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News:
Upcoming online training courses
Python
R
19 months ago by
carlopecoraro2
★ 2.3k
7
votes
4
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2.4k
views
News:
Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python
training
updated 4 weeks ago by
Ram
38k • written 10.0 years ago by
Mary
11k
2
votes
4
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1.7k
views
News:
Reminder: Igb Tutorial Starts In 30 Minutes
visualization
genome-browser
RNA-seq
updated 27 days ago by
Ram
38k • written 9.5 years ago by
Ann
★ 2.3k
10
votes
4
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2.3k
views
News:
Ensembl 77 is out
ensembl
updated 14 months ago by
Ram
38k • written 8.5 years ago by
Emily
23k
5
votes
4
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1.6k
views
News:
2nd International Conference on Pediatric Oncology and Pediatric Medicine
gene
News
updated 6.1 years ago by
GenoMax
127k • written 6.1 years ago by
pediatriconcology
• 0
4
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4
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1.4k
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News:
VCFclin working group
vcfclin
updated 21 days ago by
Ram
38k • written 8.9 years ago by
keilbeck
▴ 30
1
vote
4
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1.5k
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News:
Bioconductor Development Visualization
bioconductor
updated 8 months ago by
Ram
38k • written 7.9 years ago by
Sean Davis
26k
0
votes
4
replies
468
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News:
Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl
GTF
updated 3 months ago by
Ben_Ensembl
★ 2.2k • written 4 months ago by
dlaehnemann
▴ 10
15
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4
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News:
Workshop: Genomic Data Visualization and Interpretation (Berlin, Germany)
R
next-gen
dataviz
GenVisR
News
6.1 years ago by
carlopecoraro2
★ 2.3k
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4
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1.8k
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News:
What NGS courses would you like us to prepare for 2016? (one week left)
NGS
Survey
Workshop
updated 7 months ago by
Ram
38k • written 7.3 years ago by
David Langenberger
9.9k
12
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4
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1.7k
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News:
#NGSchool2018 summer school in bioinformatics
NGSchool
Nanopore
Personalised Medicine
News
4.8 years ago by
kzkedzierska
▴ 290
6
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4
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News:
Genomic variation course at the EBI - Updated
variation
1000 Genomes
Ensembl
snps
News
6.9 years ago by
Emily
23k
2
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3
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News:
PDX Models: Tumor-stroma interaction
ChIP-Seq
R
pdx
transcriptome
News
5.7 years ago by
Pine Biotech
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15
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3
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6.4k
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News:
Top Bioinformatics Contributions Of 2013
bioinformatics
updated 26 days ago by
Ram
38k • written 9.3 years ago by
ugly.betty77
★ 1.1k
9
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3
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3.0k
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News:
New Human Genome Assembly (Grch38) Released
human-genome
assembly
updated 26 days ago by
Ram
38k • written 9.3 years ago by
Pierre Lindenbaum
153k
2
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3
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1.2k
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News:
Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation
rna-seq
rna extraction
dna extraction
Tool
News
updated 4.5 years ago by
WouterDeCoster
47k • written 4.5 years ago by
tpjurkowski
▴ 20
2
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3
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343
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News:
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Browser
NCBI
Alignments
Genome
3 months ago by
PeterC_NCBI
▴ 210
12
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3
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2.1k
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News:
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open source
job
Forum
News
updated 4.1 years ago by
ravi.eshwari
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Philipp Bayer
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3
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3
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News:
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updated 4 weeks ago by
Ram
38k • written 9.9 years ago by
bioinfo
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0
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3
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338
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News:
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NCBI
Submissions
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PeterC_NCBI
▴ 210
3
votes
3
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3.6k
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News:
A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
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updated 4 weeks ago by
Ram
38k • written 10.6 years ago by
Istvan Albert
97k
3
votes
3
replies
1.8k
views
News:
Workshop: Berlin. Data manipulation and visualization with Python. 13-17 March (Registration deadline is today!!)
