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1,000 results • Page 2 of 20
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11
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0
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3.2k
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News: BWA 0.7.11 is out, supports ALT contigs
BWA
updated 8 months ago by 41k • written 9.0 years ago by 104k
11
votes
1
reply
2.0k
views
News: Upcoming Hands-On Workshop: De Novo Transcriptome Assembly and Analysis
Workshop Assembly RNA-Seq
updated 8 months ago by 41k • written 7.5 years ago by 10k
11
votes
11
replies
1.6k
views
8 follow
News: Python Data Visualization Course. Last 3 spots left
next-gen
updated 6 months ago by 41k • written 5.1 years ago by ★ 2.4k
11
votes
25
replies
5.7k
views
15 follow
News: Questions for the NCBI Next Generation Sequencing Online Workshop Can be Posted with the NCBI_NOW Tag
NCBI_NOW
updated 8 months ago by 41k • written 8.2 years ago by ▴ 330
11
votes
2
replies
1.4k
views
News: ASA discusses limitations of p-values what are the alternatives?
statistics p-value
updated 8 months ago by 41k • written 7.7 years ago by 14k
11
votes
2
replies
3.6k
views
News: Coursera: Computational Molecular Evolution
course
updated 9 months ago by 41k • written 10.5 years ago by 158k
10
votes
0
replies
2.0k
views
News: Pan-Cancer Analysis of RNA Binding Proteins in ~7000 tumor samples
Pan-Cancer mutations TCGA RNA-seq cancer-driver
updated 6 months ago by 41k • written 5.9 years ago by ▴ 850
10
votes
7
replies
2.2k
views
News: Free draft copy of book on bioinformatics tools
alignment Assembly RNA-seq next-gen
updated 10 months ago by 41k • written 8.6 years ago by ★ 1.1k
10
votes
0
replies
2.9k
views
News: Cfp: Camda 2013 Challenge: Big Data In Life Sciences
ngs conference
updated 9 months ago by 41k • written 10.7 years ago by ▴ 240
10
votes
1
reply
1.9k
views
News: Run on 1st Berlin Summer School in NGS Data Analysis
DNA-Seq RNA-Seq NGS
updated 7 months ago by 41k • written 6.8 years ago by 10k
10
votes
17
replies
3.1k
views
7 follow
News: Tell us what you think of the ENA browser?
ena
updated 7 months ago by 41k • written 7.1 years ago by ★ 1.8k
10
votes
4
replies
1.1k
views
News: RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS transcriptomics workshop
updated 8 months ago by ▴ 30 • written 10 months ago by 10k
10
votes
1
reply
3.0k
views
News: Ucsc: Dna Sequences In Web Pages Indexed By Bing.Com / Microsoft Research (All Phenotype And Literature Tracks)
web ucsc
updated 9 months ago by 41k • written 9.9 years ago by 158k
10
votes
4
replies
1.6k
views
News: 3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS RNA-Seq DNA-Seq
updated 6 months ago by 41k • written 4.9 years ago by 10k
9
votes
4
replies
3.6k
views
News: Conference Announcement - Camda 2013
conference classification
updated 9 months ago by 41k • written 10.9 years ago by ▴ 240
9
votes
0
replies
2.2k
views
News: Commercial advertising on Biostars
meta biostars advertising
updated 9 months ago by 41k • written 9.2 years ago by 99k
9
votes
4
replies
1.4k
views
News: Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq
updated 6 months ago by 41k • written 5.8 years ago by ★ 1.8k
9
votes
3
replies
3.2k
views
News: New Human Genome Assembly (Grch38) Released
human-genome assembly
updated 9 months ago by 41k • written 10.0 years ago by 158k
9
votes
5
replies
10k
views
8 follow
News: Online course: Learn Bioinformatics in 100 hours
biostars online-course
updated 9 months ago by 41k • written 6.3 years ago by 99k
9
votes
6
replies
2.0k
views
News: No more hidden solutions in bioinformatics
precision-medicine genome-sequencing
updated 10 months ago by 41k • written 8.6 years ago by ★ 1.2k
9
votes
5
replies
3.5k
views
News: SAMTOOLS 1.4 released
samtools
updated 7 months ago by 41k • written 6.7 years ago by 158k
9
votes
5
replies
8.6k
views
News: A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg api
updated 9 months ago by 41k • written 11.1 years ago by ▴ 50
9
votes
4
replies
2.3k
views
7 follow
