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121,984 results • Page 632 of 2440
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3
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10
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2.4k
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how to delete a file 3 months after downloading it in python
python pandas
updated 3.4 years ago by 89k • written 4.3 years ago by ▴ 20
1
vote
1
reply
768
views
Control-FREEC significance
Control-FREEC KolmogorovSmirnov CNVs significance Wilcoxon
updated 4.3 years ago by ★ 3.0k • written 4.3 years ago by ▴ 40
2
votes
2
replies
1.4k
views
What is the general philosophy of softwares for searching mutations ?
software mutations bacteria genome archaea
4.3 years ago by Student ▴ 30
4
votes
3
replies
1.7k
views
Interpretation of reads
interpretation scRNA-seq RNA-seq count-matrix amplification
updated 4.3 years ago by ★ 7.7k • written 4.3 years ago by ▴ 20
0
votes
1
reply
1.3k
views
Duplicate ID in plink
GWAS plink
updated 4.3 years ago by 2.9k • written 4.3 years ago by ▴ 50
0
votes
3
replies
2.9k
views
Velocyto: Not found cell and umi barcode in entry of the bam file
velocyto scRNA-seq UMI RNA
4.2 years ago by bs58 ▴ 10
0
votes
0
replies
1.7k
views
What is Lfq intensity?
Proteomic
4.3 years ago by Lital • 0
1
vote
2
replies
2.6k
views
LOW BUSCO Score for De novo genome assembly
illumina genome assembly reads rna-seq
updated 4.3 years ago by ▴ 600 • written 4.3 years ago by ▴ 160
0
votes
2
replies
2.6k
views
hg38 coordinates for centromeric, subtelomeric and telomeric regions
hg38
4.3 years ago by masaver ▴ 20
0
votes
2
replies
1.2k
views
Where I can download o/e scores in gnomad files?
gnomad pLI oe
4.3 years ago by stb1132 • 0
0
votes
0
replies
868
views
Job: Data stewardship Community Manager
stewardship Data data management
4.3 years ago by Erin Haskell ▴ 470
0
votes
0
replies
808
views
Job: Data Stewardship - Trainer and course developer (two positions)
stewardship data training Data management
4.3 years ago by Erin Haskell ▴ 470
0
votes
1
reply
3.2k
views
how to color positive and negative correlation in Cytoscape
Cytoscape
updated 4.3 years ago by • 0 • written 4.3 years ago by ▴ 480
0
votes
0
replies
688
views
Analyzing differential expression of host genes in RNA-Virus infected cells?
DEG Virus RNA-seq
4.3 years ago by DIG • 0
17
votes
14
replies
3.3k
views
6 follow
Orthologs vs PFAM
ortholog pfam
updated 4.2 years ago by 16k • written 4.3 years ago by ▴ 140
0
votes
2
replies
1.4k
views
Is it correct to merge two raw CEL datasets and then perform quality control, background correction, and normalization on it?
R microarray affymetrix batch-effect quality-control
updated 17 months ago by 45k • written 4.3 years ago by ▴ 80
0
votes
5
replies
1.3k
views
problem: i try to merge reads with seqprep but is not working
seqprep
updated 4.3 years ago by 154k • written 4.3 years ago by ▴ 20
4
votes
4
replies
1.6k
views
flye assembly stuck on 'Aligning reads to the graph'
pacbio genome longread assembly flye
4.3 years ago by jleehan ▴ 120
0
votes
4
replies
3.0k
views
bcftools merge
SNP
4.1 years ago by evafinegan • 0
0
votes
0
replies
557
views
clinker & clustermap
genome
4.3 years ago by Rima ▴ 20
1
vote
1
reply
1.0k
views
Is the use of conform-gt viable if the target data has only one sample?
conform-gt Imputation
updated 4.3 years ago by 2.9k • written 4.3 years ago by • 0
0
votes
1
reply
1.7k
views
Plots for Correlation between two dataframes by row
R
updated 4.3 years ago by 89k • written 4.3 years ago by ★ 1.5k
4
votes
5
replies
3.6k
views
GATK BaseRecalibrator error.. how do I solve this?
