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900 results • Page
3 of 18
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News:
Reminder: NCBI ClinVar XML update to accommodate somatic variants coming Jan 29, 2024
SNP
XML
ClinVar
NCBI
3 months ago by
PeterC_NCBI
▴ 410
0
votes
1
reply
1.3k
views
News:
Squeezing biology out of statistics: Gene set and pathway analysis in HT data. Berlin, 11-15 March
R
RNA-Seq
next-gen
ChIP-Seq
updated 11 months ago by
Ram
43k • written 5.3 years ago by
carlopecoraro2
★ 2.5k
6
votes
1
reply
1.0k
views
News:
uniprot.org is moving from HTTP to HTTPS
protein
database
uniprot
updated 11 months ago by
Ram
43k • written 6.4 years ago by
Elisabeth Gasteiger
★ 2.4k
0
votes
1
reply
1.1k
views
News:
Google Summer of Code 2020 announced for mentor organisations
internship
GSoC
updated 10 months ago by
Ram
43k • written 4.4 years ago by
Emily
23k
0
votes
1
reply
1.0k
views
News:
Help GIAB manually curate benchmark SVs!
giab
updated 11 months ago by
Ram
43k • written 5.9 years ago by
Pierre Lindenbaum
161k
3
votes
1
reply
1.5k
views
News:
Bioconductor 2017 Conference, Boston, July 26-28
R
conference
Bioconductor
updated 11 months ago by
Ram
43k • written 7.1 years ago by
Sean Davis
26k
3
votes
1
reply
1.4k
views
News:
Ensembl in Google Summer of Code
Ensembl
Internship
Google-Summer-of-Code
GSOC
updated 11 months ago by
Ram
43k • written 7.1 years ago by
Emily
23k
3
votes
1
reply
840
views
News:
PrecisionFDA has won a FedHealth IT award!!
platform
cloud-based
precision-medicine
award
updated 11 months ago by
Ram
43k • written 4.9 years ago by
stephens_sarah
▴ 150
0
votes
1
reply
804
views
News:
LAST CALL: Online Course - A Practical Introduction to NGS Data Analysis (February 28 - March 1, 2024)
NGS
Online-Workshop
updated 3 months ago by
Ram
43k • written 3 months ago by
David Langenberger
11k
4
votes
1
reply
1.2k
views
News:
Bioinformatics Workflows with Nextflow
Netflow
reproducibility
Workflows
updated 10 months ago by
Ram
43k • written 4.4 years ago by
carlopecoraro2
★ 2.5k
3
votes
1
reply
6.8k
views
News:
LinkedOmics - a web portal for TCGA/CPTAC data
TCGA
cptac
cancer
updated 11 months ago by
Ram
43k • written 6.4 years ago by
GenoMax
141k
0
votes
1
reply
1.6k
views
News:
:: FINALL CALL :: RNA-Seq Data Analysis Workshop for Beginners - Registraion to be closed
NGS
RNA-Seq
Training
updated 10 months ago by
Ram
43k • written 4.4 years ago by
David Langenberger
11k
1
vote
1
reply
272
views
News:
EMBL Course Hands-on course for sample preparation and data analysis in proteomics
EMBLProteomics
updated 6 weeks ago by
dr.eldeib89
• 0 • written 11 weeks ago by
EMBL Events
▴ 10
2
votes
1
reply
1.4k
views
News:
of the Galaxy: 17.05 Release, Galaxy Community Conference, and more
event
galaxy
paper
updated 11 months ago by
Ram
43k • written 6.9 years ago by
Dave Clements
▴ 610
6
votes
1
reply
2.9k
views
News:
"Oxford University Press to Publish NAR Genomics and Bioinformatics"
journal
updated 11 months ago by
Ram
43k • written 5.0 years ago by
Pierre Lindenbaum
161k
0
votes
1
reply
190
views
News:
Online NGS Training Program
next-gen-sequencing
RNA-Seq
ChIP-Seq
updated 11 months ago by
Ram
43k • written 4.8 years ago by
suvarna
• 0
0
votes
1
reply
585
views
News:
Getting started with R
R
updated 11 months ago by
Ram
43k • written 5.1 years ago by
carlopecoraro2
★ 2.5k
1
vote
1
reply
193
views
News:
Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser
IGB
updated 7 weeks ago by
Ram
43k • written 7 weeks ago by
IGB Helper
• 0
0
votes
1
reply
984
views
News:
Data visualization with Python
snp
next-gen
sequencing
updated 11 months ago by
Ram
43k • written 5.5 years ago by
carlopecoraro2
★ 2.5k
2
votes
1
reply
1.6k
views
News:
BIOSG17 Workshop on High Throughput Computing in Bioinformatics/Biomedicine using OSG
Workshop
OSG
Biomedicine
HTC
updated 11 months ago by
Ram
43k • written 6.7 years ago by
natasha.pavlovikj
▴ 10
2
votes
1
reply
876
views
News:
Gene set enrichment and pathway analysis in HT data
next-gen-sequencing
RNA-Seq
updated 11 months ago by
Ram
43k • written 5.2 years ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
789
views
News:
Advanced R Programming Course
R
updated 11 months ago by
Ram
43k • written 6.0 years ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
1.1k
views
News:
Registration deadline: Comparative genomics
snp
SVs
