI
BLAST
8 months ago by
PeterC_NCBI
▴ 410
4
votes
0
replies
4.0k
views
News:
RepurposeDB - A New Reference Database of Drug Repositioning
precision-medicine
drug-repositioning
updated 12 months ago by
Ram
43k • written 7.2 years ago by
Khader Shameer
18k
4
votes
1
reply
1.9k
views
News:
scRNA-seq data analysis Workshop in Berlin
RNA-Seq
next-gen
updated 11 months ago by
Ram
43k • written 5.5 years ago by
carlopecoraro2
★ 2.5k
4
votes
0
replies
1.1k
views
News:
2nd edition of the WORKSHOP on Genomic Data Visualization and Interpretation
R
BioConductor
DataViz
updated 11 months ago by
Ram
43k • written 5.7 years ago by
carlopecoraro2
★ 2.5k
4
votes
0
replies
658
views
News:
A Practical Introduction to Single-Cell RNA-Seq Data Analysis (November 8-10, 2023 in Berlin, Germany)
NGS
RNA-Seq
single-cell
workshop
11 months ago by
David Langenberger
11k
3
votes
0
replies
4.4k
views
News:
Free Online Harvardx Course, Data Analysis For Genomics, Starts April 7
methylation
bioconductor
ChIP-seq
RNA-seq
R
updated 14 months ago by
Ram
43k • written 10.1 years ago by
rtliu
★ 2.2k
3
votes
0
replies
1.6k
views
News:
Restructuring the 1000 Genomes FTP site
sequencing
SNP
alignment
updated 20 months ago by
Ram
43k • written 8.7 years ago by
Laura
★ 1.8k
3
votes
0
replies
1.7k
views
News:
Human Genome Project: Twenty-five years of big biology
Human-Genome-Project
updated 20 months ago by
Ram
43k • written 8.6 years ago by
venu
7.1k
3
votes
1
reply
2.3k
views
News:
NCBI : New API Keys for the E-utilities
pubmed
eutils
ncbi
api
updated 12 months ago by
Ram
43k • written 6.5 years ago by
Pierre Lindenbaum
161k
3
votes
0
replies
1.9k
views
News:
Deep learning in GATK4
GATK4
deep-learning
GATK
updated 12 months ago by
Ram
43k • written 6.4 years ago by
vdauwera
★ 1.2k
3
votes
4
replies
2.4k
views
News:
Training in Metagenomics Data Analysis @NIH, USA, Nov 14 - 17, 2017
metagenomics
microbiome
training
updated 13 months ago by
Ram
43k • written 7.6 years ago by
AABI
▴ 140
3
votes
1
reply
4.8k
views
News:
Genome Aggregation Database
exac
genome
database
variants
updated 13 months ago by
Ram
43k • written 7.6 years ago by
Pierre Lindenbaum
161k
3
votes
0
replies
1.0k
views
News:
Nextflow Slack Channel
nextflow
slack
2.2 years ago by
ATpoint
82k
3
votes
0
replies
677
views
News:
Unix / scripting / research computing resource
scripting
parallel
hpc
unix
programming
2.9 years ago by
bacon4000
▴ 80
3
votes
0
replies
2.5k
views
News:
Samtools/htslib/bcftools 1.1 released
htslib
samtools
updated 14 months ago by
Ram
43k • written 9.6 years ago by
Devon Ryan
104k
3
votes
2
replies
1.3k
views
News:
Genome Informatics meeting software list
meetings
genomics
informatics
software
updated 12 months ago by
Ram
43k • written 6.5 years ago by
Sean Davis
26k
3
votes
0
replies
3.0k
views
News:
Introduction to Python for Biologists and Advanced Python for Biologists courses
Python
updated 16 months ago by
Ram
43k • written 9.0 years ago by
Bert Overduin
★ 3.7k
3
votes
1
reply
6.8k
views
News:
LinkedOmics - a web portal for TCGA/CPTAC data
TCGA
cptac
cancer
updated 12 months ago by
Ram
43k • written 6.4 years ago by
GenoMax
142k
3
votes
0
replies
3.3k
views
News:
Tumorportal - A Tool For Exploring A Pan-Cancer Dataset
tcga
cancer-genomics
updated 14 months ago by
Ram
43k • written 10.3 years ago by
Malachi Griffith
20k
3
votes
1
reply
960
views
News:
Results are now available for the precisionFDA NCI-CPTAC Multi-omics Enabled Sample Mislabeling Correction Challenge!
