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122,199 results • Page 631 of 2444
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HMM in Python
python HMM
updated 4.4 years ago by 56k • written 4.4 years ago by ▴ 140
0
votes
1
reply
1.5k
views
KEGG pathways with Blast2GO / OmicsBox
KEGG Blast2GO OmicsBox
updated 4.4 years ago by ★ 2.9k • written 4.4 years ago by • 0
0
votes
2
replies
1.0k
views
Corset error
Trinity Corset
updated 2.7 years ago by 45k • written 4.4 years ago by • 0
8
votes
3
replies
1.2k
views
High throughput protein structure homology prediction
tertiary protein high-throughput structure prediction
updated 4.4 years ago by 154k • written 4.4 years ago by ▴ 30
1
vote
2
replies
955
views
Sort blast result in format 6 by first column
blast unix commands Sort result
4.4 years ago by Elene • 0
0
votes
9
replies
2.1k
views
Join two files by matching columns
join linux
4.4 years ago by er.doug.ragnar ▴ 30
0
votes
1
reply
1.8k
views
Job: Post Doctoral fellow
Bioinformatician Postdoc virome
updated 4.4 years ago by 45k • written 4.4 years ago by • 0
0
votes
0
replies
679
views
Collapse Repetitive FASTA sequence into unique one
mapping Element Repetitive
updated 4.4 years ago by 45k • written 4.4 years ago by • 0
5
votes
3
replies
2.1k
views
bioawk looping to retrieve fasta sequences by seq ID pattern
regex fasta bioawk loop
updated 4.4 years ago by 90k • written 4.4 years ago by ▴ 20
3
votes
3
replies
2.1k
views
Best pre and post alignment / variant calling QC tools for many WGS/RNA samples 2021
fastq vcf bam
4.4 years ago by William ★ 5.4k
2
votes
7
replies
2.3k
views
Human genome hg19 variant calling with bcftools
bcftools samtools variant-calling
updated 2.9 years ago by 45k • written 4.4 years ago by • 0
0
votes
2
replies
1.6k
views
Subset cells by ADT expression
10x adt seurat
4.4 years ago by chi.delta ▴ 40
8
votes
5
replies
1.7k
views
Bioinformatics Definitions
genome
updated 4.4 years ago by ★ 2.9k • written 4.4 years ago by ▴ 70
0
votes
0
replies
694
views
GAPIT Genomic selection using ECMLM
GAPIT Genomic Selection
4.4 years ago by sssss • 0
0
votes
0
replies
1.6k
views
DiffBind Error in if (file.info(peaks)$size > 0) { : missing value where TRUE/FALSE needed
diffBind
4.4 years ago by alexmondaini ▴ 20
2
votes
1
reply
936
views
Extract locus length given locus accession number
genome ncbi API
updated 4.4 years ago by 154k • written 4.4 years ago by ▴ 120
0
votes
0
replies
644
views
Differential expression of microRNAs
Differentally microRNA expressed
updated 4.4 years ago by 90k • written 4.4 years ago by • 0
0
votes
7
replies
2.5k
views
Salmon Quant /SubRead featureCounts Results Total Aligments:0
Annotation Genome HG38 Rna-Seq SubRead
4.4 years ago by santos48 ▴ 40
0
votes
2
replies
1.6k
views
How to export a table from SAS software to Excel
SAS
updated 4.4 years ago by 166k • written 4.4 years ago by ▴ 20
0
votes
0
replies
831
views
Random effect with LMM in EWAS
LMM fixed-effect random-effect EWAS GWAS
updated 15 months ago by 45k • written 4.4 years ago by ▴ 30
1
vote
4
replies
1.7k
views
HISAT2 error message :Could not locate a HISAT2 index corresponding to basename "/mnt/c/mkr-index2/mm10_adera/genome"
hisat2
updated 4.4 years ago by 90k • written 4.4 years ago by ▴ 80
0
votes
0
replies
1.8k
views
Job: Research Scientist Bioinformatics (Germany, full-time, permanent)
research-scientist
updated 2.5 years ago by 45k • written 4.4 years ago by ▴ 120
0
votes
3
replies
1.8k
views
Discussion: Clinical genetics germline variants detection pipeline
NGS GATK clinical pipeline genetics
updated 4.4 years ago by 90k • written 4.4 years ago by ▴ 60
0
votes
0
replies
719
views
GATK SortSamSpark error: Failed to load org.broadinstitute.hellbender.Main
sortsamspark spark gatk
4.4 years ago by dragon940401 • 0
3
votes
2
replies
1.6k
views
How to activate and install bioinformatics software
Biostar-handbook
updated 2.8 years ago by 45k • written 4.4 years ago by ▴ 20
5
votes
6
replies
2.0k
views
Forum: Suggestion of Biostatistics book.
