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1,000 results • Page
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4
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0
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News:
Python for Scientists - FREE Ebook from O'Reilly
python
Data-Analysis
updated 13 months ago by
Ram
43k • written 8.6 years ago by
rtliu
★ 2.2k
4
votes
1
reply
2.3k
views
News:
ENCODE Users' Meeting
encode
ucsc
conference
functional-genomics
ensembl
updated 21 months ago by
Ram
43k • written 8.9 years ago by
Emily
23k
4
votes
2
replies
3.1k
views
News:
NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI
DNA-Seq
NGS
RNA-Seq
updated 13 months ago by
Ram
43k • written 8.6 years ago by
rtliu
★ 2.2k
4
votes
0
replies
1.9k
views
News:
Viral Bioinformatics and Genomics course August 2017, Glasgow
next-gen
updated 12 months ago by
Ram
43k • written 7.2 years ago by
richard.orton
▴ 40
4
votes
1
reply
2.2k
views
News:
Mark2Cure launches tool to help crowd-source curation of the biomedical literature
crowd-sourcing
updated 16 months ago by
Ram
43k • written 9.3 years ago by
Obi Griffith
20k
4
votes
0
replies
2.4k
views
News:
2nd UK Bioinformatics Student Symposium on 7 Oct '15 at TGAC, Norwich
symposium
updated 19 months ago by
Ram
43k • written 8.7 years ago by
sayonidas03
▴ 100
4
votes
0
replies
1.2k
views
News:
Workshop for genomic data visualization and interpretation
R
RNA-Seq
ggplot2
genomics
updated 11 months ago by
Ram
43k • written 5.4 years ago by
Malachi Griffith
19k
4
votes
0
replies
724
views
News:
Call for Bioinformatics Papers - Genes Special Issue
gene
updated 11 months ago by
Ram
43k • written 4.3 years ago by
Federico Giorgi
▴ 730
3
votes
4
replies
2.4k
views
News:
Training in Metagenomics Data Analysis @NIH, USA, Nov 14 - 17, 2017
metagenomics
microbiome
training
updated 13 months ago by
Ram
43k • written 7.6 years ago by
AABI
▴ 140
3
votes
0
replies
1.7k
views
News:
Human Genome Project: Twenty-five years of big biology
Human-Genome-Project
updated 20 months ago by
Ram
43k • written 8.6 years ago by
venu
7.1k
3
votes
2
replies
2.6k
views
News:
Samtools/htslib v1.2 released
htslib
samtools
bcftools
updated 13 months ago by
Ram
43k • written 9.3 years ago by
Devon Ryan
104k
3
votes
0
replies
137
views
News:
Interested in Spatial Omics?
Bioconductor
Spatial-Omics
Spatial-Transcriptomics
updated 12 days ago by
Ram
43k • written 12 days ago by
carlopecoraro2
★ 2.5k
3
votes
1
reply
956
views
News:
Results are now available for the precisionFDA NCI-CPTAC Multi-omics Enabled Sample Mislabeling Correction Challenge!
precisionFDA
NCI
challenge
algorithm
multi-omics
updated 11 months ago by
Ram
43k • written 5.2 years ago by
sarah01122009
▴ 60
3
votes
0
replies
1.6k
views
News:
Ensembl in the Google Summer of Code 2016
ensembl
GSOC
Google
updated 13 months ago by
Ram
43k • written 8.2 years ago by
Emily
23k
3
votes
0
replies
1.5k
views
News:
Restructuring the 1000 Genomes FTP site
sequencing
SNP
alignment
updated 19 months ago by
Ram
43k • written 8.7 years ago by
Laura
★ 1.8k
3
votes
2
replies
693
views
News:
Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF
SARS-CoV-2
NCBI
Codeathon
11 months ago by
PeterC_NCBI
▴ 410
3
votes
0
replies
1.8k
views
News:
Dnanexus Is Giving Away 1 Free Agbt 4-Day Badge
next-gen
conference
updated 14 months ago by
Ram
43k • written 11.3 years ago by
aanderson
▴ 30
3
votes
0
replies
1.2k
views
News:
Changes to the default NCBI BLAST nucleotide database (nt). Learn more and provide feedback!
