Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Post does not exist.
Limit : all time
all time
today
this week
this month
this year
121,521 results • Page
1 of 2431
Sort: Rank
Rank
Views
Votes
Replies
0
votes
1
reply
17
views
how shoud the phred score be intepreted?
sequencing
updated just now by
GenoMax
152k • written 18 minutes ago by
QX
▴ 70
2
votes
1
reply
40
views
Joint Calling for Large Germline WGS Cohort
NGS
RAM
cohort
Genomics
WGS
updated 2 hours ago by
Pierre Lindenbaum
166k • written 2 hours ago by
j.k3096
▴ 10
0
votes
2
replies
190
views
Inherited pipeline uses RNA-seq variant calls for WASP filtering—shouldn’t it be external SNPs?
WASP
2 hours ago by
jonas.andersson
▴ 40
0
votes
0
replies
25
views
Identifying RBP motifs overlapping exons
motifs
bedtools
RBP
2 hours ago by
RK
• 0
843
votes
170
replies
181k
views
112 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 10 weeks ago by
Biostar
3.6k • written 8.6 years ago by
Istvan Albert
102k
0
votes
0
replies
33
views
WGCNA analysis for Proteomics data
Proteomics
WGCNA
3 hours ago by
Sumit Paliwal
▴ 40
0
votes
0
replies
36
views
quality control for 16s metagenome reads
quality
metagneome
control
16s
fastp
3 hours ago by
m90
▴ 30
3
votes
8
replies
6.5k
views
7 follow
Cellranger count pipestance failed: The read lengths are incompatible with all the chemistries
10x
cellranger
single-cell
updated 4 hours ago by
zhang
• 0 • written 3.0 years ago by
firestar
★ 1.7k
0
votes
1
reply
488
views
News:
Hands-On Workshop - Next-Generation Sequencing Data Analysis: A Practical Introduction (September 10-12, 2025 in Berlin, Germany)
Workshop
RNA-Seq
Illumina
VariantCalling
DNA-Seq
5 hours ago by
ecSeq Bioinformatics
▴ 20
0
votes
0
replies
53
views
How to merge multiple pangenome graph files (generated by MC and PGGB)?
vg
pangenome
Minigraph-Cactus
PGGB
3 hours ago by
Yao
▴ 30
1
vote
0
replies
125
views
Can iHS and XP-EHH be applied to targeted sequencing data?
sequencing
targeted
ngs
ihs
1 day ago by
slzr_
▴ 10
1
vote
0
replies
129
views
Identify SNP, Indel variants from a List of FASTA sequence
SNP
2 days ago by
Trinh
▴ 10
0
votes
1
reply
199
views
PacBio amplicon reads partially aligned using minimap2 – library or analysis issue?
PacBio
minimap2
alignment
variants
pbmm2
updated 1 day ago by
GenoMax
152k • written 2 days ago by
louisflower1999
• 0
0
votes
0
replies
334
views
Job:
Biomedical Data Scientist / Systems Biologist / Omics Data Analyst / Bioinformatician / Computational Biologist (Tulane University, New Orleans, LA)
TUPulm
2 days ago by
yzhou40
• 0
0
votes
0
replies
143
views
Batch effect in codominant microsatellite data – how to correct
population-genetics
batch-effect
R
microsatellite
genotyping
2 days ago by
shervin
• 0
2
votes
3
replies
308
views
UCSC genome browser negative strand positions
Genomic
Data
Browser
UCSC
Visualization
Genome
updated 2 days ago by
Maximilian Haeussler
★ 1.8k • written 3 days ago by
ijarne
▴ 20
0
votes
1
reply
196
views
Error when computing bedtools bamtobed -bedpe
human
bedtools
libraries
illumina
bamtobed
updated 2 days ago by
ATpoint
88k • written 3 days ago by
María José
▴ 10
0
votes
9
replies
663
views
Ligand-Receptor analysis using LIANA - question about specificity
scRNA-seq
communication
cell-cell
updated 3 days ago by
Muhammad
▴ 10 • written 6 days ago by
abedkurdi10
▴ 190
2
votes
4
replies
1.1k
views
PRS calculation from two sample genotype results
prs
calculation
updated 3 days ago by
Muhammad
▴ 10 • written 6 months ago by
Arun
• 0
1
vote
16
replies
5.9k
views
PRS in UK Biobank - no covariate file and no phenotype file
UK
Biobank
PRS
3.8 years ago by
Jalil Sharif
▴ 80
39
votes
14
replies
2.5k
views
13 follow
Forum:
How do you estimate time to complete a project or task?
