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900 results • Page 5 of 18
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News: Gene Ontology Official Workshop - Montreal, October 16, 2018
go ontology gene-ontology genomics
updated 11 months ago by 43k • written 5.6 years ago by • 0
1
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0
replies
1.3k
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News: Population Genomics course online
R SNP next-gen
updated 10 months ago by 43k • written 4.1 years ago by ★ 2.5k
1
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2
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1.8k
views
News: Course: Applied Statistics and Bioinformatics with R and Bioconductor
Statistics R Metagenomics Bioconductor
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
1
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2
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1.7k
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News: Workshop: Data analysis in high throughput biology. deadline today (2 places left)
next-gen R RNA-Seq
updated 11 months ago by 43k • written 7.0 years ago by ★ 2.5k
1
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2
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1.7k
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News: Webinar: Generating interpretable maps of single cell chromatin accessibility and RNA-seq datasets with Similarity Weighted Nonnegative Embedding
scRNAseq webinar rna-seq single-cell
updated 11 months ago by 43k • written 5.0 years ago by ▴ 580
1
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0
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745
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News: Check out precision FDA's Featured Expert Blog from Dr. Charles Eaton
biomarker Dupytrens genetic crowd-sourcing
updated 11 months ago by 43k • written 5.2 years ago by ▴ 60
1
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0
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5.1k
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News: Course: Practical GWAS Using Linux and R
next-gen R SNP
updated 11 months ago by 43k • written 7.0 years ago by ★ 2.5k
1
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0
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1.2k
views
News: Hands-on Training on Cloud Computing @ NIH, USA, April 30, 2018
analysis server ngs cloud
updated 11 months ago by 43k • written 6.1 years ago by ▴ 140
1
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0
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922
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News: Advanced R Programming
R
updated 11 months ago by 43k • written 6.1 years ago by ★ 2.5k
1
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1
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1.7k
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News: Bioinformatics for Beginners @NIH, (Bethesda, MD, USA) Feb 13 - 16, 2018
beginners training
updated 11 months ago by 43k • written 6.5 years ago by ▴ 140
1
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0
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984
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News: NCBI Webinar: New Variation Services for Normalizing, Remapping, and Annotating Variants
Variation dbsnp API SPDI Clinvar
updated 11 months ago by 43k • written 5.3 years ago by ▴ 70
1
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0
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437
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Spam: Research Training in Next-Generation Sequencing Data Analysis.
RNA-Seq ChIP-Seq
updated 10 months ago by 43k • written 3.7 years ago by 10
1
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1
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934
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News: Webinar on Extensive Assessment of Gene Fusion Detection, Prioritization, Annotation and Characterization on 11 March 2020
detection webinar RNA-Seq gene-fusion
updated 10 months ago by 43k • written 4.2 years ago by ▴ 40
1
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0
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736
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News: Course: Speciation Genomics in Canada - Quebec City, 2-6 September 2019
snp R next-gen
updated 11 months ago by 43k • written 4.9 years ago by ▴ 40
1
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0
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884
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News: Subchallenge 2 of the precisionFDA NCI-CPTAC Mislabeling Challenge
multiomics omics challenge
updated 11 months ago by 43k • written 5.4 years ago by ▴ 40
1
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0
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436
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News: Good bioinformatics training resources
NGS
updated 10 months ago by 161k • written 10 months ago by ▴ 80
1
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0
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1.4k
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News: Metagenomics course. 9-13 April 2018
omics Metatranscriptomics metagenomics
updated 11 months ago by 43k • written 6.2 years ago by ★ 2.5k
1
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3
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1.2k
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News: 4th Berlin Summer School in NGS Data Analysis - October 5-9, 2020
NGS RNA-Seq DNA-Seq
updated 10 months ago by 43k • written 4.2 years ago by 11k
1
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0
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315
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News: course - Advanced Python Programming
Python-Programming
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
1
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0
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694
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News: SNAKEMAKE course in Berlin. Last places available
Python
updated 11 months ago by 43k • written 5.2 years ago by ★ 2.5k
1
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0
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684
views
News: Bioconductor 3.8 Release Schedule
R bioconductor
updated 11 months ago by 43k • written 5.6 years ago by 87k
1
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1
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193