NCBI
Databases
BLAST
17 months ago by
PeterC_NCBI
▴ 410
3
votes
1
reply
4.8k
views
News:
Genome Aggregation Database
exac
genome
database
variants
updated 13 months ago by
Ram
43k • written 7.5 years ago by
Pierre Lindenbaum
161k
3
votes
0
replies
1.3k
views
News:
Course on Programming for Evolutionary Biology
Evolution
R
genome
Python
updated 11 months ago by
Ram
43k • written 5.4 years ago by
Chris Fields
★ 2.2k
3
votes
3
replies
3.9k
views
News:
A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing
updated 14 months ago by
Ram
43k • written 11.7 years ago by
Istvan Albert
100k
3
votes
0
replies
1.9k
views
News:
Deep learning in GATK4
GATK4
deep-learning
GATK
updated 11 months ago by
Ram
43k • written 6.4 years ago by
vdauwera
★ 1.2k
3
votes
5
replies
1.3k
views
News:
Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl
GTF
updated 7 months ago by
alejandrogzi
▴ 120 • written 17 months ago by
dlaehnemann
▴ 30
3
votes
3
replies
2.3k
views
News:
Innocentive Challenge: Identify Organisms From A Stream Of Dna Sequences And Get $1,000,000
ngs
updated 14 months ago by
Ram
43k • written 11.0 years ago by
bioinfo
▴ 830
3
votes
0
replies
3.3k
views
News:
Tumorportal - A Tool For Exploring A Pan-Cancer Dataset
tcga
cancer-genomics
updated 14 months ago by
Ram
43k • written 10.2 years ago by
Malachi Griffith
19k
3
votes
4
replies
2.1k
views
News:
OmicCircos was updated
R
OmicCircos
updated 23 months ago by
Ram
43k • written 9.2 years ago by
yhu
▴ 50
3
votes
0
replies
4.4k
views
News:
Free Online Harvardx Course, Data Analysis For Genomics, Starts April 7
methylation
bioconductor
ChIP-seq
RNA-seq
R
updated 14 months ago by
Ram
43k • written 10.1 years ago by
rtliu
★ 2.2k
3
votes
0
replies
2.3k
views
News:
2013 Gmod Community Survey
gff3
galaxy
biomart
updated 14 months ago by
Ram
43k • written 11.3 years ago by
girlwithglasses
▴ 280
3
votes
2
replies
610
views
News:
Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling
endocrinology
ML
systems-biology
machine-learning
5 weeks ago by
Johannes W. Dietrich
• 0
3
votes
1
reply
1.5k
views
News:
Bioconductor 2017 Conference, Boston, July 26-28
R
conference
Bioconductor
updated 12 months ago by
Ram
43k • written 7.1 years ago by
Sean Davis
26k
3
votes
0
replies
212
views
News:
Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy
Generative-AI
scRNA
Machine-Learning
updated 9 days ago by
Ram
43k • written 9 days ago by
Claire Watson
▴ 60
3
votes
3
replies
1.2k
views
News:
NCBI's IgBLAST version 1.21.0 is now available
IgBLAST
BLAST
T-Cell
NCBI
receptors
11 months ago by
PeterC_NCBI
▴ 410
3
votes
0
replies
712
views
News:
Testing and feedback of upcoming salmon release
salmon
RNA-Seq
updated 11 months ago by
Ram
43k • written 4.6 years ago by
Rob
6.5k
3
votes
1
reply
1.4k
views
News:
GATK returns to a fully open-source license
gatk
updated 11 months ago by
Ram
43k • written 7.0 years ago by
Istvan Albert
100k
3
votes
1
reply
1.2k
views
News:
UniProt: Change of FT and CC section in UniProtKB text format
uniprot
protein
updated 11 months ago by
Ram
43k • written 4.6 years ago by
Elisabeth Gasteiger
★ 2.4k
3
votes
0
replies
812
views
News:
Phylogenomics course in Berlin
snp
R
next-gen
updated 11 months ago by
Ram
43k • written 4.5 years ago by
carlopecoraro2
★ 2.5k
3
votes
0
replies
2.1k
views
News:
Big Data in Healthcare Symposium, Luxembourg, 28/29 October 2015
big-data
conference
medicine
health
updated 19 months ago by
Ram
43k • written 8.7 years ago by
Rainer
▴ 130
3
votes
6
replies
2.7k
views
News:
Brief Getting Started with Broad Firecloud tutorial posted
RNA-Seq
updated 13 months ago by
Ram
43k • written 7.9 years ago by
Sean Davis
26k
3
votes
0
replies
1.3k
views
News:
Nextflow Training Course
Pipeline
Workflow
NEXTFLOW
updated 11 months ago by
Ram
43k • written 4.6 years ago by
carlopecoraro2
★ 2.5k
3
votes
0
replies
2.7k
views
News:
SeqAhead - COST - Bioinformatics for Non-Coding RNAs: State-of-the-art Training Workshop: 30/6-3/7/2014, Athens, Greece
RNA-Seq
workshop
lncRNA
microRNA
updated 14 months ago by
Ram
43k • written 10.0 years ago by
IV
★ 1.3k
3
votes
0
replies
306
views
News:
NCBI BLAST+ 2.2.15 now available for download
NCBI
Taxonomy
BLAST
5 months ago by
PeterC_NCBI
▴ 410
3
votes
2
replies
1.3k
views
News:
Genome Informatics meeting software list
meetings
genomics
informatics
software
updated 11 months ago by
Ram
43k • written 6.5 years ago by
Sean Davis
26k
3
votes
1
reply
1.5k
views
News:
Frederick Sanger ( 1918 - 2013 )
sanger-institute
updated 14 months ago by
Ram
43k • written 10.5 years ago by
Pierre Lindenbaum
161k
3
votes
1
reply
6.8k
views
News:
LinkedOmics - a web portal for TCGA/CPTAC data
TCGA
cptac
cancer
updated 11 months ago by
Ram
43k • written 6.4 years ago by
GenoMax
142k
3
votes
0
replies
3.1k
views
News:
Statistics and R for the Life Sciences from Harvard University (Start: 19 Jan 2015)
edX
statistics