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 4 months ago by 41k • written 2.3 years ago by ★ 2.5k
9
votes
3
replies
4.7k
views
News: Bioinformatics Contest 2020. Call for problems
contest
updated 6 months ago by 41k • written 4.2 years ago by ▴ 860
8
votes
8
replies
2.7k
views
News: Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook education
updated 6 months ago by 41k • written 3.8 years ago by 99k
8
votes
2
replies
2.2k
views
News: The bioinformatics chat is a new podcast about bioinformatics. In the first episode we discuss Scallop, a transcriptome assembler
podcast Assembly RNA-Seq
updated 6 months ago by 41k • written 6.6 years ago by ▴ 120
8
votes
0
replies
2.1k
views
News: A Call To Create Listings Of The Best Review Papers
papers
updated 9 months ago by 41k • written 11.3 years ago by 99k
8
votes
3
replies
1.7k
views
News: Impact of outdated gene annotations on pathway enrichment analysis
pathway-enrichment gene-ontology david go
updated 8 months ago by 41k • written 7.2 years ago by 5.1k
8
votes
6
replies
3.9k
views
News: Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 9 months ago by 41k • written 10.9 years ago by 10k
8
votes
2
replies
839
views
News: Save time and money through improved onboarding of your NGS data scientists
NGS data-analysis
updated 8 months ago by 41k • written 3.9 years ago by 10k
8
votes
0
replies
2.7k
views
News: Plos Computational Biology: Translational Bioinformatics
publications plos
updated 9 months ago by 41k • written 10.7 years ago by 9.7k
8
votes
0
replies
1.2k
views
News: Final Call - Hands-On RNA-Seq Data Analysis Workshop - only 2 seats left
data-analysis RNA-Seq workshop
updated 6 months ago by 41k • written 4.4 years ago by 10k
8
votes
6
replies
17k
views
News: Bioinformatics PhD Programs in the US
education PhD
updated 6 months ago by 41k • written 6.0 years ago by ▴ 70
8
votes
4
replies
1.8k
views
News: supporting vg users on biostars
variation-graph genome vg vgteam
updated 6 months ago by 41k • written 4.2 years ago by ★ 2.4k
8
votes
6
replies
1.4k
views
News: Illumina to Acquire Pacific Biosciences
pacbio illumina
updated 6 months ago by 41k • written 5.1 years ago by 99k
8
votes
1
reply
3.3k
views
News: LAST DAY TO REGISTER - NGS Workshop 2015: A Practical Introduction to NGS Data Analysis (Oxford, UK)
RNA-Seq workshop
updated 9 months ago by 41k • written 9.1 years ago by 10k
8
votes
0
replies
1.8k
views
News: Upcoming Workshop: Introduction to R in Biology
workshop R
updated 7 months ago by 41k • written 6.8 years ago by 10k
8
votes
1
reply
2.6k
views
News: An Interesting Article On Bioinformatics Education With Some Press For Biostar
meta biostars
updated 9 months ago by 41k • written 10.4 years ago by 11k
7
votes
0
replies
954
views
News: New layout for NCBI BLAST FTP database site starting February 4, 2020
ftp blast blast_index blast-plus
updated 6 months ago by 41k • written 3.9 years ago by 136k
7
votes
2
replies
2.2k
views
News: Upcoming Hands-On Workshop: microRNA Analysis Using Next-Generation Sequencing
NGS microRNA workshop
updated 8 months ago by 41k • written 7.5 years ago by 10k
7
votes
3
replies
3.8k
views
News: Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
R RNA-Seq genome NGSdata
updated 6 months ago by 41k • written 6.4 years ago by ★ 2.4k
7
votes
11
replies
1.9k
views
News: Bringing the power of Big Data to biomedical researchers
NGS biomedical-research
updated 6 months ago by 41k • written 6.3 years ago by ▴ 100
7
votes
1
reply
3.0k
views
News: A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs mapping
updated 9 months ago by 41k • written 9.8 years ago by 10k
7
votes
0
replies
1.8k
views
News: Us Ethics Panel Reports On Dna Sequencing And Privacy
next-gen
updated 9 months ago by 41k • written 11.2 years ago by 11k
7
votes
3
replies
4.4k
views
News: Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api cytoscape
updated 9 months ago by 41k • written 10.0 years ago by ★ 1.2k
7
votes
8
replies
1.7k
views
News: A new Stack Exchange site for Research Computing
unix linux
updated 6 months ago by 41k • written 6.0 years ago by ▴ 690