GATK NGS WES
updated 4.3 years ago by • 0 • written 4.7 years ago by ▴ 20
1
vote
1
reply
960
views
Tdf to bed
bed igvtools tdf
updated 4.3 years ago by 166k • written 4.3 years ago by ▴ 20
1
vote
2
replies
1.1k
views
Tools for searching user-specified DNA consensous sequence
MEME
4.3 years ago by andres.firrincieli 3.9k
1
vote
1
reply
985
views
Search for pattern within multiple sequence alignement
python search regex sequence-alignment pandas
updated 4.3 years ago by 21k • written 4.3 years ago by ▴ 10
1
vote
1
reply
1.0k
views
How can I solve unknown OTU ids: {1}". Error in PICRUST _Galaxy(Huttenhower lab)
PICRUST python
updated 4.3 years ago by 21k • written 4.3 years ago by ▴ 10
1
vote
0
replies
892
views
Should do Seurat NormalizeData after Cellranger aggr?
scRNA
4.3 years ago by hq.huang11.6 ▴ 10
4
votes
4
replies
4.3k
views
Error: cannot allocate vector of size 22.3 Gb
wgcna memory error R
updated 4.3 years ago by 3.9k • written 4.3 years ago by ▴ 50
2
votes
3
replies
1.5k
views
Scaffolding of bacterial genome assemblies
scaffolding genome annotation bacterial assembly
updated 4.3 years ago by ▴ 600 • written 4.3 years ago by • 0
1
vote
0
replies
472
views
What are the standard strategies for combining multiple publicly avaiable datasets of microarray on the same platform and chips design?
mircoarray Integrative-metaanalysis
4.3 years ago by amay ▴ 10
0
votes
0
replies
635
views
SNP calling in the chrX/Y of HG002/NA24385
son Ashkenazi HG002 NA24385
4.3 years ago by cll710426 • 0
2
votes
7
replies
3.7k
views
trouble with 'too short' reads using STAR. each mate maps fine, but the paired end mapping does not
RNA-Seq alignment
updated 4.3 years ago by 15k • written 4.6 years ago by ▴ 20
0
votes
1
reply
1.3k
views
Plink files from genome studio how
plink Genomestudio
updated 4.3 years ago by 154k • written 4.3 years ago by • 0
0
votes
0
replies
756
views
Merlin haplotyping problem
pedigree inference snps haplotype merlin
4.3 years ago by S. Roa ▴ 10
1
vote
3
replies
1.1k
views
Low percentage explained by PCs
PCA SNPRelate
updated 4.3 years ago by 89k • written 4.3 years ago by • 0
0
votes
0
replies
855
views
GO enrichment analysis in Blast2GO
Ontology Gene Enrichment Blast2GO
4.3 years ago by a.sugi30 • 0
0
votes
1
reply
2.7k
views
Get Rs Number Based On Chromosome and Position in GWAS summary statistics
Annovar rsID geneticposition
updated 4.3 years ago by 89k • written 4.4 years ago by • 0
0
votes
3
replies
1.4k
views
Normalisation of RNA-seq data for coexpression analysis
RNA-seq coexpression normalisation
updated 4.3 years ago by 89k • written 4.4 years ago by • 0
1
vote
7
replies
1.8k
views
For loop STAR not working
RNA-Seq STAR
updated 2.3 years ago by 45k • written 4.3 years ago by ▴ 30
0
votes
1
reply
819
views
How to calculate the SNP score?