precisionFDA
NCI
challenge
algorithm
multi-omics
updated 11 months ago by
Ram
43k • written 5.3 years ago by
sarah01122009
▴ 60
3
votes
5
replies
2.3k
views
News:
Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
kegg
gene-enrichment
cancer
gene-ontology
updated 13 months ago by
Ram
43k • written 7.7 years ago by
EagleEye
7.5k
3
votes
0
replies
2.7k
views
News:
Bioinformatics Specialization on Coursera
MOOCs
Education
updated 19 months ago by
Ram
43k • written 8.7 years ago by
phcompeau
▴ 50
3
votes
3
replies
2.3k
views
News:
Innocentive Challenge: Identify Organisms From A Stream Of Dna Sequences And Get $1,000,000
ngs
updated 14 months ago by
Ram
43k • written 11.1 years ago by
bioinfo
▴ 830
3
votes
0
replies
2.7k
views
News:
SeqAhead - COST - Bioinformatics for Non-Coding RNAs: State-of-the-art Training Workshop: 30/6-3/7/2014, Athens, Greece
RNA-Seq
workshop
lncRNA
microRNA
updated 14 months ago by
Ram
43k • written 10.0 years ago by
IV
★ 1.3k
3
votes
2
replies
764
views
News:
NCBI BLAST+ 2.14.1 Now Available
NCBI
BLAST
8 months ago by
PeterC_NCBI
▴ 410
3
votes
1
reply
1.5k
views
News:
Frederick Sanger ( 1918 - 2013 )
sanger-institute
updated 14 months ago by
Ram
43k • written 10.5 years ago by
Pierre Lindenbaum
161k
3
votes
0
replies
623
views
News:
Tutorial on SemiBin (metagenonomics binning tool). June 14 - online
metagenomics
binning
updated 23 months ago by
GenoMax
142k • written 23 months ago by
Luispedro
▴ 60
3
votes
0
replies
152
views
News:
Interested in Spatial Omics?
Bioconductor
Spatial-Omics
Spatial-Transcriptomics
updated 22 days ago by
Ram
43k • written 22 days ago by
carlopecoraro2
★ 2.5k
3
votes
0
replies
713
views
News:
Testing and feedback of upcoming salmon release
salmon
RNA-Seq
updated 11 months ago by
Ram
43k • written 4.7 years ago by
Rob
6.5k
3
votes
1
reply
2.7k
views
News:
Ngs Session At Biocomp Bg 2012 Conference!
next-gen-sequencing
updated 15 months ago by
Ram
43k • written 12.0 years ago by
ve9
▴ 50
3
votes
0
replies
1.5k
views
News:
Bioconductor Conference, July 31 - Aug 1, 2014, Boston
bioconductor
updated 14 months ago by
Ram
43k • written 9.9 years ago by
Sean Davis
26k
3
votes
0
replies
1.3k
views
News:
Course on Programming for Evolutionary Biology
Evolution
R
genome
Python
updated 11 months ago by
Ram
43k • written 5.5 years ago by
Chris Fields
★ 2.2k
3
votes
2
replies
1.2k
views
News:
Course "Data Crunching: from hell to heaven", Udine, Italy, 25-27 July, 2018
NGS
next-generation-sequencing
updated 11 months ago by
Ram
43k • written 6.0 years ago by
Fabio Marroni
★ 3.0k
3
votes
0
replies
6.8k
views
News:
A Bioinformatics Jobs AMA (Ask Me Anything) on Reddit
reddit
r
market
updated 21 months ago by
Ram
43k • written 8.4 years ago by
Leandro Lima
▴ 970
3
votes
1
reply
845
views
News:
PrecisionFDA has won a FedHealth IT award!!
