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121,919 results • Page 706 of 2439
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Biomart mmusculus_gene_ensembl mm39
assembly genome R
updated 3.6 years ago by 45k • written 4.6 years ago by ▴ 10
0
votes
0
replies
876
views
Gtex - how to interpretate NES
SNP Database
4.6 years ago by philosophical.raptor111 • 0
2
votes
12
replies
3.3k
views
Convert Braker2 gff3 to EMBL flat file for ENA submission
genome assembly gene Assembly
4.6 years ago by m.eitel • 0
2
votes
1
reply
2.0k
views
hapcut2 output and figures
phasing hapcut2
updated 4.6 years ago by ▴ 210 • written 6.0 years ago by ▴ 610
0
votes
2
replies
765
views
Remove text flanking .. on fasta-headers
alignment fasta
updated 4.6 years ago by 11k • written 4.6 years ago by • 0
0
votes
1
reply
1.2k
views
Add features on newick tree (then by creating a NHX format)
newick nhx phylogeny python r
4.6 years ago by Chvatil ▴ 140
0
votes
4
replies
961
views
How to convert WGS data to microarray format?
WGS microarray
4.6 years ago by kamanovae ▴ 100
0
votes
1
reply
4.1k
views
How to subset SummarizedExperiment object with multiple experiments?
RNA-Seq R
updated 4.6 years ago by 20 • written 4.7 years ago by • 0
0
votes
0
replies
629
views
Database for signalling pathway agonists and antagonists?
database gene
4.6 years ago by Pratik ★ 1.1k
0
votes
0
replies
1.3k
views
DMRcate: extractRanges error
DMRcate
updated 2.3 years ago by 45k • written 4.6 years ago by • 0
0
votes
1
reply
874
views
Virtual Box of VEP tool for windows
vep ensembl virtualbox
updated 2.3 years ago by 45k • written 4.6 years ago by • 0
0
votes
0
replies
531
views
Branch Specific Ka/Ks
genome gene alignment
4.6 years ago by pratanukayet1 • 0
0
votes
0
replies
833
views
'map' error sequenza from Strelka vcf.somatic.snvs in python 3.8 and tier 1 or 2?
software error
4.6 years ago by heetak.lee • 0
0
votes
0
replies
718
views
Finding out genes belonging to modules
wgcna rna-seq r R next-gen
4.6 years ago by reara ▴ 30
19
votes
21
replies
49k
views
11 follow
R org.Hs.eg.db matching ensembl gene ids with gene symbol
bioconductor R
updated 4.0 years ago by ▴ 10 • written 9.6 years ago by ▴ 340
0
votes
4
replies
959
views
Getting 0 bytes or 1 line from galaxy
sequence
4.6 years ago by dreamfeathers08 ▴ 10
0
votes
0
replies
980
views
How find the best model for calculate dN/dS with big data (727 sequences)?
gene PAML CODEML evolution sequence
4.6 years ago by mauricio.1313 • 0
2
votes
11
replies
7.3k
views
BLAST nr database
BLAST nr database
updated 2.9 years ago by 45k • written 5.7 years ago by ▴ 10
0
votes
0
replies
458
views
mutation analysis, somatic alteration, gene
genome gene
4.6 years ago by Rob ▴ 180
1
vote
2
replies
3.9k
views
HISAT2 Error Building Index
hisat2 RNA-Seq
updated 4.6 years ago by 20 • written 5.9 years ago by ▴ 110
1
vote
5
replies
2.0k
views
find unique sequences among a set of fasta entries
alignment BLAST genome repeat
updated 4.6 years ago by ★ 30k • written 4.6 years ago by • 0
0
votes
0
replies
803
views
What are the various KEGG pathway interaction types?