SNP
next-gen
RNA-Seq
genome
News
6.2 years ago by
carlopecoraro2
★ 2.3k
3
votes
3
replies
739
views
News:
Want to automate your NGS analyses and create reproducible/scalable pipelines? Join our hands-on Nextflow workshop!
nextflow
NGS
pipeline
11 months ago by
David Langenberger
9.9k
0
votes
3
replies
980
views
News:
Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel
indel-calling
updated 3 months ago by
Ram
38k • written 9 months ago by
sarah_p
▴ 10
7
votes
3
replies
1.5k
views
News:
New NCBI Datasets home and documentation pages provide easier access
ncbi
gene
SARS-CoV-2
genome
updated 23 months ago by
Istvan Albert
97k • written 23 months ago by
e.cox
▴ 50
8
votes
3
replies
1.5k
views
News:
fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 18 months ago by
GenoMax
127k • written 19 months ago by
chen
★ 2.4k
5
votes
3
replies
1.3k
views
News:
Top GitHub repos for biomedicine
GitHub
software
open source
News
4.2 years ago by
field.cady
▴ 50
14
votes
3
replies
3.3k
views
News:
Updated: Conference/Symposium/Seminar/Workshop alert 2018-2019
bioinformatics
symposium
seminar
conference
News
updated 4.4 years ago by
sangram_keshari
▴ 260 • written 4.8 years ago by
lakhujanivijay
5.7k
5
votes
3
replies
1.3k
views
News:
Bioinfo-Core Conference Call, October 17, 2017 (11 am EDT USA, local times around world)
bioinfo-core
updated 6 days ago by
Ram
38k • written 5.6 years ago by
GenoMax
127k
4
votes
3
replies
1.6k
views
News:
Boston Genomics Hackathon (facilitated by NCBI)
RNA-Seq
hackathon
NCBI
DNA-seq
News
7.0 years ago by
DCGenomics
▴ 320
5
votes
3
replies
1.8k
views
News:
Nhgri Meeting About Human Variation Analysis Live Streaming [Now Done]
next-gen
exome
variation
updated 4 weeks ago by
Ram
38k • written 10.5 years ago by
Mary
11k
4
votes
3
replies
2.0k
views
News:
India Recently Started Personal Genome Profiling, Commercially.
genome-profiling
updated 4 weeks ago by
Ram
38k • written 9.9 years ago by
Naren
▴ 960
20
votes
3
replies
2.3k
views
News:
Nature Comment: Core services: Reward bioinformaticians
career-path
updated 9 months ago by
Ram
38k • written 8.0 years ago by
rtliu
★ 2.2k
18
votes
3
replies
2.2k
views
News:
LAST CALL: Next-Generation Sequencing Data Analysis: A Practical Introduction (Frankfurt, Germany) - 2 seats left
DNA-Seq
NGS
Workshop
Variant-Calling
updated 8 months ago by
Ram
38k • written 6.1 years ago by
David Langenberger
9.9k
7
votes
3
replies
3.5k
views
News:
Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
RNA-Seq
R
NGSdata
genome
News
4.3 years ago by
carlopecoraro2
★ 2.3k
2
votes
3
replies
1.4k
views
News:
GCCBOSC 2018: A Bioinformatics Community Conference Call for Abstracts
BOSC
GCC
Galaxy Community Conference
News
5.1 years ago by
Chris Fields
★ 2.2k
5
votes
3
replies
388
views
News:
March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core
pipeline
Nextflow
updated 7 days ago by
Maxime Garcia
▴ 230 • written 5 weeks ago by
Matthias Zepper
3.4k
7
votes
3
replies
4.2k
views
News:
Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api
cytoscape
updated 26 days ago by
Ram
38k • written 9.3 years ago by
B. Arman Aksoy
★ 1.2k
2
votes
3
replies
2.8k
views
News:
Summer Course On Analyzing Next-Generation Sequencing Data, June 10-20, Kellog Biological Station, Michigan State University
education
updated 4 weeks ago by
Ram
38k • written 10.2 years ago by
Istvan Albert
97k
22
votes
3
replies
2.7k
views
News:
Biostar: 10,000 Question Milestone
meta
updated 4 weeks ago by
Ram
38k • written 9.8 years ago by
Istvan Albert
97k
0
votes
3
replies
2.1k
views
News:
Eukaryotic Metabarcoding workshop
blast
alignment
next-gen
News
6.3 years ago by
carlopecoraro2
★ 2.3k
6
votes
3
replies
2.1k
views
News:
Become a Professional Biinformatician in NGS, Microarray in very fair price. Register for ArrayGen training program as soon as possible to get good a…
RNA-Seq
ChIP-Seq
next-gen
News
updated 6.1 years ago by
Brian Bushnell
18k • written 6.1 years ago by
Seema
• 0
4
votes
3
replies
3.0k
views
News:
CAFE v4.0 available
CAFE
phylogenetics
News
updated 3.5 years ago by
2018110660
• 0 • written 6.0 years ago by
Ben Fulton
▴ 150
0
votes
3
replies
513
views
News:
Nvidia Clara Parabricks is FREE for R&D