platform
cloud-based
precision-medicine
award
updated 11 months ago by
Ram
43k • written 4.9 years ago by
stephens_sarah
▴ 150
3
votes
0
replies
2.3k
views
News:
2013 Gmod Community Survey
gff3
galaxy
biomart
updated 14 months ago by
Ram
43k • written 11.3 years ago by
girlwithglasses
▴ 280
3
votes
5
replies
2.3k
views
News:
(18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology
CAFA
protein
9 months ago by
Alexander
▴ 220
3
votes
5
replies
1.3k
views
News:
Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl
GTF
updated 8 months ago by
alejandrogzi
▴ 120 • written 18 months ago by
dlaehnemann
▴ 30
3
votes
0
replies
795
views
News:
::FINAL CALL:: NGS Data Analysis for Beginners - 11-13 December 2019 in Munich, Germany (2 seats left)
NGS
Workshop
updated 11 months ago by
Ram
43k • written 4.5 years ago by
David Langenberger
11k
3
votes
2
replies
2.6k
views
News:
Samtools/htslib v1.2 released
htslib
samtools
bcftools
updated 14 months ago by
Ram
43k • written 9.3 years ago by
Devon Ryan
104k
3
votes
1
reply
1.2k
views
News:
UniProt: Change of FT and CC section in UniProtKB text format
uniprot
protein
updated 11 months ago by
Ram
43k • written 4.7 years ago by
Elisabeth Gasteiger
★ 2.4k
3
votes
1
reply
628
views
News:
Free web seminars related to small non-coding RNA bioinformatics
smallRNA
microRNA
updated 17 months ago by
Ram
43k • written 2.0 years ago by
laurent.guyon
▴ 60
3
votes
4
replies
2.1k
views
News:
OmicCircos was updated
R
OmicCircos
updated 24 months ago by
Ram
43k • written 9.2 years ago by
yhu
▴ 50
3
votes
0
replies
1.4k
views
News:
Large scale cancer RNA-Seq study (more than 5k samples were analyzed in this study)
RNA-Seq
cancer
updated 23 months ago by
Ram
43k • written 9.1 years ago by
David Langenberger
11k
3
votes
1
reply
1.2k
views
News:
Results are now available for the precisionFDA CDRH Biothreat Challenge!
NGS
metagenomics
FDA
biothreat
updated 11 months ago by
Ram
43k • written 5.3 years ago by
sarah01122009
▴ 60
3
votes
0
replies
1.8k
views
News:
Dnanexus Is Giving Away 1 Free Agbt 4-Day Badge
next-gen
conference
updated 14 months ago by
Ram
43k • written 11.3 years ago by
aanderson
▴ 30
3
votes
1
reply
971
views
News:
Course - Genomics with R and Bioconductor - Berlin
R
Bioconductor
updated 11 months ago by
Ram
43k • written 4.9 years ago by
carlopecoraro2
★ 2.5k
1,000 results • Page
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Answer: DESeq2 error
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Answer: In one PCA plot, can I calculate the percentage of different factors that contri
Answer: Calculate allelic frequency from VEP output vcf file
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Comment: Sequencing Depth (Read Depth) Calculations
by
LucisTheFather
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Understood! Gonna try those two!
Comment: Sequencing Depth (Read Depth) Calculations
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LucisTheFather
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Thank u very much!
Comment: How to extract cells of different species after mapping with combined genome?
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You have used the tag `snRNAseq`. I am not familiar with singleron tech but if you have sequence data you may be able to use `xenome` or `b…
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It may be best to go back to the original data and then do `bbmerge.sh` on it to get original insert size estimates (before any operations …
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Hi Brian, Thank you and apologies for the extra future revision works. Out of curiosity we disabled neural networks 'nn=f' and the file o…
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Hi Genomax, This is the thread: https://www.biostars.org/p/9582467/ Cheers, Chris
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that's helpful, thanks :)
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by
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20k
Ah, this is a little embarrassing; those are the vectors for the neural network. I overloaded a field that was being used for the insert s…
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by
kl
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Thanks - I corrected it. It doesn't seem to annotate. I converted to binary after which is what is shown below. It is not the output I want…
Comment: Filtering VCF files based on VAF giving incorrect results
by
Arton
▴ 10
These are valid questions. Does your code address the concerns you've raised? From what I understand, FilterVcf is primarily designed for h…
Answer: Calculate allelic frequency from VEP output vcf file
by
ramiro.barrantes
• 0
Found the answer here!! https://github.com/Illumina/strelka/blob/master/docs/userGuide/README.md#somatic Although this leads to a str…
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by
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43k
That's not a valid reason to delete the post. If that information was sensitive, posting it here was a mistake in the first place. I don't …
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marco.barr
▴ 120
Hi, regardless of how you generated the data whether with DESeq2 or other pipeline, your differential expression matrix can be used as inpu…
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161k
> Do you think my commands were correct? I'm not familiar enough with this bcftools syntax. but what if there is no AD, what if both…
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Ash
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I know this was asked several years ago, but finding this post helped me solve my own problem and in the process I solved this one too. …
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