1
vote
5
replies
414
views
0
votes
0
replies
32
views
0
votes
1
reply
95
views
updated 1 hour ago by
ATpoint
82k
•
written 5 hours ago by
t.fortunato.asquini
•
0
0
votes
1
reply
149
views
updated 6 hours ago by
pjb39
▴
200
•
written 2 days ago by
beantkapoor16
•
0
795
votes
167
replies
143k
views
109 follow
updated 3 months ago by
Biostar
2.7k
•
written 7.4 years ago by
Istvan Albert
100k
0
votes
2
replies
115
views
updated 7 hours ago by
Mathew
▴
100
•
written 8 hours ago by
ramendra.sarma
•
0
0
votes
0
replies
44
views
2
votes
8
replies
204
views
updated 7 hours ago by
Pierre Lindenbaum
161k
•
written 11 hours ago by
Matteo Ungaro
▴
100
0
votes
0
replies
64
views
14 hours ago by
carlopecoraro2
★
2.5k
0
votes
1
reply
167
views
updated 16 hours ago by
Mathew
▴
100
•
written 2 days ago by
Lambodarswain316
•
0
0
votes
1
reply
172
views
updated 23 hours ago by
Mathew
▴
100
•
written 1 day ago by
Christopher
•
0
6
votes
7
replies
255
views
2 hours ago by
sansan_96
▴
90
2
votes
2
replies
156
views
2
votes
1
reply
164
views
updated 1 day ago by
Pierre Lindenbaum
161k
•
written 1 day ago by
melissachua90
▴
70
9
votes
7
replies
7.1k
views
updated 1 day ago by
Ruqaiya
•
0
•
written 5.7 years ago by
xiaozhongzhiping
▴
20
0
votes
2
replies
219
views
6
votes
4
replies
13k
views
0
votes
0
replies
93
views
1 day ago by
analyst
▴
50
0
votes
1
reply
132
views
updated 1 day ago by
Pierre Lindenbaum
161k
•
written 1 day ago by
analyst
▴
50
0
votes
6
replies
299
views
updated 4 hours ago by
Pierre Lindenbaum
161k
•
written 1 day ago by
ajbarrett98
•
0
0
votes
11
replies
397
views
2 hours ago by
Tuck898
•
0
1
vote
3
replies
194
views
3
votes
3
replies
206
views
1
vote
2
replies
203
views
0
votes
1
reply
152
views
0
votes
0
replies
120
views
updated 2 days ago by
Ram
43k
•
written 2 days ago by
naomiboldon
•
0
1
vote
3
replies
224
views
updated 2 days ago by
Ram
43k
•
written 2 days ago by
Omics data mining
▴
260
9
votes
6
replies
12k
views
updated 8.8 years ago by
Ashutosh Pandey
12k
•
written 8.8 years ago by
biolab
★
1.4k
1
vote
7
replies
535
views
updated 2 days ago by
Pierre Lindenbaum
161k
•
written 5 days ago by
schmince
•
0
0
votes
5
replies
254
views
2 days ago by
SilhouetteQ
•
0
0
votes
1
reply
143
views
updated 2 days ago by
GenoMax
142k
•
written 2 days ago by
maria.soler
•
0
0
votes
2
replies
230
views
1 day ago by
carolofharvest
▴
40
0
votes
1
reply
182
views
2
votes
12
replies
2.7k
views
6 follow
updated 4 days ago by
Anitha
•
0
•
written 4.8 years ago by
ww22runner
▴
60
0
votes
0
replies
124
views
0
votes
1
reply
158
views
0
votes
1
reply
171
views
0
votes
0
replies
116
views
0
votes
1
reply
180
views
0
votes
2
replies
190
views
0
votes
0
replies
123
views
2 days ago by
jain72744
▴
10
6
votes
2
replies
194
views
updated 2 days ago by
Gordon Smyth
★
7.1k
•
written 2 days ago by
gBioStar5
▴
10
2
votes
5
replies
352
views
3
votes
1
reply
169
views
0
votes
0
replies
131
views
0
votes
0
replies
144
views
0
votes
0
replies
137
views
3 days ago by
RT
▴
10
0
votes
0
replies
139
views
2
votes
0
replies
139
views
3 days ago by
carlopecoraro2
★
2.5k
0
votes
8
replies
398
views
3 days ago by
marco.barr
▴
100
Recent Votes
Recent Locations •
All
Brazil, 1 minute ago
India, 12 minutes ago
UCLA, 13 minutes ago
Italy, 17 minutes ago
Turkey, 24 minutes ago
