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1,000 results • Page
6 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
171
views
Sequence BLAST in plus/minus and plus/plus
blast
CRISPR
strand
sequencing
26 days ago by
salias
• 0
0
votes
5
replies
471
views
different FeatureCounts output for the same data
fpkm
Counts
Rsubread
rna-seq
updated 23 days ago by
Istvan Albert
100k • written 26 days ago by
sehriban.buyukkilic
▴ 10
0
votes
0
replies
148
views
Alternative splicing analysis using SUPPA tool - how to normalise counts?
rna-seq
single-cell
suppa
alternative-splicing
updated 26 days ago by
Ram
43k • written 26 days ago by
newuser2024
• 0
1
vote
2
replies
286
views
alignment result
RNA-seq
samtools
hisat2
25 days ago by
ahmad.sajad4541
• 0
0
votes
0
replies
144
views
AttributeError: module 'scvelo' has no attribute 'pp
loomfile
scvelo
scipy
annData
numpy
26 days ago by
Kash
▴ 110
0
votes
1
reply
197
views
How to solve this RoseTTAFold colaboratory error?
modeling
Google
Colaboratory
RoseTTAFold
protein
updated 26 days ago by
Mensur Dlakic
★ 27k • written 26 days ago by
benguyarenbeyaz98
• 0
2
votes
2
replies
339
views
How to calculate identity percentage between proteins contained in a FASTA file?
protein
FASTA
alignment
updated 26 days ago by
Ram
43k • written 26 days ago by
v.berriosfarias
▴ 140
2
votes
9
replies
953
views
TCGA2STAT Error: Firehose connection
FIREHOSE
TCGA
updated 26 days ago by
LauferVA
4.2k • written 7 months ago by
Gnana
• 0
0
votes
11
replies
731
views
How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq libraries?
STARSolo
scRNA-seq
STAR
snRNA-seq
MGI
24 days ago by
atowns21
• 0
0
votes
1
reply
220
views
Find subcluster under a cluster, find differential genes in one cluster between 2 samples??
clustering
subclustering
scRNAseq
updated 27 days ago by
bk11
★ 2.5k • written 27 days ago by
alphaflylizard
• 0
0
votes
0
replies
125
views
The concept of co-occurrence network structure
co-occurence
microbiome
network
27 days ago by
ohtang7
▴ 40
0
votes
1
reply
214
views
Plot DNA methylation level of DMR on the basis of certain genes
rrbs
methylkit
updated 27 days ago by
GenoMax
142k • written 27 days ago by
Srinka
▴ 20
0
votes
5
replies
439
views
Should I remove unlocalized scaffols in reference genome before alignment?
qualimap
alignment
minimap2
GRCh38
assembly
26 days ago by
njornet
▴ 20
0
votes
0
replies
128
views
Software to calculate RSCU, ENC other than codonw
rscu
codonw
updated 27 days ago by
Ram
43k • written 27 days ago by
SHREYA
• 0
0
votes
0
replies
131
views
Merging replicates from Encode project
CHIP-seq
encode
27 days ago by
Nurken
• 0
1
vote
3
replies
316
views
Filter BAM to keep only alignments at an interval, ignoring reads spliced over
samtools
bam
splicing
27 days ago by
WouterDeCoster
47k
1
vote
3
replies
344
views
some error in building kraken2 database
metagenome
kraken2
26 days ago by
Art1ess
• 0
0
votes
1
reply
221
views
Subset Seurat object from Xenium spatial data
Seurat
Xenium
Spatial
updated 27 days ago by
bk11
★ 2.5k • written 27 days ago by
Susmita Mandal
▴ 110
1
vote
1
reply
219
views
Failed kmer content
kmer
illumina
ngs
updated 27 days ago by
Ram
43k • written 27 days ago by
Kasturi
• 0
0
votes
0
replies
117
views
How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
HMMcopy
Copy-number-analysis
R
updated 27 days ago by
Ram
43k • written 27 days ago by
SSSJec
• 0
0
votes
1
reply
179
views
Identification of Transgene insertion sites
Transgene
Whole-Genome-Sequencing
transgene-sites
updated 28 days ago by
Ram
43k • written 28 days ago by
Cameron.walker9900
• 0
0
votes
8
replies
479
views
Error in cnetplot enrichplot package
R
updated 28 days ago by
Ram
43k • written 28 days ago by
Farhad
• 0
0
votes
0
replies
133
views
Pairwise alignment and Ka/Ks computation
Pairwise-Alignment
Genomics
Ka-Ks
updated 28 days ago by
Ram
43k • written 28 days ago by
maxime.policarpo
▴ 200
0
votes
0
replies
117
views
Analysis of the gene family of a genome.