RNA-SEQ R Biostatics
updated 4.4 years ago by ★ 2.9k • written 4.4 years ago by ▴ 30
3
votes
2
replies
1.3k
views
How to know the positions of contigs in a reference genome
mapping positions alignment reference genome contigs
updated 4.4 years ago by 154k • written 4.4 years ago by ▴ 20
0
votes
0
replies
737
views
how can I analyse gender spesific CNV analysis with CNVkit?
diagram gender CNV CNVkit log2
4.4 years ago by enes ▴ 40
0
votes
4
replies
1.4k
views
extract the ids and key values
extract grep
updated 4.4 years ago by 9.3k • written 4.4 years ago by ▴ 80
0
votes
0
replies
951
views
liftover results usage: input bed file and output bed file have different rows, how can I link coordinates between input and output files?
unmapped liftover coordinates relationship
4.4 years ago by wangjinpeng0225 ▴ 30
2
votes
3
replies
3.1k
views
cutadapt: error: unused arguments //not recognizing my sequences when using a loop?
cutadapter
4.4 years ago by Kirsten • 0
1
vote
4
replies
1.6k
views
Divide the genome to vary lengths windows in R
bedtools R BED
updated 4.4 years ago by 45k • written 4.4 years ago by ▴ 40
3
votes
4
replies
1.6k
views
plink2 cannot identify options when looping the chromosomes
plink2 plink
4.4 years ago by okiedokie1208 ▴ 40
2
votes
10
replies
3.3k
views
How to search for genes 100Kb up and downstream of any genomic site
R
updated 4.4 years ago by 36k • written 4.4 years ago by ▴ 50
1
vote
1
reply
806
views
How to extract genes from RNA-seq using its reference genome?
of alignment RNAseq genes list
updated 4.4 years ago by 154k • written 4.4 years ago by • 0
0
votes
0
replies
737
views
CHIPQC problem ( the wrong ReadL and no FragL RelCC)
CHIPQC
updated 4.4 years ago by 154k • written 4.4 years ago by • 0
0
votes
3
replies
3.2k
views
WGCNA: scale-free topology fit indexes are negative
gene r WGCNA
updated 4.4 years ago by 3.9k • written 4.4 years ago by ▴ 10
6
votes
8
replies
3.2k
views
what are the reasons to find so few Differentially expressed genes (DEGs)?
Gene RNA
updated 4.4 years ago by 15k • written 4.4 years ago by ▴ 1000
0
votes
0
replies
762
views
extract exons/introns from multiple fasta files with gene sequences
intron splicing fasta CDS exon
4.4 years ago by ramiroricardo • 0
0
votes
1
reply
2.2k
views
Plink: --keep flag
--keep subset plink
updated 4.4 years ago by 11k • written 4.4 years ago by • 0
1
vote
3
replies
1.7k
views
Error when searching for matches using the PSSM score with proteins (.motif BioPython)
protein motif python biopython
3.3 years ago by Agenor Neto ▴ 10
2
votes
2
replies
1.2k
views
Detecting RNA Editing in Single-Cell RNA-seq
scRNAseq RNAediting
4.4 years ago by fouerghi20 ▴ 90
3
votes
3
replies
1.6k
views
Intrinsically disordered region(IDR) or Intrinsically disordered Protein(IDP)
biopython
updated 4.4 years ago by 22k • written 4.4 years ago by • 0
0
votes
3
replies
3.7k
views
STARsolo --EmptyDrops_CR parameters
RNA-seq alignment STAR
updated 3.8 years ago by • 0 • written 4.4 years ago by ▴ 70
3
votes
3
replies
3.8k
views
Nanopore tutorial for beginners
nanopore
updated 2.7 years ago by 45k • written 4.4 years ago by ★ 1.3k
0
votes
0
replies
623
views
Mitochondrial targeting sequence
mts crispr geneediting gene Sequence
4.4 years ago by chiti.agarwal ▴ 10
3
votes
2
replies
3.4k
views
tools for identifying mitochondrial-targeting sequence in different proteins
alignment sequencing mtp
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 50
9
votes
6
replies
10k
views
6 follow
Quadruplex sequence batch prediction
Quadruplex
updated 2.8 years ago by 45k • written 10.6 years ago by ▴ 50
0
votes
0
replies
653
views
Read distribution tool accounting for read orientation
RNA
4.4 years ago by VHahaut ★ 1.2k
2
votes
1
reply
1.1k
views
Different ab initio 3D structure prediction for same protein sequence by trRosetta
3D protein trRosetta structure prediction
updated 4.4 years ago by ▴ 390 • written 4.4 years ago by ▴ 80
122,199 results • Page 631 of 2444
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Answer: Midpoint rooting IQTREE newick file moves node support around
Answer: Subsetting before QC in Spatial Transcriptomics
Answer: Feature Counts vs Salmon quantification
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Answer: Can i use orthofinder for small protein datasets and not full proteome?
