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235 results • Page 2 of 5
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6.3k
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News: A Bioinformatics Jobs AMA (Ask Me Anything) on Reddit
reddit r market
updated 5 months ago by 37k • written 7.1 years ago by ▴ 960
3
votes
2
replies
3.5k
views
News: Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
rna-seq News
updated 4 months ago by 37k • written 10.1 years ago by 20k
3
votes
3
replies
704
views
News: Want to automate your NGS analyses and create reproducible/scalable pipelines? Join our hands-on Nextflow workshop!
nextflow NGS pipeline
9 months ago by David Langenberger 9.8k
3
votes
0
replies
1.5k
views
News: Human Genome Project: Twenty-five years of big biology
Human-Genome-Project
updated 4 months ago by 37k • written 7.3 years ago by 7.0k
3
votes
0
replies
355
views
News: Tutorial on SemiBin (metagenonomics binning tool). June 14 - online
metagenomics binning
updated 8 months ago by 125k • written 8 months ago by ▴ 60
3
votes
0
replies
1.3k
views
News: Large scale cancer RNA-Seq study (more than 5k samples were analyzed in this study)
RNA-Seq cancer
updated 7 months ago by 37k • written 7.8 years ago by 9.8k
3
votes
0
replies
2.8k
views
News: Statistics and R for the Life Sciences from Harvard University (Start: 19 Jan 2015)
edX statistics
updated 10 months ago by 37k • written 8.0 years ago by ★ 2.2k
3
votes
0
replies
1.4k
views
News: Restructuring the 1000 Genomes FTP site
sequencing SNP alignment
updated 4 months ago by 37k • written 7.4 years ago by ★ 1.8k
3
votes
4
replies
1.7k
views
News: OmicCircos was updated
R OmicCircos
updated 8 months ago by 37k • written 7.9 years ago by ▴ 50
3
votes
0
replies
1.9k
views
News: Big Data in Healthcare Symposium, Luxembourg, 28/29 October 2015
big-data conference medicine health
updated 4 months ago by 37k • written 7.4 years ago by ▴ 130
3
votes
0
replies
544
views
News: Nextflow Slack Channel
nextflow slack
11 months ago by ATpoint 68k
3
votes
0
replies
2.8k
views
News: Introduction to Python for Biologists and Advanced Python for Biologists courses
Python
updated 22 days ago by 37k • written 7.7 years ago by ★ 3.7k
3
votes
0
replies
2.4k
views
News: Bioinformatics Specialization on Coursera
MOOCs Education
updated 3 months ago by 37k • written 7.4 years ago by ▴ 50
2
votes
0
replies
1.0k
views
News: Biotech Weekly - First issue is out! - Weekly curated news about all things biotech
biotech
updated 7 weeks ago by 37k • written 7.6 years ago by ▴ 30
2
votes
0
replies
98
views
News: Course - Reproducibility in Bioinformatics
Bioinformatics Reproducibility
1 day ago by carlopecoraro2 ★ 2.2k
2
votes
0
replies
1.4k
views
News: The Mozilla Fellowship for Science - Deadline Aug 14, 2015
open-science open-data
updated 3 months ago by 37k • written 7.5 years ago by 4.9k
2
votes
0
replies
2.7k
views
News: New article on TCGA data & useful resource: Comprehensive Genomic Characterization of Long Non-coding RNAs across Human Cancers
RNA-Seq long-noncoding-RNAs
updated 5 months ago by 37k • written 7.3 years ago by 7.4k
2
votes
2
replies
1.7k
views
News: BioC 2015, Bioconductor Annual Conference, July 20-22, Seattle, WA
Bioconductor Conference
updated 6 months ago by 37k • written 7.8 years ago by ★ 1.6k
2
votes
0
replies
2.0k
views
News: Learn how to use IGB with Galaxy for RNA-Seq - Nov 12, 2014
igb galaxy RNA-Seq
updated 11 months ago by 37k • written 8.2 years ago by ★ 2.3k
2
votes
2
replies
459
views
News: ISO usability testers for NCBI comparative genome viewer
comparative eukaryotic alignment pangenome
