Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this year
all time
today
this week
this month
this year
900 results • Page
4 of 18
Sort: Views
Rank
Views
Votes
Replies
0
votes
0
replies
1.7k
views
News:
Bionformatics courses and Workshops in Berlin (Germany)
genome
sequence
R
SNP
rna-seq
updated 11 months ago by
Ram
43k • written 6.9 years ago by
carlopecoraro2
★ 2.5k
2
votes
3
replies
1.7k
views
News:
GCCBOSC 2018: A Bioinformatics Community Conference Call for Abstracts
Galaxy-Community-Conference
BOSC
GCC
updated 11 months ago by
Ram
43k • written 6.2 years ago by
Chris Fields
★ 2.2k
5
votes
2
replies
1.7k
views
News:
#scRNABIO & organoids meeting
single-cell-sequencing
microfluidics
organoids
updated 11 months ago by
Ram
43k • written 5.7 years ago by
aln
▴ 320
0
votes
0
replies
1.7k
views
News:
Final few places left for course "Bioinformatic using Linux"
next-gen
RNA-Seq
gene
genome
SNP
updated 11 months ago by
Ram
43k • written 6.6 years ago by
oliverhooker
▴ 60
0
votes
0
replies
1.6k
views
News:
Course: eDNA Metabarcoding in Canada
next-gen-sequencing
R
updated 11 months ago by
Ram
43k • written 5.6 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.6k
views
News:
Bias, robustness and scalability in single-cell differential expression analysis
RNA-Seq
updated 11 months ago by
Ram
43k • written 6.2 years ago by
Eric Lim
★ 2.1k
0
votes
0
replies
1.6k
views
News:
Training in Computational Drug Design and Discovery @NIH, USA, Dec. 12-15, 2017
discovery
training
computational-drug-design
updated 11 months ago by
Ram
43k • written 6.5 years ago by
AABI
▴ 140
0
votes
1
reply
1.6k
views
News:
Course: RADseq data analysis in Berlin (4-8/12/17). LAST CALL
STACKs
RADseq
updated 11 months ago by
Ram
43k • written 6.5 years ago by
carlopecoraro2
★ 2.5k
2
votes
2
replies
1.6k
views
News:
User-friendly Bioinformatics From RNA Seq to Biological Interpretation
machine-learning
RNA-seq
updated 11 months ago by
Ram
43k • written 5.8 years ago by
sahil
▴ 10
0
votes
0
replies
1.6k
views
News:
Reproducible Bioinformatics Project
genome
ChIP-Seq
next-gen
R
rna-seq
updated 11 months ago by
Ram
43k • written 6.6 years ago by
raffaele.calogero
• 0
1
vote
0
replies
1.6k
views
News:
Machine Learning and Visualization of High-Throughput Biomedical Data
next-gen-sequencing
gene
updated 11 months ago by
Ram
43k • written 5.9 years ago by
sahil
▴ 10
2
votes
1
reply
1.6k
views
News:
BIOSG17 Workshop on High Throughput Computing in Bioinformatics/Biomedicine using OSG
Workshop
OSG
Biomedicine
HTC
updated 11 months ago by
Ram
43k • written 6.7 years ago by
natasha.pavlovikj
▴ 10
0
votes
0
replies
1.6k
views
News:
Phylogenetic Data Analysis In R - 28Jan-2Feb - FINALCALL
R
updated 11 months ago by
Ram
43k • written 6.4 years ago by
oliverhooker
▴ 110
0
votes
0
replies
1.6k
views
News:
Course. Analysis of single cell RNA-seq data.25 February-1 March 2019 in Berlin (Germany)
scRNAseq
RNA-Seq
updated 11 months ago by
Ram
43k • written 5.8 years ago by
carlopecoraro2
★ 2.5k
38
votes
8
replies
1.6k
views
6 follow
News:
What happens when a bioinformatician has his own genome sequenced for $300?
