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122,026 results • Page
586 of 2441
Sort: Rank
Rank
Views
Votes
Replies
3
votes
6
replies
2.0k
views
What is the Rfam version on Biomart Ensembl?
Rfam
version
Biomart
RNAcentral
4.1 years ago by
p.l.rehorst
• 0
0
votes
0
replies
529
views
Method of calculating DAF
snp
4.1 years ago by
Litier
• 0
0
votes
0
replies
686
views
Extracting coordinates of possibly H bonded solvent molecule using BioPython
Biopython
python
PDBParsing
VMD
updated 2.7 years ago by
Ram
45k • written 4.1 years ago by
GS
• 0
2
votes
4
replies
2.1k
views
Bedfile format deeptools
Genome
DNA
Deeptools
ChIP-seq
updated 4.1 years ago by
Devon Ryan
105k • written 4.1 years ago by
Lalita
▴ 10
2
votes
1
reply
1.4k
views
Update SNP map
assembly
update
SNP
map
updated 4.1 years ago by
tothepoint
▴ 940 • written 4.1 years ago by
Rafael
• 0
2
votes
6
replies
2.3k
views
How to construct circRNA-miRNA-mRNA network using cytoscape
circRNA-miRNA-mRNA-networking
microarray-analysis
4.1 years ago by
Babita Pruseth
• 0
2
votes
4
replies
3.9k
views
List of human protein coding genes with given name (known function?)
RNA-Seq
Annotation
Human
updated 4.1 years ago by
Shicheng Guo
★ 9.6k • written 6.1 years ago by
Adrian Pelin
★ 2.7k
2
votes
3
replies
2.9k
views
Is it possible to do mummerplot with reference and query sequences that have many contigs?
alignment
mummer
mummerplot
updated 4.1 years ago by
Philipp Bayer
8.9k • written 4.1 years ago by
jernej.kralj96
▴ 10
0
votes
0
replies
762
views
GPL arguments in getGEO()
GEO
GEOquery
R
4.1 years ago by
Jeffrey3555054
▴ 20
8
votes
10
replies
4.3k
views
6 follow
Renaming files that contain different numbers using rename command-Linux
linux
coding
updated 4.1 years ago by
Joe
22k • written 4.1 years ago by
tenten
• 0
1
vote
1
reply
1.1k
views
Human tissue expression dataset except GTEx
GTEx
updated 4.1 years ago by
hamarillo
▴ 80 • written 4.1 years ago by
Shicheng Guo
★ 9.6k
0
votes
1
reply
882
views
Truncating alignments in a SAM/BAM file
Alignment
SAM
BAM
updated 4.1 years ago by
GenoMax
154k • written 4.1 years ago by
everj
• 0
0
votes
1
reply
913
views
Where is genotype calls in this dataset?
genotype
snps
updated 4.1 years ago by
Lemire
▴ 940 • written 4.1 years ago by
Nemo
• 0
3
votes
3
replies
1.5k
views
Pfam - get only one representative fasta sequence per family
pfam
fasta
protein
updated 4.1 years ago by
Mensur Dlakic
★ 30k • written 4.2 years ago by
Xylanaser
▴ 80
0
votes
1
reply
1.3k
views
split pdb into submodels
pdb
protein
updated 4.1 years ago by
Mensur Dlakic
★ 30k • written 4.1 years ago by
Xylanaser
▴ 80
6
votes
8
replies
3.7k
views
Is it possible to detect of SNVs and InDels in low coverage WGS (5-10X) data?
mutation
low
WGS
lcWGS
pipeline
somatic
coverage
calling
updated 4.1 years ago by
Cyriac Kandoth
6.1k • written 4.1 years ago by
wangziwei0010
▴ 30
1
vote
1
reply
1.1k
views
Data Storage in Plink Format
ID
plink1.9
fam
plink
updated 2.6 years ago by
Ram
45k • written 4.1 years ago by
conor.breen32
• 0
0
votes
0
replies
784
views
How to find out how many reads were used in contig assembly in metaSPADES?
metaspades
4.1 years ago by
DNAngel
▴ 260
1
vote
1
reply
3.6k
views
How do you interpret Tukey's significance when there is no group clustering alone?
Tukey
4.1 years ago by
DNAngel
▴ 260
1
vote
3
replies
1.7k
views
Can someone explain this Trinity/Chrysalis output warning?