Comment: Comparison of different RNAseq data sets
Comment: ID unifiying across different datasets
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Comment: Subsetting before QC in Spatial Transcriptomics by Kent ▴ 30
Hi Kevin, Thanks for the detailed explanation. Due to the characteristics of the datasets, we initially used very lenient quality control…
Comment: Midpoint rooting IQTREE newick file moves node support around by Luca Arbore ▴ 10
Thank you very much Kevin, it worked!
Comment: ID unifiying across different datasets by GenoMax 154k
In this case the entry notes that this is likely the product of a pseudogene: https://www.uniprot.org/uniprotkb/Q5VTE0/entry and existence …
Comment: Comparison of different RNAseq data sets by DrSmad ▴ 10
Each lab contributes both control and LPS. Example, for cell line A_lab1 did and analysis on control and LPS-6h. Cell line B_lab2 did contr…
Comment: ID unifiying across different datasets by zizigolu ★ 4.4k
sorry, why some gene names are often lacking though the Uniprot ID is still valid (using biomart)?
Comment: snpEff: Unsupported structural variant types by shpak.max ▴ 70
Unfortunately, while it ran without a problem initially, when I checked the run screen today, I saw the following error message (and unlike…
Comment: ID unifiying across different datasets by GenoMax 154k
You can use the [**ID mapping tool**][1] from UniProt site (third ID did not map from the list above): From To P68104 ENSG0000015…
Answer: The geo samples is not having sentrix id and sentrix position. But this informat by yura.grabovska ▴ 890
Crosspost from related question: https://www.biostars.org/p/9616466/#9616534 ``` ##Using R, illuminaio from Bioconductor library(…
Answer: Finding Sentrix ID in HM450K arrays by yura.grabovska ▴ 890
``` ##Using R, illuminaio from Bioconductor library(illuminaio) temp.idat <- readIDAT(file = "200379120087_R02C02_Grn.idat") tem…
Comment: Can i use orthofinder for small protein datasets and not full proteome? by michael.ante ★ 4.0k
Do you want to compare them by sequence or by function? For the later, you can use e.g. InterProScan, KoFamScan.
Answer: Can i use orthofinder for small protein datasets and not full proteome? by dthorbur ★ 3.2k
If you're just using the tool for clustering purposes, I think OrthoFinder might be a little clunky and would recommend using something lik…
Comment: ID unifiying across different datasets by zizigolu ★ 4.4k
Thank you; The problem is let's say in the protein ID column I see `Q5VTE0;P68104;Q05639` here I am sure I should get which `ENSG` for eac…
Comment: How to improving 2-Nucleotide RNA-seq Mapping Accuracy by 2411110159 • 0
Since we do not have real data yet, I tried to simulate this using strand-specific RNA bisulfite-seq reads (C to T). Read1 corresponds to t…
Comment: How to Use Biostars, Part-I: Questions, Answers, Comments and Replies by 2411110159 • 0
Very helpful!
Comment: direct RNA long-reads alignment against reference genome by frarodmar17 • 0
Okay, thanks! I removed reads.fa and I used the index created with minimap2 in .mmi format. Is this correct?
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