Limit : all time
all time today this week this month this year
121,915 results • Page 703 of 2439
Sort: Rank
Rank Views Votes Replies
0
votes
1
reply
796
views
Getting ENTREZ GENE IDs for data frame, any help?
R gene Assembly
updated 4.6 years ago by 21k • written 4.6 years ago by • 0
0
votes
1
reply
725
views
Regression - correcting for the same covariate with a different value twice
regression age-correction R
4.6 years ago by ika ▴ 50
0
votes
4
replies
1.4k
views
How to draw survival curve marked at one censoring time for each patient
R survival kaplan-meier
updated 4.6 years ago by 12k • written 4.6 years ago by ▴ 190
2
votes
2
replies
974
views
Plink1.07 generate ERRORs when reading covaries
SNP plink
updated 4.6 years ago by 12k • written 4.6 years ago by ▴ 10
0
votes
3
replies
988
views
get coordinates for a list of genes
RNA-Seq gene
updated 4.6 years ago by 12k • written 4.6 years ago by ▴ 20
12
votes
15
replies
3.1k
views
6 follow
Is there other IDE like R studio working on the linux?
bioconductor Rstudio R
updated 2.5 years ago by 45k • written 4.6 years ago by ▴ 30
2
votes
1
reply
867
views
Ensembl REST to download transcript fastas
ensembl
updated 4.6 years ago by 24k • written 4.6 years ago by • 0
0
votes
0
replies
1.2k
views
Converting 1kHG genomic coordinates from hg37 to hg38 build
python3 CrossMap 1kHG hg37 to hg38
4.6 years ago by AVA ▴ 40
3
votes
3
replies
1.4k
views
scRNA analysis in PDX model
NGS PDX scRNA
4.5 years ago by leedakyung1998 ▴ 10
1
vote
0
replies
2.4k
views
How To Query Snp Against Genomic Features In R
snp genomic
updated 4.6 years ago by 20 • written 11.5 years ago by ★ 1.3k
0
votes
0
replies
820
views
Identification of presence of genes by aligning the illumina reads to reference genome with Geneious
geneious alignment mapping
4.6 years ago by rthapa ▴ 90
0
votes
1
reply
786
views
KEGG enrichment pathway
KEGG
4.6 years ago by amoaristotle • 0
3
votes
1
reply
1.9k
views
Error on Linear regression bulkRNAseq
R linear regression residue
updated 4.6 years ago by 13k • written 4.6 years ago by ▴ 160
0
votes
1
reply
1.9k
views
from phased SNPs to haplotype blocks (or phase sets)
eagle2 statistical phasing haplotype block
updated 4.6 years ago by ▴ 210 • written 5.9 years ago by ▴ 500
0
votes
0
replies
1.2k
views
where to get PBMC (68k) labels?
pbmc single-cell 10x
4.6 years ago by mk ▴ 310
1
vote
8
replies
5.1k
views
PCA plotting using DESEq2 pipeline
RNA-Seq
4.6 years ago by aranyak111 • 0
4
votes
6
replies
4.0k
views
BWA_MEM error "cannot find file.fa.pac" but input is file.fa
alignment
updated 3.6 years ago by • 0 • written 5.9 years ago by • 0
1
vote
3
replies
6.8k
views
ERROR 127: ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory
abyss assembly
updated 4.6 years ago by 20 • written 7.8 years ago by ▴ 20
0
votes
0
replies
925
views
Adding information tags with types, positions and counts of matches and mismatches in every read in the SAM file
RNA-Seq
4.6 years ago by lechu ▴ 20
3
votes
7
replies
7.0k
views
Gene expression heatmap following pseudotime analysis
RNA-Seq
updated 4.6 years ago by 13k • written 4.6 years ago by ★ 2.6k
1
vote
2
replies
1.3k
views
Job: Looking for a programmer well versed in Cytoscape layouts and JavaScript - Remote contract
cytoscape.js
updated 2.3 years ago by 45k • written 4.6 years ago by • 0
1
vote
0
replies
1.4k
views
ssGSEA analysis workflow and interpretation
RNA-Seq
4.6 years ago by salehm ▴ 10
0
votes
1
reply
656
views
How to download TCGA2STAT package?
