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424 results • Page 4 of 9
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4
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7
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1.5k
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Forum: Bioinformatics and/or computational biology congress 2019?
congress biology sequencing
updated 11 months ago by 43k • written 5.7 years ago by ★ 2.4k
5
votes
7
replies
1.8k
views
Forum: Research Bazaar 2018
course workshop
updated 11 months ago by 43k • written 6.4 years ago by 8.4k
3
votes
7
replies
2.9k
views
Forum: Strategies for group submisions to SRA (BioProject)
NCBI SRA next-gen Archive Core-Facility
updated 11 months ago by 43k • written 5.6 years ago by ★ 2.7k
7
votes
6
replies
1.8k
views
Forum: Bioinformaticians - Am I on the Right Track?
Career
updated 11 months ago by 43k • written 4.4 years ago by ▴ 80
8
votes
6
replies
4.8k
views
6 follow
Forum: Are OTUs an accurate measure of abundance?
next-gen 16S-rRNA
updated 11 months ago by 43k • written 6.3 years ago by ▴ 30
10
votes
6
replies
2.2k
views
Forum: How to acknowledge in the paper a reference genome that hasn't been published yet?
reference paper
updated 11 months ago by 43k • written 5.7 years ago by ▴ 140
2
votes
6
replies
3.1k
views
Forum: RIP CentOS, CentOS 8 to be EOL'd in 2021
centos linux-distro os
updated 11 months ago by 43k • written 3.4 years ago by 11k
6
votes
6
replies
2.5k
views
Forum: Trouble finding job with MS in Bioinformatics
next-gen
updated 11 months ago by 43k • written 5.9 years ago by ▴ 10
2
votes
6
replies
1.2k
views
Forum: Would love to hear from you re: which bionformatics resources could use an improvement in their interface.
seq database gene prot
updated 11 months ago by 43k • written 4.1 years ago by • 0
1
vote
6
replies
2.2k
views
Forum: shotgun sequencing and clone-based sequencing
sanger-sequencing
updated 12 months ago by 43k • written 6.7 years ago by • 0
6
votes
6
replies
802
views
Forum: You have 3 days of zero obligations and expansive resources. What are you building?
hypothetical thought-experiment
9 weeks ago by jared.andrews07 ★ 16k
3
votes
6
replies
2.0k
views
Forum: Are you using GATK ?
GATK4 GATK
updated 12 months ago by 43k • written 6.5 years ago by ▴ 20
16
votes
6
replies
8.1k
views
7 follow
Forum: What computer skills should I put on my resume?
resume genome
updated 11 months ago by 43k • written 6.4 years ago by ▴ 30
4
votes
6
replies
958
views
6 follow
Forum: Bioinformatics: what do you think of it in the next 20 years?
future
updated 5 months ago by 43k • written 5 months ago by • 0
8
votes
6
replies
2.5k
views
Forum: How do you organize sequence data (FASTQs)?
RNA-Seq sequencing
updated 11 months ago by 43k • written 6.1 years ago by ▴ 280
4
votes
6
replies
2.9k
views
Forum: NGS Data Storage Best Practices (Clinical)
NGS clinical storage
updated 11 months ago by 43k • written 4.4 years ago by ▴ 630
14
votes
6
replies
2.5k
views
6 follow
Forum: Bioinformatics experience in programming
python R
updated 11 months ago by 43k • written 5.7 years ago by ▴ 20
7
votes
6
replies
3.1k
views
Forum: transition to bioinformatics
career wet-lab
updated 11 months ago by 43k • written 5.9 years ago by • 0
13
votes
6
replies
1.2k
views
Forum: To Cloud or Not to Cloud - Privacy implications of genetic data sharing
security diagnostics DNA-Seq
updated 11 months ago by 43k • written 4.8 years ago by 11k
5
votes
6
replies
1.1k
views
Forum: COVID19 testing - can we/should we use NGS?