SNP SCORE
updated 4.3 years ago by 45k • written 4.3 years ago by • 0
1
vote
2
replies
1.2k
views
Look at Different Locus in the Bam File
Genome HG38 Rna-Seq Nanopore Sequencing
4.3 years ago by santos48 ▴ 40
0
votes
4
replies
1.0k
views
Mapping gene list with chromosome location
R
updated 4.3 years ago by 45k • written 4.3 years ago by ▴ 70
0
votes
2
replies
934
views
Unzipped output files: fasta files in python
fasta python
updated 4.3 years ago by 45k • written 4.3 years ago by ▴ 20
0
votes
8
replies
2.3k
views
Inconsistency in SNP calls using bcftools merge for multiple vcf files
bcftools vcf snp
4.3 years ago by evafinegan • 0
2
votes
1
reply
675
views
Incrementally updating index files for Blast and for Bowtie2
blast index bowtie
updated 4.3 years ago by 154k • written 4.3 years ago by ▴ 30
1
vote
4
replies
2.1k
views
RNA-seq differential analysis with N batches and a technical replicate in each batch
RNA-Seq deseq2 differential analysis edger
updated 4.3 years ago by • 0 • written 5.7 years ago by • 0
0
votes
1
reply
1.7k
views
Five-parameter logistic (5PL) regression - Python or R ?
Bioassay 5PL Python R
updated 4.3 years ago by ▴ 90 • written 4.3 years ago by • 0
4
votes
2
replies
1.1k
views
Presence of proteins in a group of organisms
proteins restriction BLAST
updated 4.3 years ago by 35k • written 4.3 years ago by ▴ 30
2
votes
2
replies
952
views
Unable to read fasta file
fasta
updated 2.5 years ago by 45k • written 4.3 years ago by • 0
121,984 results • Page 632 of 2440
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Answer: ::Last Call:: In-Person Workshop - NGS Epigenomics Data Analysis (November 3-5 i by ecSeq Bioinformatics ▴ 20
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Comment: Difficulty running FoldX in linux by Mensur Dlakic ★ 30k
The program is definitely working. It doesn't matter that it didn't produce `TER` and `END` lines at the end. Those are optional in PDB fil…
Answer: Best set of tools / workflows for predicting the biosynthesis pathways of comple by ehaag ▴ 100
I tried [searching for tools in the NIAID Data Ecosystem][1] and found something that may be relevant. [PathPred][2] is an enzyme catalyzed…
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I did a quick [search for tools in the NIAID Data Ecosystem][1] and found a few that map Illumina short reads onto a reference genome, incl…
Answer: Corresponding BAM files by GenoMax 154k
You can get BAM files for 10x single-cell data and they can be found under the `Data Access` tab of the SRA record under the `Original Form…
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All of the genome assemblies are from the LANL compendiu, match accession with GENBANK (>2,000 complete genome assemblies from the 2021 LAN…
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hisat2_extract...py scripts make several assumptions about the input GTF files. For example, they require gene_id field to be present for a…
Comment: GTF file for HIV strain pNL4-3 by GenoMax 154k
> This project started from my personal need to improve spliced alignment Are there plans to submit these annotations to NCBI/EBI? Are yo…
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Interestingly, HIV/SIV specifically does have quite an elaborate splicing system which regulates translation. However, only one of the spli…
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I'm late to the party but in case someone has the same question: one practical approach is using **rank-based** methods to meta-analyse you…
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I'm late to the party but one practical approach is using **rank-based** methods to meta-analyse your screens, which basically bypass the n…
Comment: convert genome file to transcriptome file by Ales ▴ 50
Should be noted that the gtf/gff and genomic.fna files for HIV only contain CDS annotations of the 9 ORFs and not the full transcripts. Onl…
Comment: GTF file for HIV strain pNL4-3 by Ales ▴ 50
just wanted to follow up that to address this specific issue we just released HIV transcriptome annotations of alternative splicing featuri…
Answer: GTF file for HIV strain pNL4-3 by Ales ▴ 50
For anyone stumbling on this. We have recently completed reference-grade annotation for several thousand HIV-1 genomes including the HXB2 (…
Comment: Dorado in PowerShell on Windows by sbissi102 ▴ 10
Yes, I found all the barcodes, but could working on WSL affect the basecalling results?
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