Genome
gene-family
updated 28 days ago by
Ram
43k • written 28 days ago by
sansan_96
▴ 90
0
votes
0
replies
119
views
File with NCBI summary or Uniprot description
annotation
visualisation
NCBI
Uniprot
RNA
updated 27 days ago by
Ram
43k • written 28 days ago by
Amélie
• 0
0
votes
0
replies
229
views
Meta analysis of two GWAS summary statistics: one study is case-control and the other is quantitative
GWAS
Meta-analysis
updated 28 days ago by
Ram
43k • written 28 days ago by
Pine
▴ 20
1
vote
3
replies
2.5k
views
Problem to remove subset of patients with plink
plink
PED
updated 28 days ago by
chrchang523
10k • written 6.2 years ago by
Ginevra
▴ 10
1
vote
8
replies
569
views
Downsampling fastq file
downsample
fastq
20 days ago by
marco.barr
▴ 130
0
votes
1
reply
176
views
tbtool
tbtool
updated 28 days ago by
Ram
43k • written 28 days ago by
Raman
• 0
0
votes
10
replies
646
views
Low mapping rate with Salmon
RNA-seq
Salmon
Quantification
updated 20 days ago by
i.sudbery
19k • written 28 days ago by
Patadu94
• 0
0
votes
1
reply
172
views
Displaced fragment length distribution in ATAC-seq
ATAC-seq
nucleosome
fragment
updated 28 days ago by
ATpoint
82k • written 28 days ago by
enanoide
• 0
0
votes
0
replies
107
views
Help with finding conferences in immuno-informatics/virology
virology
conferences
immunology
28 days ago by
manaswwm
▴ 510
0
votes
0
replies
99
views
Filtering most similarly expressed gene (contrary to differential expression gene) with NOISeq?
NOIseq
27 days ago by
alifafiq1
• 0
0
votes
0
replies
103
views
How to get somatic variation based on RNA-seq data?
RNA-seq
variation
somatic
28 days ago by
feather-W
• 0
2
votes
4
replies
389
views
interpretartion of a vcf file
calling
genotype
ONT
variant
diploid
26 days ago by
samuelkalandarov2002
▴ 10
0
votes
0
replies
102
views
Annotating single cell data automatically
cell
annotation
single
28 days ago by
Gerard
• 0
0
votes
1
reply
206
views
RNA-seq bacteria contamination
RNA-seq
updated 28 days ago by
GenoMax
142k • written 28 days ago by
sh
• 0
0
votes
0
replies
99
views
Imputation advice
imputation
28 days ago by
kl
▴ 10
0
votes
0
replies
120
views
Trimming best practices for SNP calling
trimming
SNP
trimmomatic
28 days ago by
Enrique
• 0
0
votes
0
replies
93
views
Correct way of reducing predictive model complexity
lasso
glmnet
predictvemodeling
regression
28 days ago by
sativus
▴ 20
0
votes
0
replies
98
views
Difficulties getting **the adjacency file** necessary for **aracne2regulon** function.
