Limit : all time
all time today this week this month this year
121,919 results • Page 707 of 2439
Sort: Rank
Rank Views Votes Replies
0
votes
1
reply
1.2k
views
Job: PhD Project in "Systems biology approach for elucidating bacterial revival after antibiotic treatment"
PhD
updated 2.3 years ago by 45k • written 4.6 years ago by ▴ 30
0
votes
0
replies
708
views
Where can we get UMLS concept ids if I have MedDRA preferred Terms
umls meddra
updated 4.6 years ago by 153k • written 4.6 years ago by • 0
1
vote
1
reply
1.3k
views
Comparing results from two different DESeq analyes
DESeq2 RNA-Seq pair-wise analyses R
updated 4.6 years ago by 22k • written 4.6 years ago by ▴ 50
0
votes
1
reply
1.2k
views
How many INDELs and SNPs should I expect in vcf file and what the best parameters to filter false positives?
variants WES WGS
updated 4.6 years ago by 24k • written 4.6 years ago by ▴ 30
3
votes
5
replies
5.0k
views
VEP is very slow. Fork doesnt seem to work
vep annotation
4.3 years ago by nhaus ▴ 420
0
votes
0
replies
533
views
Quantify low complexity regions in DNA sequences
NGS mapping
4.6 years ago by Glubbdrubb • 0
0
votes
1
reply
1.1k
views
How do I add a GENSCAN track to the Ensembl Gene Summary
Ensembl genscan
updated 4.6 years ago by 24k • written 4.6 years ago by ▴ 70
0
votes
0
replies
835
views
How to find the location of snps in a gene, whether it is in the promoter, intron, exon or 5'UTR region?
SNP R gene genome
updated 4.6 years ago by 24k • written 4.6 years ago by ▴ 20
0
votes
0
replies
534
views
SVDetect gives "Killed: 9" when I try to run it
assembly next-gen software error
4.6 years ago by giusdalt95 ▴ 10
0
votes
0
replies
652
views
beast V2.6.3: how to add birth-death-collapse prior to beast xml config file
beast DISSECT BEAUti
4.6 years ago by Yanpeng Chen ▴ 10
0
votes
1
reply
1.2k
views
Multiple alleles in REF and ALT in VCF file
vcf allele indel bcftools vcftools
updated 4.6 years ago by 20 • written 4.7 years ago by ▴ 180
0
votes
0
replies
701
views
Polygenetic Risk scores
SNP gene
4.6 years ago by shubhamkumbhar420 ▴ 40
9
votes
6
replies
6.8k
views
Limma package, how to correct by age and sex?
microarrays limma batch-effect
updated 19 months ago by 45k • written 6.3 years ago by ▴ 30
2
votes
0
replies
916
views
Is it possible to apply limma on metabric data?
limma metabric mRNA DEG
4.6 years ago by DareDevil ★ 4.4k
0
votes
0
replies
1.1k
views
Pymol visualisation issue
pymol PLIP Protein-Ligand Interaction Profiler
4.6 years ago by amoltej ▴ 100
0
votes
0
replies
905
views
Adjustment of number of mutations of 3'UTR region for UTR length
UTR SNV RNA-Seq genome sequence
4.6 years ago by Thind amarinder ▴ 340
0
votes
3
replies
1.1k
views
Why LASTZ Align Sequences in a So Long Time
LastZ alignment
4.6 years ago by yunzhe.jiang97 • 0
0
votes
2
replies
3.6k
views
What is KEGG BRITE ?
kegg pathways metabolism
updated 4.6 years ago by ★ 1.4k • written 5.4 years ago by ▴ 70
1
vote
6
replies
2.0k
views
Plot phylogenetic tree with all ancestor nodes
phylogenetic tree R ape
4.6 years ago by AfinaM ▴ 30
6
votes
13
replies
3.2k
views
Implementation of python function
DNA python PDB
updated 4.6 years ago by 20 • written 4.7 years ago by ▴ 140
0
votes
2
replies
885
views
Need help on installing poretools
software error
4.6 years ago by dreamfeathers08 ▴ 10
0
votes
1
reply
1.2k
views
Forum: What is the relationship between Medical Science & Computing (MSC) and NIH?
career
updated 2.5 years ago by 45k • written 4.6 years ago by ★ 1.1k
2
votes
1
reply
1.2k
views
Why the result of GSEA and ssGSEA is different?