career
ngs
updated 3 days ago by
Анна
• 0 • written 5 months ago by
sviatoslav.kendall
▴ 980
0
votes
0
replies
136
views
News:
Introduction to Deep Learning for Biologists - online course, 3–7 November
MachineLearning
Python
deepLearning
ConvolutionalNeuralNetwork
3 days ago by
Physalia-courses
★ 2.6k
1
vote
2
replies
776
views
Running trajectory and velocity analysis with multiple samples
seurat
velocity
loom
trajectory
written 15 months ago by
gogeni5529
▴ 70
2
votes
6
replies
466
views
Weird p-value distribution on edgeR results
edgeR
pvalue-distribution
gene-expression
updated 2 days ago by
Gordon Smyth
★ 8.2k • written 3 days ago by
Guillermo
▴ 10
0
votes
1
reply
196
views
NMR modelling using xplor-NIH
peptide
xplor-NIH
NMR
2 days ago by
npk107
• 0
1
vote
3
replies
267
views
PCA interpretation
chip
seq
PCA
updated 3 days ago by
rfran010
★ 1.6k • written 3 days ago by
Irving
• 0
0
votes
0
replies
165
views
News:
course: Reproducibility in Bioinformatics - Only 2 seats remain!
Singularity
Git
Reproducibility
Docker
Snakemake
4 days ago by
Physalia-courses
★ 2.6k
0
votes
0
replies
163
views
Annotate phylogenetic trees with bars or strips
otu
phylogenetics
R
taxonomy
metabarcoding
4 days ago by
Luca Arbore
▴ 10
2
votes
2
replies
364
views
Identifying Long Reads Spanning Chromosomal Breakpoints
ONT
samtools
Whole-Genome
updated 4 days ago by
trausch
★ 2.0k • written 5 days ago by
Noah
▴ 10
0
votes
2
replies
287
views
PAML output
PAML
Codeml
Selection
updated 12 hours ago by
cfos4698
★ 1.1k • written 4 days ago by
Morjina
• 0
1
vote
0
replies
218
views
how to produce your own Nx plot
R
contiguity
plot
Nx
4 days ago by
Matteo Ungaro
▴ 130
1
vote
2
replies
326
views
Interpreting inconsistency between BLAST hits and phylogenetic clustering i
tree
phylogenetic
blast
3 days ago by
triplee0305
▴ 20
0
votes
0
replies
185
views
News:
Online course - Environmental Metagenomics - 13-17 October
Illumina
MAGs
Nanopore
Metagenomics
4 days ago by
Physalia-courses
★ 2.6k
0
votes
2
replies
311
views
Deg Difference in Deseq2
Deg
updated 4 days ago by
swbarnes2
15k • written 4 days ago by
j.k.owaresat
• 0
0
votes
0
replies
229
views
No gene_trans_map file in CD-HIT-EST output
cd-hit-est
Trinity
RNAseq
Trinotate
updated 4 days ago by
GenoMax
152k • written 4 days ago by
ofarinas621
• 0
0
votes
3
replies
368
views
MultiQC report - unique reads from sequence counts
fastQC
unique
reads
multiQC
4 days ago by
Rozita
▴ 40
2
votes
3
replies
347
views
NCBI Reference Genomes
genomes
ncbi
updated 5 days ago by
GenoMax
152k • written 5 days ago by
anna
▴ 70
0
votes
0
replies
211
views
GATK HaplotypeCaller missed variants in amplicon gene panel data
amplicon
gene_panel
haplotypecaller
variant_calling
gatk
5 days ago by
Sofya
• 0
0
votes
1
reply
476
views
Missing gem_classification.csv in Cell Ranger 9.0.0 Output Using cellranger multi with Combined Human-Mouse Reference
gem_classification
10x
cellranger_multi
combined_human-mouse_reference
updated 2 days ago by
GenoMax
152k • written 5 days ago by
tlallihuacan
• 0
0
votes
0
replies
199
views
Extracting logR and Baf files genome studio
Genomestudio
5 days ago by
1769mkc
★ 1.3k
0
votes
1
reply
371
views
Statistical analysis in a metagenomics study to validate biological differences
Metagenomics
analysis
updated 5 days ago by
chen
★ 2.5k • written 8 days ago by
Chijioke
• 0
1
vote
2
replies
568
views
Assembly issues
adapters
Assembly
Spades
updated 5 days ago by
chen
★ 2.5k • written 4 weeks ago by
anna
• 0
0
votes
5
replies
591
views
Trouble removing adapters from sequences using cutadapt
removal
cutadapt
adapter
primer
updated 5 days ago by
chen
★ 2.5k • written 10 days ago by
k.lagan
• 0
0
votes
5
replies
1.9k
views
Fastp
fastp
updated 5 days ago by
chen
★ 2.5k • written 3.2 years ago by
nishimalhotra2612
▴ 50
5
votes
10
replies
786
views
Need help using ExpansionHunter
ExpansionHunter
3 days ago by
brianhill_nc
• 0
0
votes
1
reply
272
views
How to extract gene list from GEO dataset in R
coding
beginner
question
r
updated 4 days ago by
manaswwm
▴ 570 • written 5 days ago by
decorus
• 0
0
votes
0
replies
240
views
WGBS Analysis with 1 control sample and 6 disease samples
one
WGBS
sample
5 days ago by
Cassandra
• 0
0
votes
0
replies
271
views
Comparing and plotting multinomial elastic net performance
ROC
elasticnet
plotting
glmnet
machinelearning
5 days ago by
bioinfo
• 0
2
votes
3
replies
430
views
How to add gene lable on GSEA plot
gseaplot
R
updated 4 days ago by
yura.grabovska
▴ 780 • written 5 days ago by
Emy Alade
▴ 20
0
votes
0
replies
274
views
Adding New Samples to Existing VCF Files graphtyper2
graphtyper2
existing_vcf
add_new_samples
6 days ago by
upadhyay.maulik
• 0
121,521 results • Page
1 of 2431
Recent Votes
Joint Calling for Large Germline WGS Cohort
Answer: Joint Calling for Large Germline WGS Cohort
Answer: PRS calculation from two sample genotype results
The Biostar Handbook. A bioinformatics e-book for beginners.
