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403 results • Page
2 of 9
Sort: Votes
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Votes
Replies
6
votes
6
replies
2.5k
views
Sites for Computer Aided Drug Designing
CADD
Simulations
in-silico
Docking
written 8.3 years ago by
ruchikabhat31
▴ 60
6
votes
7
replies
1.1k
views
The size of the genome in pb of an organism before sequencing?
sequencing
genome
updated 5 days ago by
Ram
38k • written 4.4 years ago by
irg21
• 0
6
votes
3
replies
4.4k
views
Is There A Way To See An Alignment In A Text File?
alignment
updated 5 days ago by
Ram
38k • written 10.7 years ago by
diltsjeri
▴ 470
6
votes
6
replies
2.0k
views
Forum:
Turning off revolvermaps
meta
biostars
updated 2 days ago by
Ram
38k • written 7.4 years ago by
Eric Normandeau
11k
6
votes
7
replies
1.2k
views
Extract CDS from maker gff
CDS
maker2
annotation
gff
updated 4 days ago by
lieven.sterck
14k • written 21 months ago by
Sarah
▴ 60
6
votes
4
replies
198
views
Download NCBI compiled protein database for specific genus
protein
NCBI
updated 5 days ago by
GenoMax
127k • written 5 days ago by
saadleeshehreen
▴ 110
6
votes
3
replies
1.4k
views
Does each read in a BAM file have approximately the same size?
bam
updated 5 days ago by
Ram
38k • written 5.1 years ago by
Aleksandra
• 0
6
votes
5
replies
2.1k
views
Forum:
Bioinformatics course good for microbiology student or not?
career
updated 1 day ago by
Ram
38k • written 7.3 years ago by
cheeesu
▴ 10
6
votes
1
reply
1.6k
views
Why not Windows
linux
windows
updated 2 days ago by
Ram
38k • written 7.5 years ago by
Abdul Rafay Khan
★ 1.2k
6
votes
2
replies
9.7k
views
Tophat Junctions.Bed File
tophat
updated 5 days ago by
Ram
38k • written 10.9 years ago by
Varun Gupta
★ 1.2k
6
votes
9
replies
6.7k
views
8 follow
Any methods available to do QC analysis of Pacbio raw data??
Assembly
genome
Pacbio
next-gen
sequencing
updated 4 days ago by
Afif Elghraoui
• 0 • written 5.5 years ago by
karthic
▴ 120
5
votes
11
replies
469
views
Align miRNA library (small RNA-seq) without trimming
BOWTIE2
RNA-SEQ
BOWTIE
2 days ago by
Paola
▴ 10
5
votes
5
replies
2.4k
views
how to change the header of input file
fasta
awk
sed
updated 5 days ago by
Ram
38k • written 8.9 years ago by
Raghav
▴ 100
5
votes
4
replies
2.3k
views
strand specificity of TFBS
motif
transcription-factor
TFBS
updated 1 day ago by
Ram
38k • written 7.4 years ago by
Chris Gene
▴ 80
5
votes
7
replies
397
views
Most efficient way to run Diamond against a very very large database (i.e., NCBI's NR)?
protein
annotation
alignment
diamond
nr
4 days ago by
O.rka
▴ 650
5
votes
5
replies
459
views
GetBM - GERP conservation score for GRCm39
ensembl
biomaRt
updated 5 days ago by
GenoMax
127k • written 8 days ago by
Kyle
▴ 10
5
votes
3
replies
436
views
What's the correct way to map to hg38 with alternative contigs?
NGS
bwa
5 days ago by
Belanov
▴ 10
5
votes
2
replies
230
views
Somatic truth set
benchmarking
Somatic
updated 3 days ago by
lethalfang
▴ 100 • written 6 days ago by
samuel
▴ 220
5
votes
2
replies
942
views
Forum:
This website doesn't email me when one of my threads gets a response anymore
meta
biostars
updated 2 days ago by
Ram
38k • written 7.5 years ago by
devenvyas
▴ 720
5
votes
7
replies
1.9k
views
How to obtain the non-redundant total size of the GRCh38 genome?