kegg pathway systems biology R graphite
4.6 years ago by chaperoneline ▴ 10
0
votes
0
replies
817
views
What does prot_id and prot_coords represent in Trinotate output
Trinotate prot_id prot_coords
4.6 years ago by Kash ▴ 110
2
votes
4
replies
3.5k
views
LEfSe for multiple samples
RNA-Seq metagenomics environmental genomics
updated 4.6 years ago by 35k • written 4.6 years ago by ▴ 50
2
votes
2
replies
1.1k
views
Error in getBM: accessing Ensembl annotation with biomaRt
RNA-Seq genome R gene Assembly
4.6 years ago by celia.escher ▴ 20
1
vote
0
replies
715
views
gam format details
vg
4.6 years ago by mirko1998coggi ▴ 10
4
votes
5
replies
6.0k
views
Version history and design files for exome kits from Agilent, Roche(Nimblegen), and Illumina
exome agilent roche nimblegen illumina
updated 4.6 years ago by ▴ 210 • written 7.9 years ago by ★ 2.1k
0
votes
0
replies
818
views
Job: HIRING: Nanopore Production Specialist
genomics nanopore sequencing
updated 2.5 years ago by 45k • written 4.6 years ago by ▴ 30
5
votes
6
replies
7.9k
views
scatter plot, aov()
aov scatter-plot anova
updated 17 months ago by 45k • written 4.6 years ago by ▴ 180
3
votes
3
replies
1.7k
views
is there a kind of package like Bio::Trace::ABIF in python?
abif sanger perl python
updated 4.6 years ago by ★ 30k • written 4.6 years ago by • 0
2
votes
3
replies
1.4k
views
RNAseq analysis with deseq1, deseq2, and edgeR. Is the same number of replicates needed in each group?
rna-seq
4.6 years ago by arturo.marin ▴ 20
0
votes
0
replies
601
views
Multiple Sequencing Platforms, One Interval File?
WES sequencing GATK
4.6 years ago by jon.klonowski ▴ 210
0
votes
0
replies
696
views
possiblity of using SingleCellSignalR for bulk RNAseq data
RNA-Seq SingleCellSignalR
4.6 years ago by adR ▴ 130
1
vote
3
replies
4.0k
views
Working With Phastcons Files
galaxy
updated 4.6 years ago by 20 • written 12.4 years ago by ▴ 680
0
votes
7
replies
11k
views
GEO datasets-Single cell RNAseq analysis using seurat
RNA-Seq
updated 2.2 years ago by 166k • written 4.6 years ago by • 0
3
votes
3
replies
908
views
Filtering RNAseq data of one sample from two different species
rna-seq
4.6 years ago by arturo.marin ▴ 20
20
votes
4
replies
2.8k
views
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2020?
papers survey SNP
updated 2.6 years ago by 45k • written 4.6 years ago by ★ 1.5k
0
votes
0
replies
599
views
Building Human Gene Annotation File from Gene Primers
RNA-Seq alignment primer Gene Annotation
4.6 years ago by razeeebuet • 0
0
votes
0
replies
1.4k
views
Eigenstrat to VCF
VCF Eigenstrat aDNA format
4.6 years ago by sahahig469 ▴ 10
1
vote
2
replies
1.8k
views
Agilent SureSelect V5 adapters for WES
sequencing next-gen wes library
4.6 years ago by Rick P ▴ 20
0
votes
3
replies
2.0k
views
ERROR with METAL
gwas metal meta-analysis error
updated 4.6 years ago by • 0 • written 4.7 years ago by • 0
0
votes
2
replies
711
views
Use of Two Dual Indexed Adapter
sequencing
4.6 years ago by atitparajuli2018 • 0
1
vote
5
replies
1.6k
views
Survminer DataFrame creation
survminer survival Kaplan-Meier curve R
updated 4.6 years ago by 12k • written 4.6 years ago by ▴ 30
0
votes
0
replies
1.1k
views
Correlation heatmap for ChIP-seq data: Pearson or Spearman?
ChIP-Seq correlation deeptools
4.6 years ago by Marco Pannone ▴ 810
7
votes
9
replies
3.3k
views
How do I effectively automate BLAST searches without using a local database?