DNAseq
DNA
WGS
updated 10 months ago by
Alex Reynolds
35k • written 10 months ago by
David Langenberger
11k
0
votes
5
replies
1.6k
views
News:
LAST CALL - 'Introduction to NGS Data Analysis' course in Berlin, October 8-10 2018
NGS
training
RNA-Seq
DNA-Seq
updated 11 months ago by
Ram
43k • written 5.9 years ago by
David Langenberger
11k
0
votes
0
replies
1.6k
views
News:
Analysis of single cell RNA-seq data Workshop
R
RNA-Seq
next-gen
updated 11 months ago by
Ram
43k • written 5.5 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.6k
views
News:
Open Targets API upgrades to a new version, v3
API
webinar
drug
open-targets
updated 11 months ago by
Ram
43k • written 6.4 years ago by
Denise CS
★ 5.2k
0
votes
0
replies
1.6k
views
News:
16S/ ITS Metabarcoding course using QIIME2 platform
Metabarcoding
updated 11 months ago by
Ram
43k • written 5.2 years ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
1.6k
views
News:
:: FINALL CALL :: RNA-Seq Data Analysis Workshop for Beginners - Registraion to be closed
NGS
RNA-Seq
Training
updated 10 months ago by
Ram
43k • written 4.4 years ago by
David Langenberger
11k
0
votes
1
reply
1.6k
views
News:
A Personalized, Precise Approach to Fighting Cancer
biotech
cancer
sequencing
ChIP-Seq
RNA-Seq
updated 11 months ago by
Ram
43k • written 6.9 years ago by
Pine Biotech
▴ 70
2
votes
0
replies
1.6k
views
News:
4th Annual Viral Genomics & Bioinformatics Training Course (20-24 August 2018)
next-gen
virus
genomics
course
updated 11 months ago by
Ram
43k • written 6.3 years ago by
super
▴ 60
0
votes
0
replies
1.6k
views
News:
Genome Assembly and Annotation Workshop
annotation
assembly
genome
updated 11 months ago by
Ram
43k • written 5.5 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.6k
views
News:
Course: Advanced Python for Biologists. Berlin (Germany). 13-17 November 2017
Python
NGS
updated 11 months ago by
Ram
43k • written 6.6 years ago by
c.pecoraro3486
▴ 20
5
votes
1
reply
1.6k
views
News:
2-day WORKSHOP on SNAKEMAKE
next-gen
updated 11 months ago by
Ram
43k • written 5.9 years ago by
carlopecoraro2
★ 2.5k
9
votes
4
replies
1.6k
views
News:
Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq
updated 11 months ago by
Ram
43k • written 6.2 years ago by
Laura
★ 1.8k
0
votes
0
replies
1.6k
views
News:
Introduction to bioinformatics for DNA and RNA sequence analysis (IBDR01)
R
next-gen
RNA-Seq
genome
updated 11 months ago by
Ram
43k • written 6.0 years ago by
oliverhooker
▴ 60
0
votes
1
reply
1.6k
views
News:
Trinity Workshop: De novo Transcriptome Assembly, Annotation, and Downstream Expression Studies. Berlin 12-16 June (4 places left)
next-gen
Assembly
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.1 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.6k
views
News:
Registration deadline for 2017 CBW bioinformatics workshops is fast approaching
SNP
ChIP-Seq
Assembly
RNA-Seq
R
updated 11 months ago by
Ram
43k • written 7.1 years ago by
meyer.ann
▴ 30
3
votes
1
reply
1.5k
views
News:
Bioconductor 2017 Conference, Boston, July 26-28
R
conference
Bioconductor
updated 11 months ago by
Ram
43k • written 7.1 years ago by
Sean Davis
26k
5
votes
2
replies
1.5k
views
News:
Google Dataset Search
google
updated 11 months ago by
Ram
43k • written 5.6 years ago by
Pierre Lindenbaum
161k
13
votes
2
replies
1.5k
views
News:
Thank you Biostars!