updated 11 months ago by
Ram
43k • written 5.7 years ago by
carlopecoraro2
★ 2.5k
2
votes
1
reply
2.0k
views
News:
Genomic Data Visualization and Interpretation Workshop
next-gen
R
genome
RNA-Seq
updated 11 months ago by
Ram
43k • written 6.9 years ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
839
views
News:
FINAL CALL: Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2023
DNA-seq
Workshop
RNA-seq
6 months ago by
David Langenberger
11k
0
votes
1
reply
1.1k
views
News:
New Alexa skill provides voice-based access to Protein Data Bank data
protein-structure
pdb
updated 11 months ago by
Ram
43k • written 6.5 years ago by
gregorybquinn
• 0
1
vote
1
reply
1.7k
views
News:
2nd Berlin Summer School in NGS Data Analysis 2018
DNA-Seq
Workshop
NGS
RNA-Seq
updated 11 months ago by
Ram
43k • written 6.1 years ago by
David Langenberger
11k
0
votes
1
reply
1.4k
views
News:
Online Workshop - A Practical Introduction to NGS Data Analysis (May 27-29,2020)
NGS
DNA-seq
Workshop
updated 10 months ago by
Ram
43k • written 4.0 years ago by
David Langenberger
11k
0
votes
1
reply
723
views
News:
Our New Publication "Machine learning to support social media empowered patients in cancer care and cancer treatment decisions"
Machine-Learning
Health-Informatics
updated 11 months ago by
Ram
43k • written 5.5 years ago by
lmanohara99
▴ 20
0
votes
1
reply
945
views
News:
FINAL CALL: RNA-Seq Data Analysis Workshop (March 11 - 14, 2024 in Berlin, Germany)
NGS
RNA-Seq
Workshop
11 weeks ago by
David Langenberger
11k
4
votes
1
reply
1.8k
views
News:
Bioinformatics Contest 2018
contest
updated 11 months ago by
Ram
43k • written 6.3 years ago by
ksenya1.618
▴ 40
3
votes
1
reply
2.3k
views
News:
NCBI : New API Keys for the E-utilities
pubmed
eutils
ncbi
api
updated 11 months ago by
Ram
43k • written 6.5 years ago by
Pierre Lindenbaum
161k
2
votes
1
reply
1.1k
views
News:
PrecisionFDA and NCI-CPTAC Mislabeling Challenge is Launching on September 24th!
precision-medicine
NCI
FDA
proteomics.RNA
updated 11 months ago by
Ram
43k • written 5.6 years ago by
stephens_sarah
▴ 150
2
votes
1
reply
461
views
News:
Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
NCBI
Codeathon
updated 7 months ago by
chrchang523
10k • written 7 months ago by
PeterC_NCBI
▴ 410
0
votes
1
reply
1.5k
views
News:
Live Webinar on RNA-Seq Data Analysis on 28 Feb 2018
splice-variants
RNA-Seq
alignment
Strand-NGS
updated 11 months ago by
Ram
43k • written 6.2 years ago by
Genomics
▴ 70
0
votes
1
reply
1.1k
views
News:
FINAL CALL - Workshop - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (November 8-10, 2023 in Berlin)
workshop
RNA-Seq
scRNA-Seq
single-cell
6 months ago by
David Langenberger
11k
0
votes
1
reply
1.8k
views
News:
Spatio-temporal Transcriptome of LncRNAs in Human Brain
Parkinson
lncRNA
Alzheimer
brain
transcriptome
updated 11 months ago by
Ram
43k • written 6.8 years ago by
lsp03yjh
▴ 860
1
vote
1
reply
1.9k
views
News:
Bioinformatics Contest 2017. Results
contest
updated 11 months ago by
Ram
43k • written 7.1 years ago by
pavlov.ivan095
▴ 70
0
votes
1
reply
371
views
News:
Online Course - Genomic Prediction
Genomic-Prediction
Selective-Breeding
updated 3 months ago by
Ram
43k • written 3 months ago by
carlopecoraro2
★ 2.5k
1
vote
1
reply
1.7k
views
News:
Bioinformatics for Beginners @NIH, (Bethesda, MD, USA) Feb 13 - 16, 2018
beginners
training
updated 11 months ago by
Ram
43k • written 6.5 years ago by
AABI
▴ 140
1
vote
1
reply
934
views
News:
Webinar on Extensive Assessment of Gene Fusion Detection, Prioritization, Annotation and Characterization on 11 March 2020
detection
webinar
RNA-Seq
gene-fusion
updated 10 months ago by
Ram
43k • written 4.2 years ago by
Strand NGS
▴ 40
2
votes
1
reply
671
views
News:
NGS & Microarray Custom Data Analysis Training Program
next-gen-sequencing
RNA-Seq
ChIP-Seq
updated 11 months ago by
Ram
43k • written 4.8 years ago by
guddi
• 0
0
votes
1
reply
1.4k
views
News:
Webinar on Leukocyte immunobiology by Dr. Mario Deng, Professor of Medicine, UCLA on 9 Aug 2017, 8am PST
UCLA
transcriptome-analysis
RNA-Seq
Strand-NGS
updated 11 months ago by
Ram
43k • written 6.8 years ago by
Genomics
▴ 70
0
votes
1
reply
649
views
News:
International Conference on Renewable & Non-Renewable Energy
next-gen
updated 11 months ago by
Ram
43k • written 5.9 years ago by
energy
• 0
3
votes
1
reply
1.4k
views
News:
