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News:
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Comment: Orthofinder Not Mapping to Any Orthogroups
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I checked the file and it's definitely proteins. I had previously run BUSCO on protein mode on the same file and got >90% completeness. I r…
Comment: Orthofinder Not Mapping to Any Orthogroups
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I ran BUSCO on the predicted proteome in protein mode and got >91% completeness. I also removed multiple isoforms from the same gene.
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Hey, thanks for the reply! I think I didn't make the question very understandable. I do know how to code for this, the wall I have hit is *…
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Not enough detail to make a definitive recommendation. Since this should not happen, an educated guess is that you are doing something wron…
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A reason may be that your gene prediction is off. Did you run BUSCO on your predicted proteome? If the gene prediction is ok, then you shou…
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> Can you comment on these, If they look good ?
More importantly how do these assemblies compare (contiguous/number of chromosomes/size) t…
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Hi,
I have the same error with you, have you sorted it out yet? If you have, could you please share some?
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hello @colindaven
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You are right. I initially decided to keep Cutadapt because I feel more confident using it for primer removal, and it is the tool most comm…
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I'm not quite sure what you are asking. Stochastic reaction networks like this can be coded using the Gillespie algorithm.
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No, these are from the total reads, but when considering only the reads with adapter, I checked MultiQC again and it’s around 10–20% when a…
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> the total number of reads is very low (around 1–10% of the total reads)
Are these the reads that actually have the QIAseq 3'-miRNA adapt…
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As GenoMax said, the most likely thing to me here is that there is nothing cloned into the library. I can't think of any bioinformatic reas…
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