Trinty
de-novo
RNAseq
updated 4.1 years ago by
Philipp Bayer
8.9k • written 4.1 years ago by
nina.maryn
▴ 30
0
votes
2
replies
1.5k
views
Interpreting read coverage over gene body plot
chipster
rseqc
illumina
rna-seq
4.1 years ago by
Mikael
• 0
4
votes
4
replies
2.5k
views
Average Amino Acid Identity (AAI) analysis manually
awk
parallel
sed
AAI
BLAST
4.1 years ago by
fec2
▴ 50
2
votes
1
reply
1.2k
views
PACBIO alignment on IGV
Pacbio
IGV
insertions
updated 4.1 years ago by
Istvan Albert
103k • written 4.1 years ago by
jan
▴ 170
0
votes
0
replies
799
views
Error in methyl kit (differential methylation analysis) in R
epeigenetics
methylation
differential
analysis
R
methylkit
DNA
4.1 years ago by
harshraje19
▴ 50
8
votes
4
replies
4.1k
views
Structural variant breakend
structural-variant
updated 2.1 years ago by
Ram
45k • written 4.1 years ago by
A_heath
▴ 170
1
vote
3
replies
1.6k
views
Genewiz gave me bam files instead of fasta files- can I convert bam to fasta to have a genome assembly?
bam
samtools
fasta
updated 2.0 years ago by
Ram
45k • written 4.1 years ago by
kristina.mahan
▴ 170
1
vote
6
replies
3.1k
views
Input of 173 genes into enrichGO but no pathways are shown
clusterProfiler
RNA-seq
enrichGO
R
updated 4.1 years ago by
ATpoint
89k • written 4.1 years ago by
foxiw
▴ 10
6
votes
7
replies
4.0k
views
FASTQC not showing adapters---cutadapt sanity check---
FASTQC
cutadapt
updated 4.1 years ago by
jared.andrews07
★ 19k • written 4.1 years ago by
mskr_
▴ 20
2
votes
1
reply
2.1k
views
Clustal Omega alignment algorithm - does it account for codons and open reading frames (ORF)?
multiple
alignments
clustal
omega
sequence
updated 4.1 years ago by
Joe
22k • written 4.1 years ago by
manaswwm
▴ 570
0
votes
2
replies
1.1k
views
Where to find public human WGS fastq not from 1KGP?
WGS
public
fastq
data
updated 4.1 years ago by
ATpoint
89k • written 4.1 years ago by
Zeng Jingyu
▴ 80
0
votes
1
reply
1.4k
views
How long running FEELnc_codpot.pl step takes? (FEELnc long-non coding RNAs)
RNA-Seq
updated 4.1 years ago by
Thomas
• 0 • written 5.0 years ago by
SHN
▴ 40
1
vote
2
replies
1.6k
views
What if the number of line in fastq.gz pair files are too different?
fastq
R
SevenBridges
updated 2.6 years ago by
Ram
45k • written 4.1 years ago by
br0104
• 0
1
vote
10
replies
7.2k
views
6 follow
How to solve duplicate rownames error on R
R
updated 4.1 years ago by
Lisa Ha
▴ 120 • written 4.1 years ago by
jbnrodriguez
▴ 30
0
votes
0
replies
599
views
Retrieve codon alignment from the tblast module of biopython
tblast
BLAST
biopython
4.1 years ago by
jeremybaffou
• 0
5
votes
10
replies
4.7k
views
Is it possible to count lines of fastq.gz file in R ?
fastq
R
updated 2.6 years ago by
Ram
45k • written 4.1 years ago by
br0104
• 0
0
votes
0
replies
526
views
Is it okay to cluster rows and columns with a different linkage?
Clustering
R
updated 4.1 years ago by
ATpoint
89k • written 4.1 years ago by
sjunlee89
▴ 10
2
votes
4
replies
1.7k
views
convert genomic bigWig file to transcriptome space
bigWig
bw
4.1 years ago by
noodle
▴ 650
1
vote
0
replies
599
views
Construction of chromosome maps
mapping
duplication
gene
Chromosome
4.1 years ago by
srijac
• 0
0
votes
3
replies
1.5k
views
reference genome for mmu.gff3 (mirbasev22)
miRNA
updated 4.1 years ago by
Hyper_Odin
▴ 320 • written 4.1 years ago by
clizama
• 0
0
votes
0
replies
557
views
The chromatin accessibility in regulatory regions of the rhodopsin gene RHO.