R
4.6 years ago by msndapaah • 0
0
votes
1
reply
1.4k
views
Confusion of the input format for DESeq2 and EdgeR for bulk- and scRNA-seq
DESeq2 EdgeR RNA-Seq scRNA-seq
4.6 years ago by cwwong13 ▴ 40
0
votes
0
replies
970
views
Getting normalized count/ gene expression matrix for both bulk and single-cell RNA-seq
RNA-Seq scRNA-seq DESeq2 EdgeR
4.6 years ago by cwwong13 ▴ 40
0
votes
0
replies
851
views
Should "dispersion" in edgeR be calculated for entire dataset or just conditions being analyzed?
differential-gene-expression edgeR RNA-Seq
updated 19 months ago by 45k • written 4.6 years ago by ▴ 750
0
votes
1
reply
1.3k
views
Trimming Ion Total RNA-seq Kit v2
RNA-Seq Ion Torrent Trimming Adapters
updated 4.6 years ago by 20 • written 4.6 years ago by ▴ 90
0
votes
1
reply
814
views
DESeq2 for specific genes
deseq2 RNA-Seq R specific genes pathways
updated 4.6 years ago by 15k • written 4.6 years ago by ▴ 40
0
votes
0
replies
685
views
Total number of trimmed reads less than number of mapped reads
alignment next-gen sequence SAMtools BWA
4.6 years ago by kspata ▴ 90
1
vote
2
replies
1.8k
views
Select list of nodes in Cytoscape
Cytoscape Gene Ontology Biological Network
updated 4.6 years ago by ▴ 650 • written 4.6 years ago by ▴ 60
1
vote
1
reply
929
views
Open Linkout with another web browser
cytoscape
updated 4.6 years ago by ▴ 650 • written 4.6 years ago by • 0
0
votes
0
replies
1.5k
views
Calculating ROHs and Heterozygosity from GATK
ROHs GATK Heterozygosity
4.6 years ago by gubrins ▴ 350
3
votes
5
replies
1.4k
views
Microarray data from different sets but same platform
microarray R gene Affymetrix
updated 4.6 years ago by ★ 1.2k • written 4.6 years ago by ▴ 10
2
votes
3
replies
1.2k
views
want to extract all column which have particular value
extract awk
updated 4.6 years ago by • 0 • written 4.6 years ago by ▴ 40
0
votes
2
replies
1.3k
views
On understanding the axis of a PCA plot
pca
updated 4.6 years ago by ★ 4.8k • written 4.6 years ago by ▴ 390
7
votes
8
replies
2.3k
views
[RNA-seq] Extremely Unconsistent Raw Count from Different Tools; a dark mistery
RNA-Seq alignment counts
updated 4.6 years ago by 22k • written 4.6 years ago by ▴ 120
132
votes
44
replies
45k
views
16 follow
Forum: Trimming adapter sequences - is it necessary?
NGS adapter RNA-Seq
updated 2.5 years ago by 45k • written 9.0 years ago by ★ 1.1k
0
votes
0
replies
1.7k
views
Job: Senior Research Scientist: Bioinformatician specialising in bacterial genomics (Maternity cover)
genome
updated 2.5 years ago by 45k • written 4.6 years ago by • 0
0
votes
1
reply
1.4k
views
Effective subsampling of BAMs
BAM sampling
updated 4.6 years ago by 89k • written 4.6 years ago by ▴ 30
0
votes
9
replies
2.2k
views
BBMap not mapping reads to sequences known to exist in reference
alignment
updated 4.6 years ago by 153k • written 4.6 years ago by ▴ 110
1
vote
2
replies
1.4k
views
Script for XP-EHH, EHH and iHS tests and phasing vcf file that works on all chromosome concurrently
WGS Pooled-Seq XPEHH EHH iHS
4.6 years ago by taniamahmood38 ▴ 60
0
votes
2
replies
1.1k
views
Get fasta sequences with Biopython
sequence genome
4.6 years ago by florian.grosmaire • 0
0
votes
0
replies
669
views
Feature Vector for drugs
drug feature vector ddi neural network
4.6 years ago by srijanibagchi • 0
0
votes
1
reply
2.2k
views
AssertionError: not all umis are the same length(!): 4 - 5
umitools RNA-Seq umi
updated 4.6 years ago by 12k • written 4.6 years ago by • 0
0
votes
3
replies
852
views
Can you use high quallity annotation of very closely related to annotation novel genome
annotation
4.6 years ago by robert.murphy ▴ 110
0
votes
1
reply
937
views
Job: Hiring: Bioinformatician at MiroBio, Oxford, UK
bioinformatician
updated 2.5 years ago by 45k • written 4.6 years ago by • 0
0
votes
3
replies
2.2k
views
Creating HTO Count Matrix for Demultiplexing
single cell cell hashing cite seq
updated 4.6 years ago by ▴ 10 • written 4.6 years ago by ▴ 90
0
votes
0
replies
929
views
Connection between Viterbi, Needleman Wunsch and Baum-Welch Algorithm
alignment sequencing viterbi baum-welch
4.6 years ago by trinityduke100 ▴ 10
0
votes
3
replies
1.2k
views
best transformation for large RNAseq dataset
RNA-Seq DESeq2 normalization transformation VST
4.6 years ago by loipf • 0
1
vote
2
replies
2.0k
views
How to download a list pdb codes contained in a csv file using
Biopython
updated 17 months ago by 45k • written 4.6 years ago by ▴ 10
121,915 results • Page 703 of 2439
Recent Votes
Answer: Different UMAP for batch correction in R and Pytho
Answer: Genome Assembly QC from BAM files
Answer: Genome Assembly QC from BAM files
Comment: Variant analysis for mouse WES
Comment: Why is academic software hard to install?