7
votes
0
replies
1.4k
views
News: First PacBio Sequel data available
pacbio sequel
updated 8 months ago by 41k • written 7.2 years ago by 136k
7
votes
4
replies
2.6k
views
News: Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python training
updated 9 months ago by 41k • written 10.7 years ago by 11k
7
votes
0
replies
1.9k
views
News: CIViC Hackathon and Curation Jamboree at NGS in Molecular Pathology Meeting, NKI, Nov 30 - Dec 2
meeting civic hackathon NKI
updated 8 months ago by 41k • written 7.3 years ago by ▴ 290
7
votes
0
replies
2.8k
views
News: Correction for "A benchmark for RNA-seq quantification pipelines"
RNA-seq
updated 8 months ago by 41k • written 7.5 years ago by ▴ 70
1,000 results • Page 2 of 20
Recent Votes
Problems with colors in FeaturePlot after integration in Seurat
Problems with colors in FeaturePlot after integration in Seurat
A: Get number of variations in a huge VCF using Tabix?
Peak annotation with HOMER. Statistics with the annStats parameter
Answer: How to create a mutation frequency comparison plot?
Answer: Ambient RNA removal method that generates whole (integer) counts
A: Is It Valid To Convert A Fold Change Matrix Into Z Score?
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Recent Replies
Comment: Resolving over clustered NGS with Q-scores by sam.himes92 • 0
Yes at 5%.
Comment: Resolving over clustered NGS with Q-scores by ATpoint 78k
Has phiX been spiked in to increase nucleotide diversity.
Comment: How is "integer score for display" calculated in MACS2 by SplitInf ▴ 10
since this is one of the top search results, I'm cross-posting this comment from another user (alexbarrera) "that the values of the 5th co…
Comment: Very low successfully assigned alignments with feature counts by Istvan Albert 99k
Load up your data in IGV and visualize it relative to your annotation file. It will tell you where the data aligns. 5% match on a 99% ali…
Answer: Ambient RNA removal method that generates whole (integer) counts by jared.andrews07 ★ 16k
I've definitely just rounded soupX output and had no issues with pseudobulking. A colleague speaks highly of Cellbender, though it take…
Comment: Curated model organism gene functional annotations by manaswwm ▴ 490
I thought Interproscan already has species-specific information, for example [this][1] page for Buchnera aphidicola. You can try to search …
Comment: Aligning sequences with multiple genetic codes! by 5heikki 11k
I don't understand your problem. What do you mean when you write: > These genes even in the same species may use different genetic codes. …
Comment: An issue with gtf file (ballgownrsem) by cucindarko51 • 0
I also encountered issues when running ballgownrsem with gff files. Ballgown object was created, there is no informations about TPM and FPK…
Answer: Scanpy Pearson residual PCA error by Maëlick • 0
I had the same problems and then realize that I forgot the preprocessing! If you add this commands before running the PCA, it should work:…
Comment: Calculate GC content for entire chromosome by colindaven 5.8k
Try tripling your example seq length, see 20bp min region -l INT min region length to output [20] To answer your question, it …
Comment: Very low successfully assigned alignments with feature counts by GenoMax 136k
Is the genome/annotation from the same source i.e. Ensembl or so it appears?
Comment: Calculate GC content for entire chromosome by ATpoint 78k
What does this do? It's not documented well and does not work for me in terms of, it produces no output: cat foo.fa >chr1 GCGC…
Comment: Need help to find FASTA sequence from dbSNP by GenoMax 136k
Did you not see the last part in my comment above about how to get the sequence?
Comment: Execute R command on specific termimal by QX • 0
Hi @atpoint Thank you for your answer!
Comment: Need help to find FASTA sequence from dbSNP by syedahumairagillani • 0
Thank you for your response. Actually I am looking for fasta sequence of SNP as I shared via image, rather than just location. Would you p…
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