ssgsea gsea
updated 2.2 years ago by • 0 • written 4.6 years ago by ▴ 260
0
votes
0
replies
400
views
Total transcriptomics study of brain samples
Brain Tissue Nova Seq Total RNA seq
4.6 years ago by rashmi.kaul17 • 0
2
votes
7
replies
2.4k
views
NCBI eutils EFETCH only fetch elements needed (or remove abstract from response)?
efetch eutils API pubmed ncbi
4.6 years ago by chaitanya.bangera ▴ 10
0
votes
0
replies
763
views
Bootstrap support for the invalid node
bootstrap phylogeny
4.6 years ago by hlebnikovdaniil • 0
4
votes
6
replies
9.3k
views
how to remove duplicates with picard
alignment deduplication
updated 4.6 years ago by 166k • written 4.6 years ago by ▴ 70
0
votes
5
replies
1.8k
views
High CPU of GATK and Picard programs
GATK java cpu RAM
updated 4.6 years ago by 20 • written 4.7 years ago by ▴ 290
0
votes
0
replies
712
views
How can I extract information from tRNA encoding genes only (Python)?
Python gc3 script
4.6 years ago by amirah.rafique • 0
1
vote
4
replies
1.6k
views
How to optimized the alignment with bwa mem
genome bwa alignment
4.6 years ago by quentin54520 ▴ 120
1
vote
3
replies
3.1k
views
setting the missing genotypes as 0/0
vcf bcftools
updated 2.3 years ago by 45k • written 4.6 years ago by ▴ 30
0
votes
1
reply
713
views
Incomplete MGI to ensembl conversion using Bioc version 3.12
bioMart Ensembl gene conversion R
4.6 years ago by Adriano.Biasini • 0
0
votes
0
replies
895
views
How to formally test the replicate consistency having genotype data?
SNP genetic variance replicates vcf consistency
4.6 years ago by rimgubaev ▴ 340
0
votes
3
replies
2.4k
views
High log2foldchange in Deseq2
RNA-Seq gene deseq2
updated 4.6 years ago by 89k • written 4.6 years ago by • 0
4
votes
6
replies
3.1k
views
How to move multiple files to multiple folders in linux/mac?
SNP genome next-gen Assembly sequence
updated 4.6 years ago by 23k • written 4.6 years ago by ▴ 270
0
votes
0
replies
749
views
Stop codon position
Transcript stop codon
4.6 years ago by heureuse ▴ 10
0
votes
0
replies
980
views
Getting a list of variants (SNPs/mutations) using the Ensembl IDs (ENST) or NCBI IDs (NM) using Python 3. Or another way to get it using Python 3.
SNP
4.6 years ago by captainlabman ▴ 20
0
votes
3
replies
3.4k
views
how to build matrices for DeSeq 2 from salmon quan.sf files
assembly
updated 4.6 years ago by 89k • written 4.6 years ago by ▴ 20
0
votes
3
replies
1.1k
views
When I used R's circle package to draw SNP density map, I made an error
R
4.6 years ago by 445014525 • 0
1
vote
0
replies
751
views
What are the differences between polygenic risk scores and haplotype?
SNP gene
updated 4.6 years ago by 20 • written 4.7 years ago by ▴ 10
0
votes
0
replies
777
views
gene ensemble ID- no symbol
gene
4.6 years ago by Rob ▴ 180
6
votes
6
replies
8.5k
views
What batch correction was applied to pan-Cancer mRNA expression data?
TCGA pan-Cancer Atlas mRNA normalisation
updated 4.6 years ago by • 0 • written 6.7 years ago by ▴ 150
0
votes
4
replies
2.8k
views
PanCancerAtlas RNA-SeqV2 (RSEM) file contains negative values
RNA-Seq
updated 4.6 years ago by • 0 • written 5.4 years ago by • 0
0
votes
0
replies
642
views
Error in "GOplot" demo operation to make the GOCluster image
R RNA-Seq software error
4.6 years ago by linchen • 0
0
votes
1
reply
986
views
Alignment Error in BWA: The sequence "lcl|" was not found
bwa DNA-Seq alignment
4.6 years ago by gt ▴ 30
1
vote
1
reply
1.8k
views
bgen files split by chromosome
plink bgen qc snp genome
updated 4.6 years ago by 20 • written 4.6 years ago by ▴ 10
0
votes
5
replies
2.2k
views
How to insert sequence fasta data into a mysql database?