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
rtliu
★ 2.2k
3
votes
2
replies
752
views
News:
NCBI BLAST+ 2.14.1 Now Available
NCBI
BLAST
8 months ago by
PeterC_NCBI
▴ 410
3
votes
0
replies
793
views
News:
::FINAL CALL:: NGS Data Analysis for Beginners - 11-13 December 2019 in Munich, Germany (2 seats left)
NGS
Workshop
updated 11 months ago by
Ram
43k • written 4.5 years ago by
David Langenberger
11k
3
votes
0
replies
1.9k
views
News:
Free Training in Bioinformatic analysis available with Pine Biotech T-BioInfo
RNA-Seq
biotech
next-gen-sequencing
updated 11 months ago by
Ram
43k • written 6.9 years ago by
Pine Biotech
▴ 70
3
votes
1
reply
2.5k
views
News:
Variathon V0.1 - 2013 - Comparing Existing Or New Pipelines For Variant Calling In Terms Of Accuracy And Efficiency
ngs
conference
updated 14 months ago by
Ram
43k • written 11.2 years ago by
Pierre Lindenbaum
161k
3
votes
2
replies
3.8k
views
News:
Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
RNA-seq
updated 14 months ago by
Ram
43k • written 11.3 years ago by
Obi Griffith
20k
1,000 results • Page
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A: Fold change - a final explanation
Answer: sc/snRNASeq using cell ranger parameters
mitochondria in single nuclear RNAseq
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Comment: agilent human all exon sureselct v7 bed file
Answer: install package
Comment: Overlap File for RACON Genome Polisher
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Comment: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
by
mropri
▴ 150
Hi, I just wanted to update that IEGscore and PCNAscore were linearly dependent (or linear combinations of each other). I tested this using…
Comment: TaxID mapping file
by
Lada
▴ 30
if I understood correctly, I might need fle `prot.accession2taxid.gz` file? According to the [documentation][1] in column 2 is Accession.ve…
Answer: install package
by
Pine
▴ 10
To follow on Mathew's reply, one way might be to try and see if you can download and install the package tarball locally: 1. Get the packag…
Comment: agilent human all exon sureselct v7 bed file
by
MiladAD
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God bless you man.
Answer: install package
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Hi, This is what happens when I run some code to diagnose the issue. First, I wanted to see what version of R was required for the package…
Comment: TaxID mapping file
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thank you, I'll look at these files/documents. .
Answer: LD-prune variants while maintaining a list of SNPs
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I was given a solution by a colleague -- it seems a little hacky, but worked really well! > one way to get this to work is to use --clu…
Answer: Association study using SNP data
by
drajangirija
• 0
Hi Matthew, Thank you very much for your inputs. I am working with Neogen genotyping data, which includes GC values less than 0.15.
Comment: Downloading full alignments from Pfam
by
bef1
• 0
I tried contacting Pfam, they replied that indeed there is an issue on their side with the full alignments, which should be repaired in the…
Comment: Seeking Bioinformatics/Drug Design Opportunities - PhD in Pharmacology with Expe
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Mensur Dlakic
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Don't know about others, but I would never contact someone about potential employment based only on their interests and with zero knowledge…
Comment: The GDC Legacy Archive is retiring soon.
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Zhenyu Zhang
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If you are talking about methylation idat files, they were all migrated from legacy to the data portal. If you are talking about other pl…
Comment: How to access TCGA samples that were treated with a specific drug?
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These TCGA samples were taken 10 ~ 20 years ago, and there is no way they have been treated by the modern immunotherapy. Are you sure tha…
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Gordon Smyth
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> When is it recommended to use the design <- cbind(Intercept=1,Group=c(-1,-1,-1,1,1,1)) It is not recommended. No such code appears anywh…
Comment: GRCh38.gmap file
by
lorena9132
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Hi Mathew, The .txt files provided in the link differ from the .gmap files, but after several attempts, I succeeded in generating the .gma…
Answer: GRCh38.gmap file
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Hi, I have spent some time searching for a GRCH38 map file for you. I have found a certain publication that uses a hg38 genetic map file…
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