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Comment: low quality data or file name swapping -- cellranger arc errors when processing
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Do you have the index1 and index2 files?
The file structure should be like
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Sample1_ATAC/
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Hi Kevin,
Thanks for the detailed explanation. Due to the characteristics of the datasets, we initially used very lenient quality control…
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Thank you very much Kevin, it worked!
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In this case the entry notes that this is likely the product of a pseudogene: https://www.uniprot.org/uniprotkb/Q5VTE0/entry and existence …
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Each lab contributes both control and LPS. Example, for cell line A_lab1 did and analysis on control and LPS-6h. Cell line B_lab2 did contr…
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sorry, why some gene names are often lacking though the Uniprot ID is still valid (using biomart)?
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Unfortunately, while it ran without a problem initially, when I checked the run screen today, I saw the following error message (and unlike…
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You can use the [**ID mapping tool**][1] from UniProt site (third ID did not map from the list above):
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Crosspost from related question: https://www.biostars.org/p/9616466/#9616534
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Do you want to compare them by sequence or by function?
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If you're just using the tool for clustering purposes, I think OrthoFinder might be a little clunky and would recommend using something lik…
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Thank you; The problem is let's say in the protein ID column I see `Q5VTE0;P68104;Q05639`
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Very helpful!
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