meta
updated 11 months ago by
Ram
43k • written 5.0 years ago by
Glory Basumata
▴ 140
0
votes
1
reply
1.5k
views
News:
Symposium, Accelerating Biology 9-11, Jan, 2018 : Digitizing Life, Pune, India
symposium
NGS
updated 11 months ago by
Ram
43k • written 6.6 years ago by
lakhujanivijay
5.8k
0
votes
0
replies
1.5k
views
News:
GWAS course
GWAS
R
updated 11 months ago by
Ram
43k • written 11 months ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
1.5k
views
News:
UCSC Genome Browser JSON API
ucsc
json
api
updated 11 months ago by
Ram
43k • written 4.8 years ago by
Pierre Lindenbaum
161k
0
votes
0
replies
1.5k
views
News:
Cell Lines: multi-omics network of associations to model precision treatment
next-gen
precision-medicine
gene
updated 11 months ago by
Ram
43k • written 6.8 years ago by
Pine Biotech
▴ 70
0
votes
0
replies
1.5k
views
News:
Course: Advanced Python for Biologists. Berlin (Germany). 13-17 November 2017
Python
updated 11 months ago by
Ram
43k • written 6.6 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.5k
views
News:
Final Week for Early Bird Prices: Engaging Researchers in Good Data Management - 15th November, Cambridge
conference
research
life-sciences
updated 11 months ago by
Ram
43k • written 6.5 years ago by
Sergio Martínez Cuesta
▴ 230
0
votes
0
replies
1.5k
views
News:
Introducing Omics Logic
NGS
cancer
clincial-research
updated 11 months ago by
Ram
43k • written 6.8 years ago by
Pine Biotech
▴ 70
0
votes
0
replies
1.5k
views
News:
BioVM 18.04 - call for testing and feedback
ubuntu
virtual-machine
linux
biovm
updated 11 months ago by
Ram
43k • written 6.0 years ago by
vimalkvn
▴ 320
0
votes
0
replies
1.5k
views
News:
WORK SHOP Bioinformatics for geneticists and biologists - final few places
Assembly
next-gen
blast
rna-seq
updated 11 months ago by
Ram
43k • written 6.9 years ago by
oliverhooker
▴ 110
0
votes
1
reply
1.5k
views
News:
Live Webinar on RNA-Seq Data Analysis on 28 Feb 2018
splice-variants
RNA-Seq
alignment
Strand-NGS
updated 11 months ago by
Ram
43k • written 6.2 years ago by
Genomics
▴ 70
4
votes
0
replies
1.5k
views
News:
All of Us (NIH) precision medicine research program is now open for enrollment
precision-medicine
updated 11 months ago by
Ram
43k • written 6.0 years ago by
GenoMax
141k
0
votes
0
replies
1.5k
views
News:
Introduction to Python for biologists
Programming
next-gen
updated 11 months ago by
Ram
43k • written 5.7 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.5k
views
News:
Optimizing Single-cell RNA-sequencing Workflows, A webinar hosted by Takara Bio and Formulatrix
clontech
single-cell
microfluidics
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.1 years ago by
thomas.rawlins
• 0
8
votes
6
replies
1.5k
views
News:
Illumina to Acquire Pacific Biosciences
pacbio
illumina
updated 11 months ago by
Ram
43k • written 5.5 years ago by
Istvan Albert
100k
5
votes
0
replies
1.5k
views
News:
Bioinformatics in Google Summer of Code 2018
Ensembl
GSOC
updated 11 months ago by
Ram
43k • written 6.2 years ago by
Emily
23k
0
votes
0
replies
1.5k
views
News:
Eukaryotic metabarcoding (EUKB01)
Metabarcoding
updated 11 months ago by
Ram
43k • written 6.0 years ago by
oliverhooker
▴ 60
6
votes
0
replies
1.5k
views
News:
Now Live: precisionFDA Hidden Treasures - Warm Up Challenge
next-gen-sequencing
updated 11 months ago by
Ram
43k • written 6.8 years ago by
patriciareneecarter
▴ 90
0
votes
0
replies
1.5k
views
News:
Microbiome Data Analysis Using QIIME2 (MBQM01)
RNA-Seq
next-gen
updated 11 months ago by
Ram
43k • written 5.0 years ago by
oliverhooker
▴ 60
900 results • Page
4 of 18
Recent Votes
Answer: Create a new bed file with all pairwise combinations between two other bed files
Answer: Create a new bed file with all pairwise combinations between two other bed files
Answer: Create a new bed file with all pairwise combinations between two other bed files
Answer: Trimming tools - your experience please?