A: Concatenate multiple MUSCLE alignment result to build a phylogenetic tree
Comment: Different UMAP for batch correction in R and Pytho
Recent Locations • All
Danemark - SDU, just now
France, 1 minute ago
United Kingdom, 6 minutes ago
Austria/Vienna, 6 minutes ago
Italy, 6 minutes ago
Germany, 7 minutes ago
Bologna, 10 minutes ago
Recent Awards • All
Popular Question to akshay ▴ 10
Scholar to colindaven 7.9k
Popular Question to Mark ▴ 60
Popular Question to alba • 0
Popular Question to sarahmanderni ▴ 130
Scholar to benformatics 4.2k
Teacher to antonioggsousa 3.4k
Recent Replies
Answer: vcf multisample by Pierre Lindenbaum 166k
eg : https://ega-archive.org/datasets/EGAD50000001683 > Merged VCF file from sporadic Meniere disease cohort (found using https://dat…
Comment: Genome Assembly QC from BAM files by GenoMax 153k
Since this saga has been on going for a long time, it will be helpful to add a comment as to how you finally got to this point of what seem…
Comment: Methods to analyse structural similarity: co-evolution vs convergence by dthorbur ★ 3.1k
A few comments. 1. Coevolution of a trait between 2 organisms can end up with a convergent structure with another organism. It's not e…
Comment: Genome Assembly QC from BAM files by SomeOne ▴ 240
Thank you. Based on the description these two look really what i wanted to see.
Comment: miRNA low mapping ratings by i.sudbery 22k
Also, can you just clarify that the output above is from cutadapt or form miRDeep2?
Comment: miRNA low mapping ratings by i.sudbery 22k
What happens if you remove the `--minimum-length` requirement to cutadapt, and then run fastqc on the result - what size disitribution do y…
Answer: Genome Assembly QC from BAM files by colindaven 7.9k
You can have a look at the tools in the PAQman pipeline https://github.com/SAMtoBAM/PAQman, and maybe also Inspector https://github.com/Mag…
Comment: [vg giraffe] Unable to add read group to BAM file by Arup Ghosh 3.4k
I didn't find any documentation related to the formatting, but it seems `vg` only supports strings in the following format. The BWA style y…
Comment: Concatenate multiple MUSCLE alignment result to build a phylogenetic tree by san96 ▴ 190
Hi Mensur, sorry for this but I'm a little stuck. I’m trying to build a species tree for the first time and I would like to clarify a few …
Comment: Tried building a compact sequence format with 4-bit storage by Alex Reynolds 36k
In addition to looking at other tools as a baseline: https://en.wikipedia.org/wiki/Compression_of_genomic_sequencing_data maybe also look i…
Comment: Different UMAP for batch correction in R and Pytho by Madiha ▴ 20
Thanks, António for a helpful, detailed response. I didn't take into consideration that the plotting order of cells from each batch can be …
Comment: [vg giraffe] Unable to add read group to BAM file by saruman • 0
It seems that using the following format fixes the problem: --read-group "1 SM:HG002 LB:lib1 PL:illumina PU:unit1" As shown below: …
Comment: Developing a genomics ML model using bytes? by dariober 15k
> what if we can use the bytes to develop a model? My understanding is that the OP is considering building a model using the sequences in …
Comment: WGCNA package in R: dendogram plot error by RJ • 0
You might had delete the outliers from the expression table but then the traits data.frame doesn't match with expression table dimensions.
Comment: miRNA low mapping ratings by Ant ▴ 50
No, it's a personal dataset. I haven’t seen the link, but if I understand correctly, it's not possible to use the software for free, right?
Traffic: 4033 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6