BLAST Python
updated 4.6 years ago by 15k • written 4.6 years ago by ▴ 20
3
votes
0
replies
1.1k
views
News: Free Ensembl Browser and REST API virtual workshops in March
Ensembl REST-API genome-browser training workshop
updated 2.6 years ago by 45k • written 4.6 years ago by ▴ 270
1
vote
1
reply
862
views
Error: mysql table already exists! Is it safe to delete the tables in mysql manually?
MYSQL
4.6 years ago by mthm ▴ 80
0
votes
2
replies
907
views
hardware for SNV analysis
next-gen SNV HPC server traditional processing
4.6 years ago by rajeefa ▴ 10
1
vote
11
replies
3.7k
views
Segmentation fault (core dumped) error with bigWigAverageOverBed
bigWigAverageOverBed RNA-Seq
updated 4.6 years ago by 20 • written 4.7 years ago by ▴ 50
1
vote
0
replies
1.0k
views
Forum: Help EMBL-EBI maintain its services: articulating the value of open data
embl-ebi open-data
updated 2.5 years ago by 45k • written 4.6 years ago by 24k
121,919 results • Page 706 of 2439
Recent Votes
Answer: [vg giraffe] Unable to add read group to BAM file
Comment: [vg giraffe] Unable to add read group to BAM file
Answer: [vg giraffe] Unable to add read group to BAM file
Answer: vcf multisample
Answer: vcf multisample
Answer: vcf multisample
Answer: Different UMAP for batch correction in R and Pytho
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Recent Replies
Comment: Help with species tree with orthofinder, iqtree and branch labeling by GenoMax 153k
> I don’t have clear species labels in my headers, only sequence IDs. I have not used iqtree, so this is only a thought ... should it be y…
Comment: Help with species tree with orthofinder, iqtree and branch labeling by san96 ▴ 190
Thank you so much.
Comment: [vg giraffe] Unable to add read group to BAM file by saruman ▴ 10
Yes, it seems so. Thank you.
Comment: cellranger mkref fail/error by GenoMax 153k
> The thing is that I do not have a genome for these organisms. That is not what `cellranger mkref` is expecting. You could consider alt…
Comment: cellranger mkref fail/error by tatsispolychronis • 0
The thing is that I do not have a genome for these organisms. i made a transcriptome using TRinity and this is what I am feeding it. I do n…
Comment: Genome Assembly QC from BAM files by SomeOne ▴ 240
Hi, I am not sure if i can call them good assemblies. Although based on QUAST and BUSCO stats, everything looks too good but somehow i hav…
Comment: cellranger mkref fail/error by GenoMax 153k
You need to provide the genome reference for the `--fasta` option as noted in https://www.10xgenomics.com/support/software/cell-ranger/late…
Answer: Methods to analyse structural similarity: co-evolution vs convergence by Joe 22k
Without historical data (ancient DNA) there's no way to ever really know this for certain. The best we can do is make inferences based on t…
Answer: vcf multisample by Pierre Lindenbaum 166k
eg : https://ega-archive.org/datasets/EGAD50000001683 > Merged VCF file from sporadic Meniere disease cohort (found using https://dat…
Comment: Genome Assembly QC from BAM files by GenoMax 153k
Since this saga has been on going for a long time, it will be helpful to add a comment as to how you finally got to this point of what seem…
Comment: Methods to analyse structural similarity: co-evolution vs convergence by dthorbur ★ 3.1k
A few comments. 1. Coevolution of a trait between 2 organisms can end up with a convergent structure with another organism. It's not e…
Comment: Genome Assembly QC from BAM files by SomeOne ▴ 240
Thank you. Based on the description these two look really what i wanted to see.
Comment: miRNA low mapping ratings by i.sudbery 22k
Also, can you just clarify that the output above is from cutadapt or form miRDeep2?
Comment: miRNA low mapping ratings by i.sudbery 22k
What happens if you remove the `--minimum-length` requirement to cutadapt, and then run fastqc on the result - what size disitribution do y…
Answer: Genome Assembly QC from BAM files by colindaven 7.9k
You can have a look at the tools in the PAQman pipeline https://github.com/SAMtoBAM/PAQman, and maybe also Inspector https://github.com/Mag…
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