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News: Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser IGB
updated 7 weeks ago by 43k • written 7 weeks ago by • 0
1
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0
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173
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
updated 17 days ago by 43k • written 20 days ago by ★ 2.5k
1
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0
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168
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News: NCBI's ClinVar now accepting somatic variation data
variation NCBI somatic-variants ClinVar
6 weeks ago by PeterC_NCBI ▴ 410
1
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0
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415
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News: Spatial Omics course
Spatial-Omics Multiplexed-Image-Analysis
updated 6 months ago by 43k • written 8 months ago by ★ 2.5k
1
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0
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638
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News: New precisionFDA data science challenge: Help advance postmarket surveillance techniques for FDA regulated products
R
updated 10 months ago by 43k • written 4.3 years ago by ▴ 150
1
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0
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1.1k
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News: DataTech19 submission deadline and keynotes: Jared Lander, Mine Cetinkaya-Rundel, Debbie Bard
R data-science HPC python conference
updated 11 months ago by 43k • written 5.4 years ago by ▴ 20
1
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0
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999
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News: Phylogenomics course in Berlin
next-gen SNP
updated 11 months ago by 43k • written 6.1 years ago by ★ 2.5k
1
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0
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1.1k
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News: LAST CALL: Advanced Python for Biologists.13-17 November 2017 Berlin
Python-Programming
updated 11 months ago by 43k • written 6.5 years ago by ★ 2.5k
1
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0
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856
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News: hackseqRNA: Computational RNA hackathon, Vancouver BC
hackathon RNA
updated 10 months ago by 43k • written 4.2 years ago by ▴ 50
1
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2
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News: Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
variant-calling rare-disease dna-seq strand-ngs
updated 11 months ago by 43k • written 6.1 years ago by ▴ 70
1
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0
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503
views
News: Course - Introduction to Deep Learning for biologists
Genomics Deep-Learning Python NGS
updated 10 months ago by 43k • written 10 months ago by ★ 2.5k
1
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0
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1.1k
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News: Course: Rstats for biologists in Berlin (LAST CALL)
R statistics biologists
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
1
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0
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916
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News: Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
Assembly training RNA-Seq
updated 11 months ago by 43k • written 5.7 years ago by ▴ 140
1
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0
replies
704
views
News: Bioinformatics for Precision Oncology 2020 Program
cancer-biology RNA-Seq cancer
updated 10 months ago by 43k • written 4.2 years ago by ▴ 10
1
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0
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858
views
News: UniProt: Changes to Proteomes
uniprot proteome
updated 10 months ago by 43k • written 4.6 years ago by ★ 2.4k
1
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0
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301
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News: Course - Introduction to CRISPR
CRISPR Evolution GenomeEditing
8 months ago by carlopecoraro2 ★ 2.5k
1
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1
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1.3k
views
News: Ensembl Perl API course, April 2018
course api ensembl perl training
updated 11 months ago by 43k • written 6.3 years ago by 23k
1
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0
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197
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News: Online course - Introduction to Machine Learning in R for omics data
R Omics MachineLearning StatisticalLearning
3 months ago by carlopecoraro2 ★ 2.5k
1
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1
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272
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News: EMBL Course Hands-on course for sample preparation and data analysis in proteomics
EMBLProteomics
updated 6 weeks ago by • 0 • written 11 weeks ago by ▴ 10
1
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2
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1.7k
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News: NCBI Datasets - try it out!
Assembly refseq genome ncbi
updated 10 months ago by 43k • written 4.1 years ago by ★ 3.7k
1
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0
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1.4k
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News: Advanced Sequencing Technologies & Bioinformatics Analysis Course at CSHL: November 3 - 15, 2020
course sequencing workshop
updated 10 months ago by 43k • written 4.3 years ago by 20k
1
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0
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2.8k
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News: Genomic Data Visualization and Interpretation Workshop
Bioconductor ggplot GenVisR RNA-Seq R
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
1
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0
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1.1k
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News: Crowdsourcing the Advancement of Microbiome Research: precisionFDA & Mosaic Challenges Launched!
