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122,025 results • Page 587 of 2441
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0
votes
3
replies
1.4k
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how to get the name of a protein from a sequence?
proteome
updated 4.1 years ago by 16k • written 4.1 years ago by ▴ 920
3
votes
6
replies
1.8k
views
Hello everyone.How can i do miRNAmeta analysis in plant?thanks alot
RNAseq metaanalysis miRNA plant
updated 4.1 years ago by 45k • written 4.3 years ago by • 0
1
vote
2
replies
954
views
Hi, evryone .How can i get a plant reference genome?
reference genome
updated 4.1 years ago by 16k • written 4.1 years ago by • 0
3
votes
4
replies
1.6k
views
GATK snap calling - combine exome and WGS?
GATK
updated 4.1 years ago by ★ 1.2k • written 4.1 years ago by • 0
1
vote
9
replies
2.2k
views
fasta index file too big for genome browsers
index fasta fai jbrowse2
updated 4.1 years ago by ▴ 600 • written 4.1 years ago by ▴ 10
1
vote
5
replies
2.3k
views
Cutadapt doesn't seem to recognize adapter specific parameters
Cutadapt
4.1 years ago by kyusikkim ▴ 20
3
votes
3
replies
4.4k
views
How to rename fastqs for cell ranger ?
cell genomics count ranger fastq 10x
updated 3.6 years ago by ▴ 30 • written 4.1 years ago by ▴ 10
0
votes
0
replies
612
views
How to deal with differences in sample size for metagenomic diversity based on abundance?
metagenomics sample-size
updated 2.6 years ago by 45k • written 4.1 years ago by ▴ 60
1
vote
6
replies
2.8k
views
Cluster Profiler- enrichGO
clusterProfiler
updated 3.4 years ago by • 0 • written 4.1 years ago by ▴ 20
1
vote
3
replies
4.2k
views
Survival analysis with survminer package in R: change number of decimal places in p-value
survminer survival pval R
4.1 years ago by isd1989 • 0
2
votes
7
replies
1.6k
views
Can I easily download the LOC... numbers of the genes of my peptide sequences?
Gene LOC Peptid
updated 4.1 years ago by 154k • written 4.1 years ago by • 0
0
votes
1
reply
965
views
GSTAr.pl probelm running
CleaveLand4 analysis degradome plant sequencing
4.1 years ago by Rey • 0
0
votes
2
replies
1.1k
views
Help me do a gene enrichment analysis
DEseq2 GSEA Heatmap
4.1 years ago by anasjamshed ▴ 140
3
votes
7
replies
3.2k
views
Snakemake bwa mem
Snakemake bwa
updated 2.8 years ago by 45k • written 4.1 years ago by ▴ 70
0
votes
2
replies
1.6k
views
Get matrix, barcodes and features from H5 file
H5 matrix
4.1 years ago by jonathanpa12 ▴ 10
0
votes
2
replies
4.3k
views
GCTA GREML for WGS with extremely large number of samples and SNPs
GCTA GREML genome
updated 3.2 years ago by • 0 • written 6.7 years ago by ▴ 130
0
votes
0
replies
601
views
for choosing the reference for SNPeff
SNPeff snp reference
updated 4.1 years ago by 154k • written 4.1 years ago by ▴ 60
2
votes
4
replies
2.4k
views
Coverage plot/histogram of a complete genome
bam histogram plot genome Coverage
updated 4.1 years ago by 9.0k • written 4.1 years ago by ▴ 140
0
votes
14
replies
4.1k
views
hisat2 alignment showing 0% aligned but sam file is 6GB in size.
hisat2 alignment
updated 4.1 years ago by 103k • written 4.1 years ago by ▴ 10
0
votes
0
replies
510
views
Comparing Two Different Groups
genomics
4.1 years ago by joe_genome ▴ 70
3
votes
3
replies
1.8k
views
"gt gff3 -sortlines -tidy -retainids" reduce some lines
gff3 genome
4.1 years ago by 153348734 • 0
0
votes
0
replies
795
views
DESeq2 analysis example, opinions?