NGS covid19 diagnostics
updated 11 months ago by 43k • written 4.1 years ago by ★ 1.4k
2
votes
6
replies
1.0k
views
Forum: Error in posting to Biostars?
meta
updated 11 months ago by 43k • written 4.3 years ago by ▴ 50
10
votes
6
replies
1.3k
views
6 follow
Forum: Pros and cons to do biomedical research in pharmaceutical company
industry career academia
updated 11 months ago by 43k • written 4.2 years ago by ★ 9.4k
23
votes
6
replies
13k
views
Forum: List Of File Formats Used In Bioinformatics?
bioinformatics
updated 10 months ago by 43k • written 11.6 years ago by ▴ 140
1
vote
6
replies
1.4k
views
Forum: Genetic variation data analysis frequently tricky problems and troubleshot
vcf SNP plink
updated 11 months ago by 43k • written 6.1 years ago by ★ 9.4k
0
votes
6
replies
2.1k
views
7 follow
Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers
software-error
updated 11 months ago by 43k • written 5.6 years ago by • 0
19
votes
6
replies
3.5k
views
Forum: ngs vs microarray
microarray ngs
updated 11 months ago by 43k • written 5.8 years ago by ▴ 20
9
votes
6
replies
1.9k
views
6 follow
Forum: GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl bug GTF
updated 8 months ago by 82k • written 18 months ago by ▴ 30
15
votes
6
replies
4.3k
views
Forum: Which database software is better for bioinformatics web development? MySQL or MongoDB?
database mysql mongodb software
updated 11 months ago by 43k • written 5.6 years ago by ▴ 10
11
votes
6
replies
1.6k
views
Forum: Posting a preprint paper on biostars.com
preprint
updated 11 months ago by 43k • written 5.5 years ago by ▴ 760
7
votes
6
replies
762
views
Forum: where to work as a bioinformatician (NGS/IA)
employment omics ia ngs
updated 3 months ago by 43k • written 4 months ago by ▴ 20
9
votes
6
replies
1.5k
views
Forum: How to start my career in Bioinformatics
career
updated 11 months ago by 43k • written 3.7 years ago by ▴ 10
3
votes
6
replies
1.5k
views
6 follow
Forum: Is Bioinformatics a Professional Degree?
career degree
8 months ago by anasjamshed ▴ 120
3
votes
6
replies
2.2k
views
Forum: Choosing the appropriate test for differential analysis: Limma or Mann-Whitney (with BH correction)? Test for normality
R Shapiro-Wilk Limma Mann-Whitney
updated 11 months ago by 43k • written 4.0 years ago by ▴ 40
3
votes
6
replies
1.1k
views
Forum: How to become a moderator and other ways of contributing to Biostars
meta biostars
updated 11 months ago by 43k • written 19 months ago by 6.2k
5
votes
6
replies
1.3k
views
Forum: The best way to share scientific findings with community
Scientific-findings
updated 12 months ago by 43k • written 6.6 years ago by ★ 4.3k
8
votes
6
replies
2.9k
views
Forum: Demonstrating Exponential Growth In Pre-School
education
written 10.2 years ago by 10k
7
votes
6
replies
2.8k
views
7 follow
Forum: Should I specialise in bioinformatics?
career
updated 11 months ago by 43k • written 5.6 years ago by ▴ 10
9
votes
6
replies
1.4k
views
Forum: New Aligner Tool - Would you be interested in this ?
ChIP-Seq alignment Assembly next-gen rna-seq
updated 11 months ago by 43k • written 6.1 years ago by ▴ 30
6
votes
6
replies
1.3k
views
Forum: How can I deal with this publication issue?
publication
updated 11 months ago by 43k • written 6.0 years ago by ▴ 10
6
votes
5
replies
959
views
Forum: Tips on: How to organise data on servers
genotype warehouse servers
updated 11 months ago by 43k • written 4.5 years ago by ▴ 110
1
vote
5
replies
1.5k
views
Forum: College Grad looking for research assistant position in computational biology/ bioinformatics
career
updated 11 months ago by 43k • written 6.2 years ago by • 0
6
votes
5
replies
2.3k
views
Forum: Maintaning internal or private installation of Biostar or a similar Q&A site
Biostars
6 months ago by tshtatland ▴ 190
3
votes
5
replies
1.5k
views
Forum: Cooperation for scientific project (python, deep learning, image recognition, histological images)
deep-learning python image-recognition
updated 11 months ago by 43k • written 5.5 years ago by ▴ 40
11
votes
5
replies
6.5k
views
Forum: Slurm, Son of Grid Engine, Mesos, and Hadoop YARN vs HTCondor and Torque
PBS HPC SDSC Torque
updated 11 months ago by 43k • written 5.8 years ago by ★ 9.4k
11
votes
5
replies
4.8k
views
Forum: Bioinformatics Workstation Suggestions
RNA-Seq next-gen workstation
updated 11 months ago by 43k • written 4.9 years ago by ▴ 110
5
votes
5
replies
938
views
Forum: What will happen to data analysts after COVID-19 pandemic
COVID
updated 11 months ago by 43k • written 4.1 years ago by ★ 4.3k
6
votes
5
replies
13k
views
Forum: Single-end sequencing versus paired-end
Assembly snp sequencing
updated 11 months ago by 43k • written 4.2 years ago by ▴ 20
5
votes
5
replies
2.4k
views
Forum: BCL files as deliverables from a sequencing center
core-facility service-provider
updated 11 months ago by 43k • written 5.0 years ago by 5.2k
4
votes
5
replies
1.4k
views
Forum: I'm looking for a mentor in Bioinformatics
mentor teaching
updated 3 months ago by • 0 • written 13 months ago by • 0
6
votes
5
replies
1.7k
views
Forum: Very generally speaking, what are valid criteria to decide that a sample is an outlier?