nvidia
workflow
gpu
updated 3 months ago by
4galaxy77
2.6k • written 3 months ago by
Pierre Lindenbaum
153k
0
votes
3
replies
2.0k
views
News:
Bioinformatics National Certification Examination (BINC)
BINC EXAM
News
updated 6.9 years ago by
Emily
23k • written 6.9 years ago by
binc
• 0
0
votes
3
replies
808
views
News:
EMBO | EMBL Symposium: Seeing is Believing - Imaging the Molecular Processes of Life
image analysis
News
4.4 years ago by
EMBL Events
• 0
0
votes
3
replies
2.5k
views
News:
Physalia-courses: 16S rRNA gene Metabarcoding Workshop
SNP
gene
rna-seq
sequencing
sequence
News
4.5 years ago by
carlopecoraro2
★ 2.3k
1
vote
3
replies
899
views
News:
4th Berlin Summer School in NGS Data Analysis - October 5-9, 2020
NGS
RNA-Seq
DNA-Seq
News
2.8 years ago by
David Langenberger
9.9k
4
votes
3
replies
1.7k
views
News:
Proteomics and Genomics Submit your Research Journals
Research
Genomics
Journals
Proteomics
updated 3 months ago by
Ram
38k • written 7.7 years ago by
saichandh.perkannex
• 0
4
votes
3
replies
2.6k
views
News:
-max_target_seqs 1 in NCBI standalone BLAST does not do what you think it does
software error
blast
News
updated 4.5 years ago by
Devon Ryan
103k • written 4.5 years ago by
5heikki
11k
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smoothing or binning bigWig file
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Comment: split fasta file to train deep learning model
by
shenwei356
7.9k
Excluding sequences containing any letter not belonging to the 20 [amino acids letters](https://github.com/shenwei356/bio/blob/master/seq/a…
Comment: split fasta file to train deep learning model
by
pinheirofabiano
▴ 10
@shenwei356, thank you very much for your help, perfect! But now I realized that some fasta sequences contain the letter "B", which is ou…
Comment: Most efficient way to run Diamond against a very very large database (i.e., NCBI
by
Mensur Dlakic
★ 23k
I think it depends on the speed of your local disks and the memory amount. On a single node, breaking up the database doesn't sound like a …
Comment: Sample size for population genetics
by
Jeremy Leipzig
21k
Other populations just make the model harder to generalize, not easier.
Comment: Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
by
Vincent Laufer
★ 2.5k
i think there is some of that - my most upvoted comment of all time was a dismissive comment i made while extremely tired. for context i ha…
Comment: Molecular biologist / clinical pharmacologist (f/m/d)
by
Jeremy
▴ 770
Is this job on site in Vienna or remote?
Comment: smoothing or binning bigWig file
by
rls_08
▴ 40
if you use bigwigCompare , that would not create a sliding window, but instead, it will output the mean for each bin, according to the -bin…
Comment: Sample size for population genetics
by
zimmer.schweiz
• 0
Thank you so much for your answer. For common polygenic diseases, would it make sense to increase the number of populations sampled, in ord…
Answer: Sample size for population genetics
by
Jeremy Leipzig
21k
For a rare penetrant monogenic disease? A few cases. For a common polygenic disease or trait? 500k-10M
Answer: using GRanges metadata to constrain overlap searches between objects
by
seidel
11k
Rather than do all overlaps all the time for all samples, why not restrict the data by sample when you can. The code below works about 4 ti…
Comment: How to get gene from PSIBLAST resuts
by
Tom
• 0
Hello, thank you for your answer, I have a question, Why the information from the GFF file and from the feature table is different? I see …
Comment: SNP ID (rsID) to Chr no. and Position
by
Jewahir
• 0
Yeah, thank you for that!!
Comment: 1000 genomes hg38 with dbSNP rsid
by
Ram
38k
It should be pretty straightforward. Just to save you some pain, run these on the 1000g VCF once you download it: 1. `vt decompose -s` to …
Comment: 1000 genomes hg38 with dbSNP rsid
by
Vince
▴ 150
Yeah, I had some hope that I wouldn't need to mess with doing this ...
Answer: counting the unmapped reads
by
chemkhi.ali13
• 0
> Hi all, > > I have a sam file, my supervisor asked me to count the number of > unmapped reads, which command I should use? > > sam…
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