170
votes
41
replies
91k
views
27 follow
162
votes
64
replies
80k
views
39 follow
36
votes
16
replies
28k
views
14 follow
23
votes
12
replies
1.9k
views
19
votes
14
replies
860
views
updated 5 days ago by
Jeremy Leipzig
21k
•
written 6 days ago by
vincenthus
▴
70
18
votes
22
replies
8.1k
views
10 follow
Tutorial:
Create de novo repeat library
16
votes
16
replies
1.8k
views
13
votes
10
replies
604
views
8 follow
11
votes
4
replies
907
views
10
votes
8
replies
563
views
9
votes
4
replies
1.1k
views
9
votes
4
replies
1.2k
views
9
votes
5
replies
7.0k
views
9
votes
12
replies
4.2k
views
updated 5 days ago by
Amirhossein Hajianpour
▴
40
•
written 7.7 years ago by
fi1d18
★
4.2k
8
votes
2
replies
2.9k
views
8
votes
4
replies
786
views
8
votes
5
replies
376
views
updated 6 days ago by
fishgolden
▴
510
•
written 14 days ago by
BioGrad321
•
0
8
votes
5
replies
1.6k
views
8
votes
10
replies
713
views
7
votes
7
replies
3.8k
views
updated 3 days ago by
abis.1819104
•
0
•
written 5.3 years ago by
hkarakurt
▴
170
7
votes
4
replies
1.9k
views
7
votes
3
replies
713
views
6
votes
7
replies
1.2k
views
6
votes
4
replies
1.2k
views
6
votes
1
reply
159
views
6
votes
8
replies
509
views
6
votes
4
replies
751
views
5
votes
4
replies
738
views
5
votes
4
replies
560
views
5
votes
4
replies
252
views
14 hours ago by
Mehwish
•
0
5
votes
6
replies
238
views
6 follow
updated 1 hour ago by
Alex Reynolds
35k
•
written 17 hours ago by
Chris
▴
180
5
votes
7
replies
470
views
updated 5 days ago by
Ram
40k
•
written 6 days ago by
Giuseppe Giovanni
▴
30
5
votes
7
replies
413
views
5
votes
2
replies
244
views
5
votes
8
replies
2.7k
views
4
votes
7
replies
724
views
4
votes
4
replies
2.9k
views
4
votes
3
replies
989
views
4
votes
8
replies
553
views
4
votes
0
replies
193
views
4
votes
4
replies
411
views
3
votes
4
replies
423
views
3
votes
2
replies
274
views
3
votes
2
replies
469
views
3
votes
3
replies
354
views
3
votes
10
replies
493
views
3
votes
2
replies
262
views
3
votes
4
replies
384
views
3
votes
1
reply
1.2k
views
3
votes
1
reply
189
views
Recent Votes
Recent Locations •
All
Tel Aviv, just now
Italy, just now
United Kingdom, 1 minute ago
United Kingdom, 2 minutes ago
France, 3 minutes ago
Netherlands, 3 minutes ago
Germany, 6 minutes ago
Recent Awards •
All
Popular Question to
taniamahmood38
▴
50
Popular Question to
mthm
▴
50
Popular Question to
gokberk
▴
90
Supporter to
edus_bioinfo
▴
40
Popular Question to
kenneditodd
▴
20
Recent Replies
Answer: Gene enrichment analysis of prokaryotes gene
by
dthorbur
▴
550
[Here](https://github.com/golden75/prokaryote_RNASeq) is a tutorial on how to use the R package DESeq2 for prokaryotic RNAseq analyses.
[H…
Comment: Read block operation failed with BAM file
by
John Marshall
3.0k
Indeed, though it is a seek issue when accessing files over HTTP and other network protocols. So, unless there's something you didn't menti…
Comment: geom_signif() uses t-test to compare between more than 3 groups... Isn't this wr
by
RM123
▴
10
Thank you for your help. I am comparing 4 groups, but as I have gene expression data I have a considerable number of boxplots to make. I fo…
Comment: gene correlations in between two groups
by
ATpoint
76k
And how should I know this? I cannot read minds, nor see your screen, data or anything. Please ask a good question with necessary details.
…
Comment: gene correlations in between two groups
by
edus_bioinfo
▴
40
Thanks. But they are already analyzed. Afaik it analyzes raw data. In my dataset for each gene there is score. I want to interpret the data…
Answer: GWAS phenotype
by
dthorbur
▴
550
Hello again.
Yes, you can conduct GWAS using binary trait data, but it comes with a whole suite of complications. See [this](https://ww…
Comment: geom_signif() uses t-test to compare between more than 3 groups... Isn't this wr
by
RM123
▴
10
Hello Dariober,
That seems like a good solution, however I'm pretty new to R. Could you tell me how I can do that?
Comment: how to create a loop in R
by
Nicolas Rosewick
10k
Not really a bioinformatics related question. Start by looking at R tutorial, there is plenty of them online e.g. : https://www.statmethods…
Comment: Violin plot (Monocle 3) - Troubleshooting
by
fracarb8
★
1.2k
You did not add the screenshot.
Answer: BED files
by
Alex Reynolds
35k
Generically via `bedmap`:
```
bedmap --echo --echo-map --count exome.bed annotations.bed > answer.bed
```
The `annotations.bed` fil…
Comment: geom_signif() uses t-test to compare between more than 3 groups... Isn't this wr
by
dariober
14k
It seems to me that anova followed by HSD is a more sensible approach than applying independent t-tests. Granted this is the first time I s…
Comment: BED files
by
barslmn
★
1.8k
I am guessing you want the annotation files. https://ftp.ncbi.nlm.nih.gov/refseq/H_sapiens/annotation/GRCh38_latest/refseq_identifiers/
Comment: Filter human transcription factors
by
Alex Reynolds
35k
Curious how redundant these TFs are. Jeff Vierstra has done some analysis on this to simplify model sets: https://www.vierstra.org/resource…
Comment: Read block operation failed with BAM file
by
Alex Reynolds
35k
https://github.com/samtools/htslib/pull/1676 patches a seek issue in `htslib` (upon which `samtools` and `pysam` depend)
Comment: Merging the filename with tsv files for master file
by
barslmn
★
1.8k
Could you add samples from your files and your expected output.
Traffic: 2101 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6