DESeq2 contrasts matrix_design
4.1 years ago by flalom • 0
0
votes
3
replies
1.5k
views
HTseq header
count Htseq matrix
updated 4.1 years ago by 21k • written 4.1 years ago by ▴ 50
2
votes
2
replies
2.5k
views
How can i export a network from String db page to Cytoscape?
String db Network Cytoscape
updated 4.1 years ago by ▴ 90 • written 4.1 years ago by • 0
3
votes
4
replies
3.9k
views
How to logo-plot sequences of uneven length ?
logo length sequence sequencing
updated 4.1 years ago by ★ 1.7k • written 4.1 years ago by • 0
0
votes
0
replies
667
views
Long vertical colnames in gheatmap are cropped
ggtree gheatmap
4.1 years ago by carmenespinosagongora • 0
1
vote
6
replies
3.3k
views
Finding active or binding site in protein sequence
Protein structure
4.1 years ago by kishorssf91 ▴ 20
2
votes
2
replies
5.4k
views
ggarrange result - all graphs are identical
ggarrange ggplot2 R
updated 2.6 years ago by 45k • written 4.1 years ago by ▴ 80
0
votes
0
replies
745
views
Forum: Loss of Gene Information: Discrepancies between RNA Sequencing, cDNA Microarray, and qRT-PCR
RNA-Seq microarray qRT-PCR
4.1 years ago by Antonio R. Franco ★ 5.2k
0
votes
0
replies
675
views
Protein-protein interaction modeling prediction tools
PPI prediction protein
4.1 years ago by jsw940 ▴ 10
0
votes
3
replies
2.2k
views
Genotyping low read depth sequences using GATK
GATK
updated 4.1 years ago by ★ 1.2k • written 4.1 years ago by ▴ 60
3
votes
4
replies
4.7k
views
Reading methylation without IDAT files downloaded from GEO
Methylation Gene expression omnibus GEO minfi
updated 4.1 years ago by ▴ 10 • written 7.0 years ago by ▴ 300
0
votes
0
replies
618
views
Bathymetric mapping to visualize temperature, chlorophyll-a, and salinity?
Bathymetric mapping GRASS GIS
4.1 years ago by MSRS ▴ 590
1
vote
3
replies
1.3k
views
How to process batches to be able to correct for its effect
batch-correction sample-randomization
updated 4.1 years ago by 13k • written 4.1 years ago by ▴ 110
0
votes
3
replies
1.1k
views
Convert decimal numbers of each snp into genotype in r
snp genotype
updated 2.3 years ago by 45k • written 4.1 years ago by • 0
0
votes
0
replies
601
views
progressiveMauve alignment issues
alignment galaxy genome progressivemauve
4.1 years ago by jmgreenb420 ▴ 10
16
votes
23
replies
15k
views
13 follow
Where can I get ?or how can I make a mappability track for hg38 assembly
sequencing alignment Assembly sequence
4.1 years ago by manojkumar_bhosale ▴ 80
4
votes
2
replies
2.9k
views
Interpreting likelihood ratio tests using DESeq2
RNA-sequencing expression differential DESeq2 R gene
updated 3.5 years ago by ★ 1.3k • written 4.1 years ago by ▴ 20
2
votes
3
replies
2.4k
views
genome browser to check SNP genome build
build snp vcf genome
updated 4.1 years ago by ★ 4.3k • written 4.1 years ago by ▴ 150
1
vote
3
replies
2.7k
views
Unusual sequence quality plots - DADA2 pipeline
sequencing dada2 software error R
updated 4.1 years ago by • 0 • written 5.5 years ago by • 0
0
votes
0
replies
1.3k
views
how to calculate Polymorphic Informative Content (PIC) from a VCF file
PIC VCF R SNP
updated 4.1 years ago by 35k • written 4.1 years ago by • 0
0
votes
0
replies
476
views
Compare both reads of sample
fastqc_report.txt fastqc
updated 4.1 years ago by 13k • written 4.1 years ago by • 0
2
votes
0
replies
4.7k
views
Subclustering work-flow suggestions in Seurat
seurat cluster single-cell
4.1 years ago by learner-MD ▴ 50
0
votes
7
replies
3.6k
views
How to perform gene annotation in kallisto?
