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853 results • Page
3 of 18
Sort: Views
Rank
Views
Votes
Replies
4
votes
3
replies
4.7k
views
Gc Content Fungal
gc
updated 21 days ago by
Ram
41k • written 13.7 years ago by
Noyk
▴ 70
4
votes
9
replies
4.7k
views
Suggestions : Developing A Pipe-Line For Scanning Genomic Regions To Identify Known Genomic Elements
human
genome
pipeline
workflow
updated 24 days ago by
Ram
41k • written 13.7 years ago by
Khader Shameer
18k
20
votes
14
replies
4.7k
views
6 follow
Hardware Resources For Hpc In Bioinformatics
hpc
updated 24 days ago by
Ram
41k • written 13.7 years ago by
Jarretinha
3.4k
15
votes
16
replies
4.6k
views
Gene Expression Experiment Using Ngs Data
next-gen-sequencing
gene-expression
updated 18 days ago by
Ram
41k • written 13.6 years ago by
Eric Normandeau
11k
12
votes
4
replies
4.5k
views
How To Retrive The Dna Sequence From A List Of Embl And Geneid
genbank
dna
protein
uniprot
updated 24 days ago by
Ram
41k • written 13.7 years ago by
Kirsley
▴ 50
4
votes
8
replies
4.5k
views
7 follow
convert VCF to gVCF
gVCF
VCF
updated 25 days ago by
jena
▴ 270 • written 4.2 years ago by
mateid
• 0
7
votes
10
replies
4.5k
views
8 follow
Which method is the best for using in "dba.count" in Diffbind R package
ChIP-Seq
diffbind
updated 14 days ago by
Rory Stark
★ 2.0k • written 4.2 years ago by
m.sadman.sakib
▴ 120
22
votes
21
replies
4.4k
views
7 follow
Quick Programming Challenge: Calculate Common And Unique Regions From A List Of Chromosome Segments
programming
updated 18 days ago by
Ram
41k • written 13.6 years ago by
Khader Shameer
18k
8
votes
5
replies
4.4k
views
Exon Array Analysis Tools
gene
microarray
updated 21 days ago by
Ram
41k • written 13.7 years ago by
Chris Miller
22k
14
votes
5
replies
4.4k
views
How To Search Disease-Causing Chromosomal Structure Variation?
cnv
structural-variant
sv
updated 24 days ago by
Ram
41k • written 13.7 years ago by
Ma_Ko
▴ 100
16
votes
3
replies
4.3k
views
A Grep For Gene Ontology ?
gene
GO
updated 21 days ago by
Ram
41k • written 13.6 years ago by
Pierre Lindenbaum
158k
5
votes
1
reply
4.3k
views
Tutorial:
Yes .. BBMap can do that! - Part III clumpify (mark (and dedupe) duplicates without alignment), mutate (create mutant genomes) and other miscellaneou…
bbmap
5 hours ago by
GenoMax
136k
12
votes
15
replies
4.3k
views
8 follow
for go enrichment analysis which tool do you recommend?
RNA-Seq
go
updated 29 days ago by
Hamid Ghaedi
3.1k • written 3.2 years ago by
eridanus
▴ 40
27
votes
10
replies
4.2k
views
7 follow
Which Are All The Databases For Annotations Of Biological Pathways?
pathway
database
annotation
updated 21 days ago by
Ram
41k • written 13.6 years ago by
Giovanni M Dall'Olio
28k
6
votes
3
replies
4.2k
views
Ngs: How Many Reads Should Be Expected To Map To The Reference Sequence
next-gen-sequencing
short-read-aligner
updated 18 days ago by
Ram
41k • written 13.6 years ago by
Allpowerde
★ 1.3k
7
votes
5
replies
4.1k
views
Does Biopython Parse Blast -M8 Or -M9 (Aka Blasttable)?
biopython
python
updated 18 days ago by
Ram
41k • written 13.6 years ago by
Jeremy Leipzig
22k
3
votes
3
replies
4.0k
views
Playing With Mysql/Ensembl (I): Mapping 'Gene' To 'Xref'
ensembl
mysql
updated 24 days ago by
Ram
41k • written 13.7 years ago by
Pierre Lindenbaum
158k
0
votes
3
replies
4.0k
views
pheatmap lengends are being cutoff
pheatmap
legends
rstudio
heatmaps
updated 3 days ago by
Chris S.