next-gen challenge metagenomics
updated 11 months ago by 43k • written 6.2 years ago by ▴ 40
1
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0
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457
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News: Generalized Additive Models in R
R GAMs Courses
8 months ago by carlopecoraro2 ★ 2.5k
1
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0
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2.3k
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News: Multivariate analysis of ecological communities in R with the VEGAN package (VGNR01)
R
updated 11 months ago by 43k • written 6.1 years ago by ▴ 60
1
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0
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1.3k
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News: First near-complete assembly of the bread wheat genome, *Triticum aestivum* - check data/compute resources used
wheat genome
updated 11 months ago by 43k • written 6.5 years ago by 141k
1
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0
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790
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News: OmicsLogic Genomics Training Program starts July 23
genome dna genomics
updated 11 months ago by 43k • written 4.8 years ago by ▴ 340
1
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0
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196
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News: Learn how to create robust bioinformatics pipelines for reproducible and comparable NGS analyses
nextflow pipeline workshop
6 weeks ago by David Langenberger 11k
1
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0
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1.6k
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News: Machine Learning and Visualization of High-Throughput Biomedical Data
next-gen-sequencing gene
updated 11 months ago by 43k • written 5.9 years ago by ▴ 10
900 results • Page 5 of 18
Recent Votes
A: How to process (seems) Agilent microarrry data?
Comment: genome assembly records not present in assembly_summary.txt
Answer: genome assembly records not present in assembly_summary.txt
Answer: PCA plot (Suggestions Needed)
Comment: PCA plot (Suggestions Needed)
Comment: PCA plot (Suggestions Needed)
Comment: PCA plot (Suggestions Needed)
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Recent Replies
Comment: Low mapping rate with Salmon by i.sudbery 19k
Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
Comment: How to convert plink files to Hapmap Format by bk11 ★ 2.4k
If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value. https://www.b…
Comment: genome assembly records not present in assembly_summary.txt by sapuizait ▴ 10
jesus its in the Genbank file and I was looking at the refseq! I m such a moron - thanks for pointing it out -sorry about that :(
Comment: ScRNA data question by bk11 ★ 2.4k
I wonder how the `Vlnplots` will look if you normalize the data using `NormalizeData()` function in `Seurat`. The flat line in your plot ar…
Comment: Low mapping rate with Salmon by GenoMax 141k
> Does that mean that the reads that are not mapped to my trascriptome are not exons/coding genes? Reads are likely aligning in regions wh…
Comment: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File? by cmdcolin ★ 3.8k
the gencode link is broken now but here is a back up of that blogpost on archive https://web.archive.org/web/20130618221342/http://gencodeg…
Comment: Low mapping rate with Salmon by Patadu94 • 0
I'll try to make the decoy file again but I remember you also told me that it is only recommended and not mandatory for running `salmon`. I…
Comment: Low mapping rate with Salmon by Patadu94 • 0
For doing this, should I just look at the log.out.file?
Answer: Heatmap and rna-seq by pinheirofabiano ▴ 10
install.packages("pheatmap") library(pheatmap) setwd("/Users/data_analysis/results") data <- read.table(file…
Comment: Low mapping rate with Salmon by Patadu94 • 0
Thanks for the link GenoMax. But I was wondering, should not alignment and mapping have a similar rate and thus be correlated? In my case I…
Answer: Create a new bed file with all pairwise combinations between two other bed files by Pierre Lindenbaum 161k
bedtools intersect \ -a <(sort -t $'\t' -k1,1 -k2,2n A.bed) \ -b <(awk '{X=250000;P=int($2);printf("%s\t%d\…
Comment: Create a new bed file with all pairwise combinations between two other bed files by J • 0
The command lines I wrote out for you are the ones I actually used. My original reference to bedtools intersect was because I assumed the b…
Comment: ScRNA data question by starswillfade ▴ 10
I just thought it was weird that considering each dot is a cell their expressions were all on a single line instead of being spread out lik…
Comment: ScRNA data question by starswillfade ▴ 10
![enter image description here][1] I am already using Seurat V5 I think. I am using SCTransform as it was recommended by the seurat page. I…
Answer: genome assembly records not present in assembly_summary.txt by GenoMax 141k
Can you clarify what `metainfo` you are referring to? The accession that you refer to does exist in [**GenBank assembly_summary file**][1…
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