Gene kallisto annotation
updated 2.1 years ago by • 0 • written 4.1 years ago by ▴ 120
0
votes
0
replies
726
views
disease symptoms thesaurus
disease thesaurus symptoms
4.1 years ago by Myosotis1979 ▴ 30
0
votes
0
replies
629
views
How to get TAIR IDs from genome coordinates in BED format?
BED ChIPseq Arabidopsis MACS2 RNAseq
4.1 years ago by g.james2 • 0
1
vote
1
reply
1.9k
views
Adding read groups to mark duplicated bam file
Picard GATK
updated 4.1 years ago by ★ 1.2k • written 4.1 years ago by ▴ 300
0
votes
0
replies
932
views
Can I calculate the correlation of hazard ratios of different features for comparative purposes?
prognosis hazard ratio regression concordance cox correlation
4.1 years ago by joker33 ▴ 150
2
votes
2
replies
1.1k
views
How to get a FASTA format file with the DNA sequences of all annotated genes?
fasta sequence-analysis database dataset ncbi
updated 4.1 years ago by ★ 30k • written 4.1 years ago by ▴ 30
0
votes
1
reply
1.1k
views
Duplicates in ICGC expression data
RNA-Seq ICGC
updated 4.1 years ago by • 0 • written 5.1 years ago by ▴ 50
122,025 results • Page 587 of 2441
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Comment: Choosing enrichment analysis tool by Marlene • 0
From databases dedicated to the specific disorder, GWAS catalog, Disgenet, OMIM and Literature searches across Pubmed.
Comment: Cells from normal sample were incorrectly classified as tumor cells using copyk by Arup Ghosh 3.4k
Provide a vector of representative normal cells from each normal sample in the `norm.cell.names` option.
Comment: Should differential expression analysis be incorporated in cross validation for by yordany.perdigon • 0
Thank you! This was very helpful
Answer: What is the length of the longest ORF appearing in reading frame 2 of any of the by fra.r.silvestro ▴ 10
I suppose that this is a good resolution: frame = 2 protein_seq_frame2 = sequence[frame -1:] protein_seq_frame3 = protein…
Comment: HDOCK Server Error! by GenoMax 154k
This could be caused by the line endings that differ between macOS and Windows. Generally a utility like `dos2unix` can help fix this. You …
Comment: What is the length of the longest ORF appearing in reading frame 2 of any of the by Mensur Dlakic ★ 30k
Generally speaking, we are not here to provide code review service and/or fix code for what appears to be a school assignment. If you have …
Comment: Brave: Bioinformatics Reactive Analysis and Visualization Engine by Istvan Albert 103k
We don't have 6 minutes to watch something without even knowing what it does. I would recommend that you provide a brief explanation of wh…
Comment: Brave: Bioinformatics Reactive Analysis and Visualization Engine by Yang • 0
Thanks for the reply, I simply recorded the screen and used brave to integrate fastqc analysis. You can click the link below to view. In ge…
Answer: Variant Normalization by Istvan Albert 103k
The purpose of normalization is to ensure that identical variants are represented identically. When not normalized, the same variants may …
Answer: Should differential expression analysis be incorporated in cross validation for by i.sudbery 22k
Yes, their would potentially be data leakage if you perform the DE before dividing your datasets into folds. Its unclear how much of a prob…
Comment: Brave: Bioinformatics Reactive Analysis and Visualization Engine by Istvan Albert 103k
I visited the website, but I couldn't understand what problem the software solves. You need to do a much better job of communicating the p…
Comment: Choosing enrichment analysis tool by i.sudbery 22k
How have these gene lists been obtained?
Comment: NOVOPlasty assembly fails with “INVALID SEED” using first read as seed by GenoMax 154k
> I used the first read sequence from ERR322446.filtered.A.fq as the seed `ERR322446` appears to be a human sample. Did you convert the …
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> Each individual Snippy run completes successfully and reports multiple variants When you run `snippy-core` there is no reference provid…
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Hi Rob, sorry for the late question. I was wondering though, if I can also quantify transposable elements using oarfish? Should I increas…
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