A: Best way to compare two samples in a VCF file
Identify SNP, Indel variants from a List of FASTA sequence
Can iHS and XP-EHH be applied to targeted sequencing data?
Recent Locations •
All
South Korea,
2 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087,
3 minutes ago
Russian Federation,
7 minutes ago
India,
7 minutes ago
United States,
9 minutes ago
United States,
11 minutes ago
France,
13 minutes ago
Recent Awards •
All
Popular Question
to
JAB
▴ 10
Popular Question
to
Pumla
• 0
Popular Question
to
analyst
▴ 70
Popular Question
to
Trinh
▴ 10
Popular Question
to
bharat26oct
• 0
Popular Question
to
dec986
▴ 380
Popular Question
to
Dr.
▴ 20
Recent Replies
Answer: how shoud the phred score be intepreted?
by
GenoMax
152k
> Does the phred-score is affected by the position of the base in all the reads (vertical), or all the bases that belong to a single read (…
Answer: Joint Calling for Large Germline WGS Cohort
by
Pierre Lindenbaum
166k
try glnexus https://github.com/dnanexus-rnd/GLnexus/wiki/Getting-Started
Comment: Inherited pipeline uses RNA-seq variant calls for WASP filtering—shouldn’t it be
by
jonas.andersson
▴ 40
Thank you so much for you answer @iansudbery! Yes I have read it too and I don't think it's totally clear either, so I guess I might not be…
Answer: Inherited pipeline uses RNA-seq variant calls for WASP filtering—shouldn’t it be
by
i.sudbery
21k
Looking through the WASP documentation, and paper, its a little unclear. Clearly what is expected is a set of "known" SNPs. However, I'm no…
Answer: Cellranger count pipestance failed: The read lengths are incompatible with all t
by
zhang
• 0
I think the first thing is to make sure the data really comes from a 10× Genomics platform. As far as I know, Seq-Well usually has shorter …
Answer: Hands-On Workshop - Next-Generation Sequencing Data Analysis: A Practical Introd
by
ecSeq Bioinformatics
▴ 20
The course fills up quickly. If you want to take part, [apply now][1]. [1]: https://www.ecseq.com/workshops/workshop_2025-07-NGS-N…
Comment: PAML output
by
cfos4698
★ 1.1k
Also you might want to consider this paper and tool: https://onlinelibrary.wiley.com/doi/abs/10.1002/ece3.5015
Comment: how to make go term plot and kegg pathway plot using InterProScan output
by
analyst
▴ 70
Anyone please add your valuable suggestion?
Comment: PacBio amplicon reads partially aligned using minimap2 – library or analysis iss
by
GenoMax
152k
Only including this as an alternate option to try (if your reads at HiFi) : https://github.com/PacificBiosciences/pbAA > but both the 5′ a…
Comment: NMR modelling using xplor-NIH
by
npk107
• 0
if anybody knows any good resources about how to explore nmr modelling using xplor-nih please let me know.
Comment: Missing gem_classification.csv in Cell Ranger 9.0.0 Output Using cellranger mult
by
GenoMax
152k
Reach out to 10x tech support since you have not received a response yet. They should provide an official answer, in case this output file …
Comment: Weird p-value distribution on edgeR results
by
Gordon Smyth
★ 8.2k
No outliers. Very clear hidden variable that hasn't been accounted for. voomLmFit will give same results here as edgeR.
Answer: UCSC genome browser negative strand positions
by
Maximilian Haeussler
★ 1.8k
I don't understand the question: this has nothing to do with the browser, right? You use a tool to transform coordinates and that tool give…
Answer: Error when computing bedtools bamtobed -bedpe
by
ATpoint
88k
Please read manuals of tools you use first. ```bash Tool: bedtools bamtobed (aka bamToBed) Version: v2.30.0 Summary: Converts BAM alig…
Answer: Ligand-Receptor analysis using LIANA - question about specificity
by
Muhammad
▴ 10
one potential reason for this could be the inherent sparsity of single-cell RNA-seq data. Single-cell RNA-seq often results in a relatively…
Traffic: 4292 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6