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Answer: input file in rmats
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Mathew
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Hi,
In the example they give in their GitHub (https://github.com/Xinglab/rmats-turbo/blob/v4.3.0/README.md):
They have 2 sample groups wi…
Comment: Longest transcript variant per gene
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Mathew
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I'm glad it worked well for you! Good luck with the rest of your project. I wish you the best.
Comment: Longest transcript variant per gene
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sansan_96
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Hello again,
It works very well, thank you very much for this solution.
Comment: Longest transcript variant per gene
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sansan_96
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Hello Mathew,
Thanks for your answer, I'll try it and come back.
Answer: Longest transcript variant per gene
by
Mathew
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Hi, why not write code to extract the longest variant?
I copied these two in a txt file called "input.txt", and made three dummy variants …
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https://www.biostars.org/p/107759/<br>
https://www.biostars.org/p/403649/
<!-- this is it -->
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Sorry, what analysis are you trying to perform with these databases?
Based on your question, it appears you are using Kraken2 and Bracken.…
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I looked up a publication using CIBERSORT to see how they got the package, and indeed they acquired it through official website application…
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If you are using R, you should check the liana R implementation (https://github.com/saezlab/liana).
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Thank you Pierre, I am going to take some time to get my head around this and report back if it works.
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Thanks for the crosspost! Just trying to get things figured out.
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To the best of my knowledge, CIBERSORT is and has always and only been available via the official website application from Stanford. Whatev…
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Update of BioLabDonkey - Version 5.6
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cross posted: https://stackoverflow.com/questions/78462732/
> Please mind that posting the same question to multiple sites can be perceive…
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