▴ 320 • written 2.7 years ago by
enh
• 0
17
votes
7
replies
3.9k
views
How Difficult/Reliable Is It To Programmatically (Python) Look Up And Download Papers?
literature
python
text
updated 24 days ago by
Ram
41k • written 13.7 years ago by
Rvidal
▴ 270
18
votes
20
replies
3.9k
views
9 follow
Is There Any Useful Information To Be Gathered Analyzing The Genomes Of Different Populations Of Cicadas?
project
education
updated 24 days ago by
Ram
41k • written 13.7 years ago by
Scott
▴ 70
5
votes
6
replies
3.8k
views
Accessing Cyanobase With The Biomart / Getbm Method
biomart
r
updated 24 days ago by
Ram
41k • written 13.7 years ago by
John
▴ 790
13
votes
11
replies
3.8k
views
Tagging Pubmed With Umls
pubmed
text
updated 18 days ago by
Ram
41k • written 13.6 years ago by
Christiank
▴ 70
17
votes
2
replies
3.8k
views
Which Google Summer Of Code Projects Are Available For Bioinformatics In 2010?
project
updated 24 days ago by
Ram
41k • written 13.7 years ago by
Giovanni M Dall'Olio
28k
6
votes
3
replies
3.8k
views
How To Visualize Spliced Alignments Of Next Gen Sequencing Data?
splicing
next-gen-sequencing
visualization
updated 18 days ago by
Ram
41k • written 13.6 years ago by
Darked89
4.5k
1
vote
2
replies
3.7k
views
Chimeric alignment with minimap2
minimap2
nanopore
chimeric
updated 23 days ago by
xiaoleiusc
▴ 120 • written 6.0 years ago by
Nicolas Rosewick
10k
5
votes
8
replies
3.6k
views
Sufficient Specs for a laptop to work in bioinformatics
hardware
NGS
updated 17 days ago by
ashaneev07
▴ 20 • written 20 months ago by
ashwing.kofficial
▴ 10
17
votes
11
replies
3.6k
views
Which Is The Most Accurate Method To Align Multiple Nucleotide Sequences Without Prior Information?
alignment
sequence
updated 18 days ago by
Ram
41k • written 13.6 years ago by
Michael Barton
★ 1.8k
7
votes
7
replies
3.5k
views
Gap Alignment For Color Space Data (Blat For Color Space!)
blat
short
aligner
solid
updated 18 days ago by
Ram
41k • written 13.6 years ago by
seqseek
▴ 20
7
votes
13
replies
3.5k
views
6 follow
Is trimming necessary for RNAseq?
RNA-Seq
trimming
fastqc
updated 29 days ago by
ATpoint
78k • written 3.0 years ago by
Pac314
▴ 10
2
votes
3
replies
3.4k
views
Changing The X-Axis Of Seqlogo Figures In Matlab
matlab
sequence
java
updated 24 days ago by
Ram
41k • written 13.7 years ago by
Will
4.5k
14
votes
10
replies
3.4k
views
6 follow
Should I remove Kmers identified in FastQC?
Illumina
fastqc
NGS
updated 11 days ago by
GenoMax
136k • written 7.7 years ago by
Randomguy
▴ 30
36
votes
17
replies
3.4k
views
9 follow
Which Software Development Technique Is Used In Your Lab?
subjective
updated 24 days ago by
Ram
41k • written 13.7 years ago by
Giovanni M Dall'Olio
28k
13
votes
3
replies
3.3k
views
Amino Acid Content Statistical Test
statistics
amino-acids
updated 24 days ago by
Ram
41k • written 13.7 years ago by
Noyk
▴ 100
6
votes
3
replies
3.3k
views
Rna Data Sources???...Please Help
rna
secondary
updated 18 days ago by
Ram
41k • written 13.6 years ago by
Suhail
▴ 10
20
votes
5
replies
3.2k
views
How Do I Import Data From A Torrent Into A Bioperl, R, Bioclipse, Or Taverna Application?
R
bioperl
torrent
updated 24 days ago by
Ram
41k • written 13.7 years ago by
Egon Willighagen
5.4k
9
votes
3
replies
3.1k
views
Mendelian Filter
next-gen
sequencing
python
updated 18 days ago by
Ram
41k • written 13.6 years ago by
Biomed
4.9k
6
votes
5
replies
3.1k
views
Multi threading bowtie index
bowtie
indexing
updated 7 days ago by
colindaven
5.7k • written 8.2 years ago by
ChillarAnand
▴ 70
2
votes
3
replies
3.0k
views
Ensembl Compara Perl Api Taxon->Classification Error
api
ensembl
perl
bioperl
updated 18 days ago by
Ram
41k • written 13.6 years ago by
Cassj
★ 1.3k
3
votes
9
replies
3.0k
views
Questions For All Bioinformaticians
general
updated 24 days ago by
Ram
41k • written 13.7 years ago by
Susan
▴ 20
10
votes
9
replies
2.9k
views
Visualization of maf alignments in JBrowse
maf
conservation
Multiz-Alignments
updated 23 days ago by
cmdcolin
★ 3.4k • written 7.6 years ago by
ifreecell
▴ 220
9
votes
8
replies
2.9k
views
Microarray Analysis Open Software
open-software
microarray-analysis
updated 21 days ago by
Ram
41k • written 13.7 years ago by
Eric Normandeau
11k
4
votes
6
replies
2.9k
views
Gene Similarity Search
conservation
similarity
updated 18 days ago by
Ram
41k • written 13.6 years ago by
bow
▴ 790
7
votes
2
replies
2.8k
views
What Methods Do You Use To Select Somes Genes From A List Of Mutation ?