outliers
updated 11 months ago by 43k • written 3.4 years ago by ▴ 330
424 results • Page 4 of 9
Recent Votes
Bioinformatics: Where do I start
Ideal PC configurations and operating system for bioinformatics laboratory
A: VCF files: Change Chromosome Notation
VCF files: Change Chromosome Notation
VCF files: Change Chromosome Notation
Answer: error in fun(x((i)), ...) : only defined on a data frame with all numeric alike
Answer: Failed to open VCF file
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Comment: Adata.raw.X in LIANA, something wrong with conversion from Seurat to adata in py by fracarb8 ★ 1.6k
If you are using R, you should check the liana R implementation (https://github.com/saezlab/liana).
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File by ajbarrett98 • 0
Thank you Pierre, I am going to take some time to get my head around this and report back if it works.
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File by ajbarrett98 • 0
Thanks for the crosspost! Just trying to get things figured out.
Answer: error in fun(x((i)), ...) : only defined on a data frame with all numeric alike by ATpoint 82k
To the best of my knowledge, CIBERSORT is and has always and only been available via the official website application from Stanford. Whatev…
Comment: BioLabDonkey - new Mac program for molecular biologists by vytarasov ▴ 180
Update of BioLabDonkey - Version 5.6 - In silico PCR function is added.
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File by Pierre Lindenbaum 161k
cross posted: https://stackoverflow.com/questions/78462732/ > Please mind that posting the same question to multiple sites can be perceive…
Comment: java.nio.bufferunderflowexception haplotypecaller error for bqsr reads by Pierre Lindenbaum 161k
command is missing, version is missing.
Answer: Failed to open VCF file by Pierre Lindenbaum 161k
> Error: Failed to open vcf file Fixing: No such file or directory one of your file is missing, obviously. Check files exist using `[…
Comment: Align paired and unpaired reads simultaneously using Bowtie2? by Ruqaiya • 0
I have forward reads that didn't require any trimming except for adapter sequence. but the reverse read file required trimming so i trimmed…
Comment: Trimmomatic: What is the difference between paired and unpaired output files in by Ruqaiya • 0
can we not mention unpaired ? i have a reverse read file that needs a lot of trimming but forward file is usable. I don't understand how to…
Comment: Genome Assembly task + Protein Translation, assignment advice on a question by rackbersingh • 0
It is an indeed an old assignment question, I am doing revision and practicing answering questions for an upcoming test and just wanted to …
Comment: How are score_weights calculated in this code? by carolofharvest ▴ 40
I've found this code [in this site :][1] . It doesn't seem like they've shared any additional information about this in the previous line…
Comment: Correlation Analysis by Researcher ▴ 30
Thank you so much. I ran based on the above code and found that all gene columns have the same values, which you obtain as the average corr…
Answer: Is it Possible to "Merge" data from Replicates within a VCF SNP File by Pierre Lindenbaum 161k
use bcftools merge with --force-samples and then use jvarkit https://jvarkit.readthedocs.io/en/latest/VcfFilterJdk/ to replace the no-call …
Answer: In IGV is this a heterogeneous mutation or false call? by swbarnes2 14k
Since all the reads that show the alternate allele have to be clipped to align there, I'd say those reads are misaligned. I would say that…
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