exome
updated 5 days ago by
Ram
38k • written 6.3 years ago by
salvatore.digiorgio
▴ 10
5
votes
15
replies
3.2k
views
Blast+ Error Code=12
blast
updated 5 days ago by
Ram
38k • written 11.2 years ago by
Amr
▴ 160
5
votes
8
replies
1.5k
views
DiffBind missing peaks and FRiP
DiffBind
ChIP-seq
updated 1 day ago by
Rory Stark
★ 1.7k • written 13 months ago by
Christine
▴ 20
4
votes
1
reply
1.5k
views
Job:
Genomics Data Presentation group leader at Ensembl
ensembl
web
data-visualiation
outreach
updated 2 days ago by
Ram
38k • written 7.5 years ago by
Emily
23k
4
votes
6
replies
772
views
Basic help with RNA seq
RNA-seq
updated 3 days ago by
Ram
38k • written 18 months ago by
fionajcunningham
• 0
4
votes
8
replies
6.4k
views
SNPs located in promoter region. OR exon, intron, 5'UTR, 3'UTR
SNP
updated 1 day ago by
Ram
38k • written 7.3 years ago by
wanghaho9797
• 0
4
votes
3
replies
1.6k
views
Job:
Gene annotation project leader at Ensembl
ensembl
gene-annotation
Gencode
updated 2 days ago by
Ram
38k • written 7.5 years ago by
Emily
23k
4
votes
1
reply
2.9k
views
How Do I Get A Gff Files Or Make My Own For A Bacteriophage?
gtf
gff
updated 5 days ago by
Ram
38k • written 10.0 years ago by
joaslucas
▴ 90
4
votes
6
replies
3.7k
views
How To Remove Nonstandard Lines In Bed File
bed
updated 5 days ago by
Ram
38k • written 11.9 years ago by
Phuong
▴ 10
4
votes
4
replies
2.1k
views
What protein structure do human proteins refer to?
protein
protein-structure
updated 1 day ago by
Ram
38k • written 7.4 years ago by
jcrapser
▴ 10
4
votes
4
replies
203
views
Getting Intron Positions from Amino Acid Sequences
acid
positions
amino
sequences
intron
1 hour ago by
fafad046
• 0
4
votes
7
replies
281
views
What is the major problem with this pipeline of SNPs analysis?
Genomics
Fungi
SNP
VCF
updated 1 day ago by
Ram
38k • written 1 day ago by
kgwkk2
• 0
4
votes
2
replies
2.8k
views
News:
NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI
DNA-Seq
NGS
RNA-Seq
updated 2 days ago by
Ram
38k • written 7.5 years ago by
rtliu
★ 2.2k
4
votes
7
replies
393
views
How to demultiplex single-end dual indexed run - NextSeq 500
sequencing
bcl2fastq
rna-seq
3 days ago by
Apex92
▴ 260
4
votes
3
replies
6.3k
views
Conversion Of Ped/Map Or Bim/Bim/ Fam Files To Dosage For Gwas Mit Probable And Comparison With Imputated Genotypes
imputation
plink
genotype
updated 5 days ago by
Ram
38k • written 10.0 years ago by
mathias.gorski
▴ 20
4
votes
6
replies
255
views
10x Cellranger SN RNA-seq BAM file output looks off
cellranger
samtools
star
bam
rna-seq
updated 2 days ago by
Ram
38k • written 2 days ago by
rebeliscu
▴ 50
4
votes
0
replies
2.6k
views
News:
Python for Scientists - FREE Ebook from O'Reilly
python
Data-Analysis
updated 2 days ago by
Ram
38k • written 7.5 years ago by
rtliu
★ 2.2k
4
votes
1
reply
5.5k
views
Methylation Data: Igv?
methylation
igv
updated 5 days ago by
Ram
38k • written 10.8 years ago by
Rm
8.2k
4
votes
5
replies
351
views
extract gene coordinates and TSS from gene list
r
genomicranges
1 day ago by
Chironex
▴ 40
4
votes
0
replies
90
views
Tool:
PyComplexHeatmap: a Python package to visualize multimodal genomics data
visualization
Python
ComplexHeatmap
PyComplexHeatmap
updated 4 days ago by
Ram
38k • written 4 days ago by
Wubin
▴ 40
4
votes
4
replies
246
views
Hard clip fastq
fastq
updated 6 days ago by
GenoMax
127k • written 6 days ago by
samuel
▴ 220
3
votes
6
replies
5.7k
views
How to filter sequencing reads in a fastq file by size?
Ribo-Seq
RNA-Seq
fastq
updated 5 days ago by
Ram
38k • written 4.0 years ago by
Beginner
▴ 70
3
votes
3
replies
826
views
GWASpower calculation
GWASpower
post-hoc
updated 5 days ago by
Ram
38k • written 19 months ago by
putty
▴ 40
3
votes
4
replies
2.5k
views
Matrix Building
python
matrix
updated 5 days ago by
Ram
38k • written 12.3 years ago by
Mcdenzlix
▴ 50
3
votes
4
replies
3.5k
views
How Can I Extract All The Read Pairs In A Region From Bam File ?
bam
updated 5 days ago by
Ram
38k • written 9.9 years ago by
siyu
▴ 150
3
votes
6
replies
418
views
ClusterProfiler enrichKEGG – remove organism name in plots?