VIPER
MARINA
ARACNe
28 days ago by
Biostars2200
• 0
0
votes
0
replies
159
views
CIRIquant: ValueError: file has no sequences defined (mode='rb') - is it SAM/BAM format? Consider opening with check_sq=False
Ciriquant
updated 28 days ago by
Carlo Yague
8.7k • written 28 days ago by
Atul K.
• 0
2
votes
5
replies
550
views
Marking duplicates using UMIs
Deduplication
UMI
updated 28 days ago by
i.sudbery
19k • written 29 days ago by
Lipika
• 0
0
votes
0
replies
159
views
How to extract the mutations specific to cancer after variant annotation
variant-annotation
updated 29 days ago by
Ram
43k • written 29 days ago by
sainavyav22
• 0
0
votes
0
replies
164
views
Bacterial genome alignment with mauve
Bacteria
mauve
genome
29 days ago by
rthapa
▴ 90
0
votes
0
replies
158
views
Reparametrization of .str (param penalty > 100) File from CGenFF for Ligand Simulation in GROMACS
Simulation
CGenFF
Gromacs
VMD
29 days ago by
Mamatha Y S
• 0
0
votes
2
replies
329
views
bam merging for archaic samples
samtools
bam
updated 29 days ago by
Ram
43k • written 4 weeks ago by
Matteo Ungaro
▴ 100
1
vote
0
replies
563
views
The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
Primers
TRINITY
4 weeks ago by
mathavanbioinfo
▴ 90
2
votes
5
replies
801
views
what's the genomic location and name of gene responsible for orange and black patches in calico cats
genomes
updated 4 weeks ago by
Jesse
▴ 770 • written 4 weeks ago by
Ann
★ 2.4k
0
votes
0
replies
212
views
agilent microarray gpl data does not have gene symbol column
microarray
agilent
gpl
updated 4 weeks ago by
Ram
43k • written 4 weeks ago by
mja
• 0
1,000 results • Page
6 of 20
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Answer: Kraken2 database
A: Why gene expression data should be log2 transformed?
Answer: Filter Genome for Specific Sites
Answer: Filter Genome for Specific Sites
Answer: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
The Biostar Herald for Monday, May 20, 2024
Answer: Generating Group/Cluster Lists from fastq files
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Comment: Trimming tool
by
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43k
Please do a few simple Google searches before asking others for help.
Comment: ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
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43k
This post does not fit the theme of this forum.
Comment: ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
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Hi, Congratulations but this is not LinkedIn, we are not a place to showcase your professional accomplishments. This does not fall under t…
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GenoMax
142k
Many (most?) programs related to NGS data analysis produce non-deterministic output (unless they explicitly offer an option to produce dete…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
GenoMax
142k
For those samples it appears that raw data was not submitted. Just an assembly. $ esearch -db biosample -query SAMN08009548 | elink -…
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**I have already tried this code. listSamples with HNSC cancer and smokers. I need at least one supporting material to find out the survi…
Comment: Filter Genome for Specific Sites
by
Anita
• 0
Great, thank you!
Comment: Filter Genome for Specific Sites
by
Anita
• 0
This is unhelpful and doesn't answer my question.
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
Harshita
• 0
It seems that the authors in this paper have used paired-end sequences only for their analysis, and for that, they would also have used the…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
Harshita
• 0
Thank you so much for helping me out in this! I have used most of the sequences that are found in this table. But, some samples like the…
Answer: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
GenoMax
142k
Looks like the samples are from this project: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA320483&o=acc_s%3Aa This table has the SR…
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161k
> My sites are in an Excel file right now ![enter image description here][1] <!-- was an American educator and academic administrator…
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142k
> I have a list of ~1,300 single bp sites Convert your file to plain text [**BED format**][1] (three fields required). Use `bedtools slo…
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sainavyav22
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It worked, Thank you very much!
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I'm unsure you'll be able to identify whole chromosomes that are not core from illumina reads alone. That might be easier to do with a micr…
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