ATAC-Seq
updated 18 months ago by
Ram
45k • written 4.1 years ago by
madhubioinform
• 0
1
vote
0
replies
1.0k
views
CIBERSORT: Run Error
RNA
Immune
CIBERSORT
R
4.1 years ago by
Myung-Gwan
▴ 10
0
votes
0
replies
705
views
Falco indicates that Kmer content FAIL, but there are no Kmer content in fastqc_data.txt
kmer
falco
4.1 years ago by
kamanovae
▴ 100
6
votes
10
replies
5.3k
views
Sorting and writing multifasta entries to new fasta files
BioPython
OrthoFinder
fasta
4.1 years ago by
lachiemck
• 0
4
votes
2
replies
1.2k
views
how do bioinformatic pipelines take into account different sequencing technologies?
pipelines
snakemake
design
technology
sequencing
updated 4.1 years ago by
GenoMax
154k • written 4.1 years ago by
hamarillo
▴ 80
0
votes
0
replies
638
views
STAR counts 0 for all genes with UBUNTU
linux
star
count0
ubuntu
4.1 years ago by
rlatjsgns129
▴ 20
0
votes
1
reply
913
views
How to convert kegg orthology to higher classification?
annotations
rnaseq
4.1 years ago by
N15
▴ 160
0
votes
3
replies
1.3k
views
vcf file analysis
columns
rsid
vcf
position
updated 4.1 years ago by
Ram
45k • written 4.1 years ago by
rheab1230
▴ 150
1
vote
1
reply
878
views
Is raw data from NCBI GEO in the same order as processed data?
geo
microarray
R
updated 4.1 years ago by
Hyper_Odin
▴ 320 • written 4.1 years ago by
mincej20
• 0
0
votes
0
replies
573
views
code for dual sgRNA library design
sgRNA
library
combinatorial
updated 4.1 years ago by
ATpoint
89k • written 4.1 years ago by
abhay.kanodia
▴ 10
0
votes
1
reply
1.1k
views
bed to vcf
liftover
vcf
bed
updated 4.1 years ago by
brunobsouzaa
▴ 840 • written 4.1 years ago by
rheab1230
▴ 150
122,026 results • Page
586 of 2441
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Answer: Discrepancy in Q-score assessment of ONT reads in Nanopore and third-party softw
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Answer: Scientific Names In Blast Output And Databases
Answer: Scientific Names In Blast Output And Databases
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Standard enrichement tools, like Metascape, Enrichr or David assume that under a model of no pathway being particularly involved in what yo…
Answer: Discrepancy in Q-score assessment of ONT reads in Nanopore and third-party softw
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k-tarasov
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Thanks to colindaven answer, I managed to travel by hyperlinks to the source of the discrepancy. It seems that Nanopore tools compute *ave…
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colindaven
8.0k
I agree completely. I think the cause is well discussed here : https://github.com/OpenGene/fastplong/issues/20 `fastplong` currently sti…
Comment: Discrepancy in Q-score assessment of ONT reads in Nanopore and third-party softw
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k-tarasov
• 0
Thank you for answer. No, I am looking at all reads before appllying any filters. There are 2,429,312 raw reads, and in 16s-wf pipeline I …
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154k
Are you only looking at reads that satisfy this filter (which is in your command line in GitHub post) in your `seqkit` and `fastqc` reports…
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From databases dedicated to the specific disorder, GWAS catalog, Disgenet, OMIM and Literature searches across Pubmed.
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3.4k
Provide a vector of representative normal cells from each normal sample in the `norm.cell.names` option.
Comment: Should differential expression analysis be incorporated in cross validation for
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• 0
Thank you! This was very helpful
Answer: What is the length of the longest ORF appearing in reading frame 2 of any of the
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I suppose that this is a good resolution: frame = 2 protein_seq_frame2 = sequence[frame -1:] protein_seq_frame3 = protein…
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This could be caused by the line endings that differ between macOS and Windows. Generally a utility like `dos2unix` can help fix this. You …
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Generally speaking, we are not here to provide code review service and/or fix code for what appears to be a school assignment. If you have …
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