Canada, 24 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 26 minutes ago
Recent Awards •
All
Popular Question to
rj.rezwan
•
0
Scholar to
colindaven
6.4k
Popular Question to
Jen
▴
70
Scholar to
Pierre Lindenbaum
161k
Popular Question to
Michael
54k
Popular Question to
Kai_Qi
▴
130
Recent Replies
Comment: How to remove multiple batch effects from RNA-seq data before limma differential
by
ATpoint
82k
Include confounders into the limma design. No need for upfront removal. Note that libsize is taken care of by normalizing usually. Are you …
Comment: Longest transcript variant per gene
by
sansan_96
▴
90
Thank you very much, success in your projects.
Comment: In IGV is this a heterogeneous mutation or false call?
by
Tuck898
•
0
Thanks for the input :)
Comment: install package: package ‘gmwm’ is not available for this version of R
by
Pine
▴
20
This seems to indicate that the R verison you are using (or packages it depends on) are not compatible with the R version you are using any…
Answer: Tissue-specific DEG analysis with DEseq2
by
arctic
▴
40
Not my area of expertise but GTEx portal seems to offer visual comparison of expression across tissues, maybe checking their pipeline could…
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
Pierre Lindenbaum
161k
> I think I am mostly struggling with what would need to be coded to my dataset here and how to run this loop on my set in general.
i do…
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
ajbarrett98
•
0
Pierre,
I am a novice at all of this in general and I have never used Java-based programming before. I may not be able to properly wrangl…
Answer: Practical Haplotype Graph v2 not finding correct paths
by
pjb39
▴
200
There have been a couple of bugs found that affect imputation accuracy, one in build-kmer-index and one in find-paths. The find-paths bug o…
Comment: Output file of satools flagstat empty
by
Mathew
▴
100
Hi,
In your samtools flagstat, -o specifies the output format. This can be set to 'default', 'json', or 'tsv'. If -o is not specified , t…
Comment: Tissue-specific DEG analysis with DEseq2
by
BioinfGuru
★
1.7k
I wrote an R package (see [rrdr.io][1], and [github][2]) some years ago to calculate tissue specificity from bulk RNAseq based on [this pap…
Comment: joint callset and vcf sorting, unknown TAG issue
by
Pierre Lindenbaum
161k
> set the Number= to 0 instead of 1;
I'm not sure it's a problem.
> probably I should also change the Type to Flag
ah yes, my bad ! (f…
Comment: Output file of satools flagstat empty
by
GenoMax
142k
If you posted the entire command line then you did not include `-O $MAPPING/${i}.mapping_stats.txt` in that.
Comment: joint callset and vcf sorting, unknown TAG issue
by
Matteo Ungaro
▴
100
@Pierre Lindenbaum I see. I looked up and, although present, the TAG goes like this in both files:
`##INFO=<ID=1000gALT,Number=0,Type=Flag,…
Comment: joint callset and vcf sorting, unknown TAG issue
by
Matteo Ungaro
▴
100
@Pierre Lindenbaum much appreciated, thanks for the explanation and possible approaches to solve this.
I'm not in the position to run `U…
Comment: Tophat multiple or unique mapping criteria
by
Ruqaiya
•
0
> The --b2-mp defines the mismatch penalty: the first number is used when the quality of the base is good, the second when it's bad. If you…
Traffic: 1288 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6