GATK returns to a fully open-source license
gatk
updated 11 months ago by
Ram
43k • written 6.9 years ago by
Istvan Albert
100k
3
votes
1
reply
1.2k
views
News:
UniProt: Change of FT and CC section in UniProtKB text format
uniprot
protein
updated 10 months ago by
Ram
43k • written 4.6 years ago by
Elisabeth Gasteiger
★ 2.4k
0
votes
1
reply
2.3k
views
News:
Webinar on Unique Molecular Identifier (UMI)-powered Ultra-sensitive Variant Calling using Strand NGS - Case Study
Strand-NGS
NGS
RNA-Seq
UMI
dna-seq
updated 11 months ago by
Ram
43k • written 6.5 years ago by
Genomics
▴ 70
0
votes
1
reply
613
views
News:
Bioinformatics Training Program
next-gen-sequencing
genome
RNA-Seq
updated 11 months ago by
Ram
43k • written 4.8 years ago by
guddi
• 0
0
votes
1
reply
1.5k
views
News:
Symposium, Accelerating Biology 9-11, Jan, 2018 : Digitizing Life, Pune, India
symposium
NGS
updated 11 months ago by
Ram
43k • written 6.6 years ago by
lakhujanivijay
5.8k
0
votes
1
reply
617
views
News:
EMBL-EBI virtual course | Introduction to RNA-seq and functional interpretation
RNA-seq
updated 7 months ago by
Ram
43k • written 7 months ago by
Rebecca
• 0
900 results • Page
3 of 18
Recent Votes
Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
A: How to process (seems) Agilent microarrry data?
Comment: genome assembly records not present in assembly_summary.txt
Answer: genome assembly records not present in assembly_summary.txt
Answer: PCA plot (Suggestions Needed)
Comment: PCA plot (Suggestions Needed)
Comment: PCA plot (Suggestions Needed)
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Recent Replies
Comment: Low mapping rate with Salmon
by
i.sudbery
19k
Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
Comment: How to convert plink files to Hapmap Format
by
bk11
★ 2.4k
If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value. https://www.b…
Comment: genome assembly records not present in assembly_summary.txt
by
sapuizait
▴ 10
jesus its in the Genbank file and I was looking at the refseq! I m such a moron - thanks for pointing it out -sorry about that :(
Comment: ScRNA data question
by
bk11
★ 2.4k
I wonder how the `Vlnplots` will look if you normalize the data using `NormalizeData()` function in `Seurat`. The flat line in your plot ar…
Comment: Low mapping rate with Salmon
by
GenoMax
141k
> Does that mean that the reads that are not mapped to my trascriptome are not exons/coding genes? Reads are likely aligning in regions wh…
Comment: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
cmdcolin
★ 3.8k
the gencode link is broken now but here is a back up of that blogpost on archive https://web.archive.org/web/20130618221342/http://gencodeg…
Comment: Low mapping rate with Salmon
by
Patadu94
• 0
I'll try to make the decoy file again but I remember you also told me that it is only recommended and not mandatory for running `salmon`. I…
Comment: Low mapping rate with Salmon
by
Patadu94
• 0
For doing this, should I just look at the log.out.file?
Answer: Heatmap and rna-seq
by
pinheirofabiano
▴ 10
install.packages("pheatmap") library(pheatmap) setwd("/Users/data_analysis/results") data <- read.table(file…
Comment: Low mapping rate with Salmon
by
Patadu94
• 0
Thanks for the link GenoMax. But I was wondering, should not alignment and mapping have a similar rate and thus be correlated? In my case I…
Answer: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
bedtools intersect \ -a <(sort -t $'\t' -k1,1 -k2,2n A.bed) \ -b <(awk '{X=250000;P=int($2);printf("%s\t%d\…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
• 0
The command lines I wrote out for you are the ones I actually used. My original reference to bedtools intersect was because I assumed the b…
Comment: ScRNA data question
by
starswillfade
▴ 10
I just thought it was weird that considering each dot is a cell their expressions were all on a single line instead of being spread out lik…
Comment: ScRNA data question
by
starswillfade
▴ 10
![enter image description here][1] I am already using Seurat V5 I think. I am using SCTransform as it was recommended by the seurat page. I…
Answer: genome assembly records not present in assembly_summary.txt
by
GenoMax
141k
Can you clarify what `metainfo` you are referring to? The accession that you refer to does exist in [**GenBank assembly_summary file**][1…
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