2.5 years ago by
Kyle
▴
10
0
votes
1
reply
793
views
1
vote
3
replies
12k
views
9
votes
2
replies
1.7k
views
updated 2.5 years ago by
lethalfang
▴
160
•
written 2.5 years ago by
samuel
▴
260
5
votes
5
replies
2.0k
views
0
votes
0
replies
949
views
2.5 years ago by
ahnje770
▴
20
0
votes
4
replies
1.6k
views
updated 2.5 years ago by
GenoMax
154k
•
written 4.2 years ago by
nkmalini97
•
0
2
votes
1
reply
1.8k
views
updated 2.5 years ago by
dsull
★
7.7k
•
written 2.5 years ago by
coboyfan12
•
0
4
votes
4
replies
1.3k
views
0
votes
1
reply
1.1k
views
updated 2.5 years ago by
seidel
11k
•
written 2.5 years ago by
Charles Murtaugh
▴
50
0
votes
0
replies
641
views
0
votes
1
reply
2.5k
views
0
votes
2
replies
3.4k
views
2
votes
6
replies
3.6k
views
2.5 years ago by
leenkhoury282
•
0
0
votes
0
replies
719
views
1
vote
4
replies
1.2k
views
0
votes
1
reply
1.0k
views
4
votes
7
replies
3.5k
views
updated 2.2 years ago by
Chris
▴
360
•
written 2.5 years ago by
diqixiaoyaoer
▴
20
0
votes
1
reply
671
views
2
votes
1
reply
1.4k
views
updated 2.5 years ago by
zijian
•
0
•
written 4.3 years ago by
boymin2020
▴
80
6
votes
10
replies
5.8k
views
updated 2.5 years ago by
Ram
45k
•
written 9.6 years ago by
Csaba Kerepesi
▴
350
3
votes
2
replies
1.0k
views
0
votes
1
reply
794
views
0
votes
0
replies
642
views
2.6 years ago by
raquel.ajalik
•
0
5
votes
3
replies
2.4k
views
1
vote
2
replies
2.0k
views
0
votes
4
replies
2.0k
views
2.5 years ago by
kcarey
•
0
2
votes
4
replies
2.5k
views
updated 2.5 years ago by
Zhenyu Zhang
★
1.3k
•
written 2.6 years ago by
jose.sgomez94
•
0
2
votes
7
replies
7.9k
views
updated 2.6 years ago by
Utpal
•
0
•
written 3.3 years ago by
pavelasquezv
▴
50
0
votes
4
replies
2.0k
views
2.5 years ago by
Utpal
•
0
0
votes
2
replies
2.8k
views
3
votes
2
replies
5.7k
views
updated 2.6 years ago by
Pratyay
•
0
•
written 9.9 years ago by
yangyongzhi2008
▴
40
0
votes
2
replies
1.2k
views
2.5 years ago by
kldsajf;ldsj;l
•
0
2
votes
4
replies
1.8k
views
2
votes
1
reply
772
views
1
vote
1
reply
776
views
2.5 years ago by
v.berriosfarias
▴
140
4
votes
6
replies
3.4k
views
2.6 years ago by
bhumm
▴
200
0
votes
2
replies
943
views
0
votes
4
replies
1.5k
views
updated 2.3 years ago by
Ram
45k
•
written 2.6 years ago by
npavliukovec
•
0
2
votes
2
replies
1.5k
views
0
votes
3
replies
1.3k
views
1
vote
3
replies
2.3k
views
1
vote
2
replies
923
views
2.6 years ago by
bestone
▴
30
0
votes
0
replies
712
views
1
vote
0
replies
813
views
0
votes
0
replies
609
views
2.5 years ago by
farzaneafzali
▴
80
4
votes
7
replies
2.2k
views
2.5 years ago by
Apex92
▴
320
0
votes
1
reply
751
views
updated 2.2 years ago by
walsa161
•
0
•
written 2.6 years ago by
shreshta2396
•
0
2
votes
1
reply
1.1k
views
0
votes
0
replies
589
views
2.6 years ago by
parrasevilla.bioinfo
•
0
Recent Votes
Recent Locations •
All
Norway, 31 minutes ago
Turkey, 35 minutes ago
Perth, Australia, 41 minutes ago
Germany, 54 minutes ago
Bologna, 1 hour ago
USA, 1 hour ago
Poland, 1 hour ago
Recent Awards •
All
Teacher to
andres.firrincieli
3.9k
Teacher to
Aleksandra
▴
180
Popular Question to
vernonlim98
•
0
Popular Question to
EagleEye
7.6k
Scholar to
saamhasan55
▴
30
Recent Replies
Comment: DESeq2 on metagenome KO counts
by
Aleksandra
▴
180
I just wrote that I misunderstood your initial question.
Comment: Interpreting genomic features distribution for CUT&RUN peaks
by
rfran010
★
1.7k
If I understand correctly, you see increased signal at TSS sites compared to control (taller peaks in browser). However, 92% of the 450 siS…
Comment: combine VCF from diploid reference/haplotypes for the same sample
by
cmdcolin
★
4.3k
this question is a little similar to your previous question (https://www.biostars.org/p/9614638/). just as added info, here is a tool calle…
Comment: hisat2 error-Paired end reads not equal or lack of RAM/disk space?
by
aj123
▴
130
As mentioned above, I just got the raw fastq files from the ftp site listed.
Comment: DESeq2 on metagenome KO counts
by
ATpoint
89k
This statement makes zero sense in response to what I wrote.
Comment: DESeq2 on metagenome KO counts
by
Aleksandra
▴
180
I focused on the fact that DESeq2 models overdispersion, but overlooked its implicit assumption: normalisation works when the main source o…
Comment: DESeq2 on metagenome KO counts
by
Aleksandra
▴
180
Thank you very much. I mistakenly drew a superficial analogy. I equated KO counters with gene counters.
Comment: DESeq2 on metagenome KO counts
by
ATpoint
89k
Both vst or logcpm will favor expression level (magnitude of counts) rather than differences in a hclust/heatmap. For differences you need …
Comment: DESeq2 on metagenome KO counts
by
ATpoint
89k
The DESeq2 developer has advised many times against DESeq2 for metagenomics. Please search for related posts over at support.bioconductor.o…
Answer: DESeq2 on metagenome KO counts
by
andres.firrincieli
3.9k
I wouldn’t use DESeq2 on aggregated raw counts per KO, because doing so means accepting two pretty big assumptions:
1. All genes with t…
Comment: DESeq2 on metagenome KO counts
by
Aleksandra
▴
180
(I apologise for my previous reply; I wanted to be as detailed as possible)
DESeq2 handles KO counts perfectly well. For a time-series des…
Comment: DESeq2 on metagenome KO counts
by
Aleksandra
▴
180
I apologise for how that sounded; I wanted to be as detailed as possible.
Comment: GUI commercial software for 10x single cell gene expression analysis
by
Istvan Albert
103k
A comment on: "*Wonky analysis is possible even with open-source R libraries.*"
True - and arguably, the risk of a wonky analysis is actua…
Comment: GUI commercial software for 10x single cell gene expression analysis
by
GenoMax
154k
`Trailmaker` likely only supports Parse's evercode data. <br>
`BioTuring` does not appear to have published pricing. <br>
`Rosalind` appear…
Traffic: 3431 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6