mysql biopython pymysql python3
4.6 years ago by USER • 0
0
votes
1
reply
769
views
Relative frequency with python
gene sequence R genome software error
4.6 years ago by USER • 0
0
votes
2
replies
1.1k
views
trimAl error I can't generate statistics
sequence software error gene R
4.6 years ago by USER • 0
1
vote
3
replies
1.1k
views
Remove specific sequence group in fasta file
sequence genome R gene software error
4.6 years ago by USER • 0
121,919 results • Page 707 of 2439
Recent Votes
A: Binning Over Genes And Calculating The Coverage [Bedops/Bedmap]
Answer: [vg giraffe] Unable to add read group to BAM file
Comment: [vg giraffe] Unable to add read group to BAM file
Answer: [vg giraffe] Unable to add read group to BAM file
Answer: vcf multisample
Answer: vcf multisample
Answer: vcf multisample
Recent Locations • All
Morocco, 8 minutes ago
United States, 9 minutes ago
United States, 10 minutes ago
Australia, 15 minutes ago
Stony Brook University, NY, 17 minutes ago
United States, 32 minutes ago
United States, 35 minutes ago
Recent Awards • All
Popular Question to Denis ▴ 320
Teacher to Pierre Lindenbaum 166k
Scholar to saruman ▴ 10
Popular Question to Luca Arbore ▴ 10
Popular Question to David Langenberger 11k
Popular Question to akshay ▴ 10
Scholar to colindaven 7.9k
Recent Replies
Comment: Help with species tree with orthofinder, iqtree and branch labeling by GenoMax 153k
> I don’t have clear species labels in my headers, only sequence IDs. I have not used iqtree, so this is only a thought ... should it be y…
Comment: Help with species tree with orthofinder, iqtree and branch labeling by san96 ▴ 190
Thank you so much.
Comment: [vg giraffe] Unable to add read group to BAM file by saruman ▴ 10
Yes, it seems so. Thank you.
Comment: cellranger mkref fail/error by GenoMax 153k
> The thing is that I do not have a genome for these organisms. That is not what `cellranger mkref` is expecting. You could consider alt…
Comment: cellranger mkref fail/error by tatsispolychronis • 0
The thing is that I do not have a genome for these organisms. i made a transcriptome using TRinity and this is what I am feeding it. I do n…
Comment: Genome Assembly QC from BAM files by SomeOne ▴ 240
Hi, I am not sure if i can call them good assemblies. Although based on QUAST and BUSCO stats, everything looks too good but somehow i hav…
Comment: cellranger mkref fail/error by GenoMax 153k
You need to provide the genome reference for the `--fasta` option as noted in https://www.10xgenomics.com/support/software/cell-ranger/late…
Answer: Methods to analyse structural similarity: co-evolution vs convergence by Joe 22k
Without historical data (ancient DNA) there's no way to ever really know this for certain. The best we can do is make inferences based on t…
Answer: vcf multisample by Pierre Lindenbaum 166k
eg : https://ega-archive.org/datasets/EGAD50000001683 > Merged VCF file from sporadic Meniere disease cohort (found using https://dat…
Comment: Genome Assembly QC from BAM files by GenoMax 153k
Since this saga has been on going for a long time, it will be helpful to add a comment as to how you finally got to this point of what seem…
Comment: Methods to analyse structural similarity: co-evolution vs convergence by dthorbur ★ 3.1k
A few comments. 1. Coevolution of a trait between 2 organisms can end up with a convergent structure with another organism. It's not e…
Comment: Genome Assembly QC from BAM files by SomeOne ▴ 240
Thank you. Based on the description these two look really what i wanted to see.
Comment: miRNA low mapping ratings by i.sudbery 22k
Also, can you just clarify that the output above is from cutadapt or form miRDeep2?
Comment: miRNA low mapping ratings by i.sudbery 22k
What happens if you remove the `--minimum-length` requirement to cutadapt, and then run fastqc on the result - what size disitribution do y…
Answer: Genome Assembly QC from BAM files by colindaven 7.9k
You can have a look at the tools in the PAQman pipeline https://github.com/SAMtoBAM/PAQman, and maybe also Inspector https://github.com/Mag…
Traffic: 3285 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6