prediction
mutation
selection
snp
gene
updated 21 days ago by
Ram
41k • written 13.7 years ago by
Pierre Lindenbaum
158k
0
votes
4
replies
2.8k
views
How to get SNPs genotype matrix from vcf file for JoinMap analysis?
snp
next-gen
R
updated 20 days ago by
samadirn
• 0 • written 5.5 years ago by
gaurab.bhattarai46
▴ 10
1
vote
9
replies
2.7k
views
PCAtools data file not linking to metadata file
R
PCA
RNA-Seq
PCAtools
updated 8 days ago by
ATpoint
78k • written 3.4 years ago by
bryce.plu
▴ 10
6
votes
2
replies
2.7k
views
Adjacency Files For Abyss-Explorer
assembly
visualization
updated 24 days ago by
Ram
41k • written 13.7 years ago by
2184687-1231-83-
★ 5.1k
3
votes
11
replies
2.7k
views
6 follow
Salmon alignment based quantification
Salmon
rna-seq
quantification
updated 16 days ago by
Sruthi
• 0 • written 20 months ago by
biology_inform
▴ 50
17
votes
3
replies
2.7k
views
Forum:
How to Use Biostars Part-3: Formatting Text and Using GitHub Gists
meta
how-to
documentation
11 days ago by
Ram
41k
27
votes
4
replies
2.5k
views
How Should A Departing Programmer Organize Things For Successors?
software
updated 18 days ago by
Ram
41k • written 13.6 years ago by
Michael Hoffman
▴ 330
2
votes
5
replies
2.5k
views
Cross-Hybridization Of 25-Mer Probes.
affymetrix
probeset
updated 24 days ago by
Ram
41k • written 11.8 years ago by
Nelson
• 0
853 results • Page
3 of 18
Recent Votes
Answer: GO categorization
Comment: Using metagenome assembly and binning to identify and mitigate contamination in
Answer: GO categorization
C: Expected a file with 2 fields per line. GenomicsDBImport from GATK ?
C: Expected a file with 2 fields per line. GenomicsDBImport from GATK ?
Answer: Problematic fastq files...How can we trust them?
Comment: Problematic fastq files...How can we trust them?
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beausoleilmo
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Comment: Using metagenome assembly and binning to identify and mitigate contamination in
by
Brian Bushnell
19k
It's not a silly question! And yes, it can be done. JGI is currently testing various binning tools to try to find the best protocol for t…
Answer: GO categorization
by
geneontologyhelp
▴ 270
[We have this in our FAQ][1]. PANTHER version 18.0, which powers the enrichment analysis on our homepage, has [143 species][2] loaded and …
Comment: Problematic fastq files...How can we trust them?
by
blackadder
▴ 30
Thanks for the feedback fellas! I agree with the aforementioned!
Comment: Which program, tool, or strategy do you use to visualize genomic rearrangements?
by
cmdcolin
★ 3.4k
i collect a large list of tools for visualization, some are specialized for SVs and re-arrangements. you can filter by tag (SV, CNV, compar…
Answer: The number of variations in the pan-genome is reduced compared to the variations
by
Jordan M Eizenga
▴ 410
If variants overlap in the genome, `vg deconstruct` will combine them into one locus with multiple alleles. If your input VCF has a lot of …
Answer: How to find node Postion and source(sample) ?
by
Jordan M Eizenga
▴ 410
You can use `vg find -P` for this. This command is not really designed to be used frequently throughout the genome (each invocation loads t…
Comment: How Can I move the scattered dots more closer into the center of box ?
by
Brian Bushnell
19k
I would just draw them in by hand where you want them.
Comment: How to identify CG, CHG, or CHH from MeDIP data
by
Tm
★ 1.1k
I know that CpG types can be identified using whole genome bisulphite data. But could it be possible using MeDIP data too? We tried using Q…
Comment: Problematic fastq files...How can we trust them?
by
Brian Bushnell
19k
I'd have to agree there... while you can generally recover a fastq to the point that it is spec-compliant, you don't know how or why the f…
Answer: Finding human .vcf files online to download
by
cmdcolin
★ 3.4k
---------- some common ones include 1000 genomes vcf (large, multi-sample) http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/ …
Comment: GO categorization
by
m.habib
• 0
Thanks Istvan for your reply. I think these programs will do the same as Trinotate. Trinotate searches against numerous databases and gener…
Comment: scRNA-seq: Consistent low number of cells and low fraction reads across the samp
by
jv
★ 1.2k
I wonder if using cell hashing, which would allow pooling of cells from multiple samples before droplet formation, could improve things her…
Comment: Where Can I Find The Basepair Positions Of Chromosome Bands?
by
Malachi Griffith
19k
And the hg38 version can be found here: https://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/cytoBand.txt.gz And for convenience, upda…
Answer: How Can I move the scattered dots more closer into the center of box ?
by
Trivas
★ 1.5k
You added a position dodge on your boxplot but not on your points.
Comment: How Can I move the scattered dots more closer into the center of box ?
by
ATpoint
78k
Please understand that biostars is not a helpdesk for trivial ggplot questions. Google it and find help on previous StackExchange sites, or…
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