KEGG
ggplot2
enrichKEGG
ClusterProfiler
updated 4 days ago by
jv
★ 1.0k • written 11 days ago by
Sian
▴ 20
3
votes
0
replies
3.0k
views
Forum:
Join us crowdsourcing an article on what makes a great open-source bioinformatics community
communities
open-source
crowd-source
article
updated 2 days ago by
Ram
38k • written 7.7 years ago by
aidan-budd
1.9k
3
votes
2
replies
233
views
How to make cut off linein cluster,
dendogram
Cutoff
R
updated 6 days ago by
GenoMax
127k • written 7 days ago by
Info.shi
▴ 30
3
votes
2
replies
4.2k
views
Orthomclpairs Doesnt Work
OrthoMclPairs
updated 5 days ago by
Ram
38k • written 11.0 years ago by
User 4041
▴ 20
3
votes
4
replies
395
views
differential gene analysis
DGE
3 days ago by
kalyani
• 0
3
votes
3
replies
230
views
PTM-aware protein folding / docking
docking
protein-structure
folding
updated 1 day ago by
Mensur Dlakic
★ 23k • written 3 days ago by
LChart
2.2k
403 results • Page
2 of 9
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Answer: Sequence statistics to report viruses (or bacteria and fungi) using Nanopore for
Answer: Sequence statistics to report viruses (or bacteria and fungi) using Nanopore for
Answer: how can i filter a sam file from a paf file
Answer: Align miRNA library (small RNA-seq) without trimming
Answer: Snakemake workflow for trimmomatic
C: Adjust for covariates
Comment: syntax errors when running part3 all-against-all
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Recent Replies
Answer: Getting Intron Positions from Amino Acid Sequences
by
fafad046
• 0
Do you happen to know why sometimes my Entrez direct command gives no output at all? I installed Entrez direct using the commands listed…
Comment: Getting Intron Positions from Amino Acid Sequences
by
fafad046
• 0
Do you happen to know why sometimes my Entrez direct command gives no output at all? I installed Entrez direct using the commands listed o…
Comment: Diffbind dba.count doesn't give FRiP score
by
gyspace
• 0
I found your email in https://bioinfotraining.bio.cam.ac.uk/staff/rory-stark-phd, is the email right? I sent a google drive link to you. If…
Comment: how can i filter a sam file from a paf file
by
colindaven
4.7k
Just save yourself a lot of pain and learn to filter the sam/bam file efficiently. It is much more of a widespread standard than PAF.
Comment: Snakemake workflow for trimmomatic
by
GenoMax
127k
Please accept this answer (green check mark) to provide closure to this thread.
Comment: syntax errors when running part3 all-against-all
by
Sofia
• 0
When I started with the gz all-vs-all files for CHICK and ANOCA and started oma, everything ran fine, I got output. Then, in the same direc…
Comment: Quality control of Chip-seq data (NRF and PCB)
by
michelafrancesconi9
• 0
Can you explain me better? Because for the NRF I do : a) samtools view -c .bam b)samtools view -c -F 260 .bam then b/a and as a bam fi…
Comment: pyCirclize - Circular visualization in Python
by
karenkvn
▴ 40
Thank you for responding so quickly - this works perfectly!
Comment: pyCirclize - Circular visualization in Python
by
moshi
▴ 110
Please install Biopython with v1.80 or higher. If biopython>=1.80, there should be no errors.
Comment: Gene family classification using RNA-seq data
by
Dion
• 0
well, I have been given the task to retrieve gene family/categorization. I found sveral papers on family classification, but no actual pack…
Comment: pyCirclize - Circular visualization in Python
by
karenkvn
▴ 40
Thank you for this wonderful programme! I am plotting a bacterial chromosome and find that when I plot the NC_000913 chromosome using the e…
Comment: SKAT in R
by
Eliza
▴ 20
@acvill can you sujjest maybe pther tools , methods for this ? ( also for every SNP i have data how many patients had the hetro/homozygous…
Comment: TCGA-BRCA tissue and RNAseq problem
by
pinheirofabiano
▴ 10
Go to https://portal.gdc.cancer.gov > Exploration > select TCGA and the cancer type you want > select case ID to download the files and hav…
Comment: Snakemake workflow for trimmomatic
by
antoine.fauchois92
• 0
Thank you very much for your reply ! It's working now !
Comment: Dependent p values
by
Eliza
▴ 20
@lchart I'm sorry for asking another of questions but I'm new to this field , can you please explain a little more how to use SKAT , saige…
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