updated 28 minutes ago by
colindaven
6.4k
•
written 22 hours ago by
chaco001
▴
40
2
votes
2
replies
138
views
0
votes
2
replies
112
views
0
votes
1
reply
110
views
updated 13 hours ago by
Gordon Smyth
★
7.0k
•
written 1 day ago by
hagl
▴
10
0
votes
2
replies
140
views
795
votes
167
replies
142k
views
109 follow
updated 3 months ago by
Biostar
2.7k
•
written 7.4 years ago by
Istvan Albert
100k
1
vote
1
reply
107
views
updated 18 hours ago by
Gordon Smyth
★
7.0k
•
written 20 hours ago by
pairedttest
▴
10
2
votes
6
replies
1.9k
views
7 follow
0
votes
0
replies
199
views
4
votes
8
replies
464
views
4
votes
7
replies
525
views
7 follow
updated 11 hours ago by
dsull
★
5.8k
•
written 4 days ago by
qudrat.nii
▴
10
0
votes
0
replies
76
views
19
votes
11
replies
14k
views
10 follow
2
votes
2
replies
217
views
3
votes
0
replies
117
views
updated 20 hours ago by
Ram
43k
•
written 1 day ago by
Claire Watson
▴
60
0
votes
2
replies
186
views
updated 19 hours ago by
Ram
43k
•
written 1 day ago by
The_PyPanda
▴
10
0
votes
0
replies
118
views
3
votes
3
replies
190
views
1
vote
0
replies
85
views
0
votes
0
replies
92
views
0
votes
0
replies
90
views
1
vote
3
replies
153
views
0
votes
0
replies
81
views
3
votes
3
replies
212
views
0
votes
0
replies
95
views
0
votes
0
replies
109
views
0
votes
1
reply
145
views
updated 1 day ago by
ATpoint
82k
•
written 1 day ago by
AaronJaime
•
0
0
votes
2
replies
204
views
0
votes
2
replies
232
views
updated 1 day ago by
Ram
43k
•
written 2 days ago by
Assa Yeroslaviz
★
1.8k
1
vote
1
reply
172
views
1
vote
6
replies
320
views
5 hours ago by
starswillfade
▴
10
0
votes
0
replies
109
views
0
votes
0
replies
103
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
98
views
1
vote
0
replies
120
views
0
votes
0
replies
103
views
2 days ago by
synat.keam
▴
100
0
votes
0
replies
132
views
0
votes
1
reply
432
views
updated 2 days ago by
ginellegrenier
•
0
•
written 4 months ago by
Clayton
•
0
3
votes
4
replies
266
views
1 day ago by
QX
•
0
2
votes
1
reply
188
views
updated 2 days ago by
Adrian Altenhoff
★
1.1k
•
written 2 days ago by
hemantcnaik
•
0
0
votes
0
replies
113
views
2
votes
4
replies
278
views
updated 1 day ago by
Ram
43k
•
written 2 days ago by
ashaneev07
▴
20
2
votes
3
replies
230
views
updated 2 days ago by
Pierre Lindenbaum
161k
•
written 2 days ago by
analyst
▴
30
0
votes
1
reply
167
views
updated 2 days ago by
b.contreras.moreira
▴
170
•
written 2 days ago by
Broccoli
•
0
0
votes
3
replies
245
views
0
votes
1
reply
199
views
2
votes
4
replies
2.4k
views
updated 2 days ago by
ZhangYuanfeng
•
0
•
written 2.4 years ago by
Frazier Baker
•
0
1
vote
2
replies
256
views
3
votes
4
replies
344
views
updated 3 hours ago by
BioinfGuru
★
1.7k
•
written 2 days ago by
Ming Tommy Tang
★
3.9k
0
votes
4
replies
2.7k
views
updated 2 days ago by
evawillms183
•
0
•
written 8.3 years ago by
andrepleao
•
0
0
votes
0
replies
137
views
Recent Votes
Recent Locations •
All
Germany, 1 minute ago
United States, 2 minutes ago
Belgium, Brussels, 2 minutes ago
Russia, 7 minutes ago
Whitefish, MT, 7 minutes ago
Italy, 13 minutes ago
Bologna, 19 minutes ago
Recent Awards •
All
Popular Question to
rohitsatyam102
▴
850
Popular Question to
candron
▴
10
Scholar to
Alex Reynolds
35k
Popular Question to
chaco001
▴
40
Commentator to
GenoMax
141k
Popular Question to
rheab1230
▴
140
Popular Question to
BioinfGuru
★
1.7k
Recent Replies
Comment: gvcf joint calling
by
Jeremy Leipzig
22k
can you show us an exonic position in your VCF file that is all `./.`?
Comment: Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC:
by
O.rka
▴
710
Thank you. This answers my question. The reason I am asking is because I’m trying to do set enrichment analysis with BRENDA pathways using…
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
by
colindaven
6.4k
I used to use nextflow in a conda env. That requires the env to be active when a pipeline is started. Also I have productive pipelines whic…
Comment: different FeatureCounts output for the same data
by
Istvan Albert
100k
just to clarify, it is not that the program algorithm works differently but the meaning of the flags changed;
before -p was sufficient to…
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
BioinfGuru
★
1.7k
Thanks Ram. Using merge maxed out my ram on a large list, but your suggestion directed me to purrr::reduce which works great.
Comment: ScRNA data question
by
starswillfade
▴
10
features <- SelectIntegrationFeatures(object.list = merged_dat)
data.anchors <- FindIntegrationAnchors(object.list = merged_dat,
…
Comment: gvcf joint calling
by
zihanss
•
0
Thank you for your help! I really appreciate it!
And you know, the merged WES gVCF files still have "NA" loci. For such cases, I am quite …
Comment: Correct way to compare multiple treaments between RNA-Seq samples using edgeR?
by
Guille
•
0
Thank you for your answer!
The MDS plot seems to group most treatment groups close-by, so I'm starting to suspect the effect of treatment …
Answer: Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC:
by
Mensur Dlakic
★
27k
They say that we remember better things we figured out on our own, rather than things we were taught. You were literally two clicks away fr…
Comment: Heatmap and rna-seq
by
dsull
★
5.8k
https://maayanlab.cloud/clustergrammer/
It's a web-based tool (can also be a python jupyter widget) that I find useful for exploring a pat…
Answer: Limma Analysis Agilent Microarray Data (GPL1708)
by
Gordon Smyth
★
7.0k
There is an Agilent array case study in the limma User's Guide, which you might find helpful and somewhat simpler.
I don't recommend col…
Answer: Correct way to compare multiple treaments between RNA-Seq samples using edgeR?
by
Gordon Smyth
★
7.0k
The comparison you've done seems exactly right to test whether treatment 2 modifies or enhances the effect of treatment 1.
Have you exam…
Answer: How to use limma to find differentially expressed genes in response to a continu
by
Gordon Smyth
★
7.0k
There's no need for form a contrast because the score variable is already in the model. A continuous variable is its own contrast. Just run…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
▴
10
Oh wow, bedops closest-features, how did I overlook that!! I didn't know about it; thank you! Your awk script is beautiful. This worked per…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
▴
10
Thank you Pierre! I'll try this out with my full data set.
Traffic: 1723 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6