Answer: Trimming tools - your experience please?
Answer: Trimming tools - your experience please?
Comment: PCA plot
Recent Locations •
All
United States,
1 minute ago
Mexico,
2 minutes ago
France,
2 minutes ago
Mexico,
2 minutes ago
Seattle, WA USA,
3 minutes ago
Moscow,
5 minutes ago
Machhagan,
9 minutes ago
Recent Awards •
All
Scholar
to
Alex Reynolds
35k
Popular Question
to
chaco001
▴ 40
Commentator
to
GenoMax
141k
Popular Question
to
rheab1230
▴ 140
Popular Question
to
BioinfGuru
★ 1.7k
Scholar
to
bk11
★ 2.4k
Popular Question
to
vinayjrao
▴ 250
Recent Replies
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
• 0
Oh wow, bedops closest-features, how did I overlook that!! I didn't know about it; thank you! Your awk script is beautiful. This worked per…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
• 0
Thank you Pierre! I'll try this out with my full data set.
Answer: DNA methylation preprocessing
by
cao510927
▴ 30
I happend to see one paper doing the similar thing, share it with you guys, "A systematic evaluation of normalization methods and probe rep…
Answer: Create a new bed file with all pairwise combinations between two other bed files
by
Alex Reynolds
35k
I think Pierre's answer might be correct for your test input, but it doesn't account for the start position of the reference element and so…
Comment: Highest variable features in single cell data
by
bk11
★ 2.4k
You need to be clear about how `Seurat` defines highly variable genes here. Highly variable genes are the genes that have very high express…
Comment: Heatmap and rna-seq
by
GenoMax
141k
Please include a link when you are recommending a tool. There can be programs with similar names.
Answer: Heatmap and rna-seq
by
dsull
★ 5.8k
Check out clustergrammer from Avi Ma'ayan's lab.
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
Ram
43k
Simple: ```r data <- lapply(files, read_tsv) data <- Reduce(merge, data) # or Reduce(full_join, data) ``` <a href="" title="Text added bec…
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
by
ATpoint
82k
You can make each process use a dedicated environment, see https://www.nextflow.io/docs/latest/conda.html#use-existing-conda-environments …
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
BioinfGuru
★ 1.7k
Hi, Just thought I'd share this code snippet here for when each file contains multiple samples. I tried using lapply (as suggested by Ram)…
Comment: Low mapping rate with Salmon
by
i.sudbery
19k
Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
Comment: How to convert plink files to Hapmap Format
by
bk11
★ 2.4k
If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value. https://www.b…
Comment: genome assembly records not present in assembly_summary.txt
by
sapuizait
▴ 10
jesus its in the Genbank file and I was looking at the refseq! I m such a moron - thanks for pointing it out -sorry about that :(
Comment: ScRNA data question
by
bk11
★ 2.4k
I wonder how the `Vlnplots` will look if you normalize the data using `NormalizeData()` function in `Seurat`. The flat line in your plot ar…
Comment: Low mapping rate with Salmon
by
GenoMax
141k
> Does that mean that the reads that are not mapped to my trascriptome are not exons/coding genes? Reads are likely aligning in regions wh…
Traffic: 2310 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6