12 months ago by SanjidaR_NCBI ▴ 20
2
votes
0
replies
1.8k
views
News: NCI Up for a Challenge (U4C) in Breast Cancer Epidemiology
cancer-epidemiology
updated 5 weeks ago by 37k • written 7.6 years ago by 26k
2
votes
0
replies
223
views
News: Four NCBI workshops in October (BLAST, Primer-BLAST, Metagenome analysis, Structures in iCn3D)
metagenomics MagicBLAST BLAST NCBI Primer-BLAST
3 months ago by PeterC_NCBI ▴ 180
2
votes
0
replies
1.8k
views
News: Workshop on Computational and Data Challenges in Genomic Sequencing
sequencing genome
updated 4 months ago by 37k • written 7.3 years ago by ▴ 20
2
votes
0
replies
329
views
News: UniProt: Annotation of biologically relevant ligands using ChEBI
binding protein site metal uniprot chebi
7 months ago by Elisabeth Gasteiger ★ 2.2k
2
votes
3
replies
271
views
News: NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser NCBI Alignments Genome
6 weeks ago by PeterC_NCBI ▴ 180
1
vote
2
replies
508
views
News: Online training - Introduction to Nextflow
Bionfirmatics Pipeline Workflow Netflow
5 months ago by carlopecoraro2 ★ 2.2k
1
vote
0
replies
203
views
News: Webinar (free) on Multimodal Single-Cell Data from winner of NeurIPS 2021
ATAC-seq CITE-seq scRNA-seq
4 months ago by Alexander ▴ 70
1
vote
1
reply
2.3k
views
News: R package PopGenome: http://popgenome.weebly.com/
population genomics popgenome R VCF News
updated 6 months ago by 37k • written 7.8 years ago by ▴ 50
1
vote
4
replies
1.4k
views
News: Bioconductor Development Visualization
bioconductor
updated 6 months ago by 37k • written 7.8 years ago by 26k
1
vote
0
replies
1.8k
views
News: Computational Biology student/post doc In the UK or EU? Come to our Bioinformatics Student Symposium!
student sequencing genome symposium
updated 4 months ago by 37k • written 7.4 years ago by ▴ 10
1
vote
0
replies
261
views
News: DATA ANALYSIS WITH THE TIDYVERSE in July (18th-21st).
tidyverse data R analysis
9 months ago by carlopecoraro2 ★ 2.2k
1
vote
5
replies
539
views
News: Cancer Genomics course - 2 seats left
CancerGenomics Genomics R Bioinformatics
updated 18 days ago by ★ 2.2k • written 21 days ago by ★ 2.2k
1
vote
0
replies
220
views
News: course Reproducible Analysis With R
R Reproducibility analysis Data
4 months ago by carlopecoraro2 ★ 2.2k
1
vote
2
replies
385
views
News: New chat server (Discord) for bioinformatics
community
19 days ago by Samuel Lampa ★ 1.3k
1
vote
0
replies
230
views
News: Use your standard DNA variant caller for SNP calling in Bisulfite-Seq data
bisulfite BS-Seq methylation
7 months ago by David Langenberger 9.8k
1
vote
0
replies
259
views
News: Introduction to Nextflow
Nextflow
updated 7 weeks ago by 37k • written 3 months ago by ★ 2.2k
1
vote
6
replies
539
views
News: Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometry R
updated 15 days ago by ▴ 70 • written 6 weeks ago by ★ 2.2k
1
vote
2
replies
229
views
News: Course: Network Analysis in R
NetworkAnalyis R
5 days ago by carlopecoraro2 ★ 2.2k
1
vote
2
replies
282
views
News: Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis R Cancer-Genomics GSEA
12 weeks ago by carlopecoraro2 ★ 2.2k
1
vote
1
reply
2.2k
views
News: Bioinformatics for Cancer Genomics Workshop
Cancer-Genomics
updated 6 months ago by 37k • written 7.0 years ago by ▴ 30
1
vote
0
replies
481
views
News: New ebook: From cell line to Command line to learn computational biology
snakemake biology unix RNAseq computational
4 weeks ago by Ming Tang ★ 2.9k
1
vote
0
replies
1.6k
views
News: Announcement: Workshop GATK Best Practices for Variant Discovery, 20-21 April 2015, Edinburgh, UK
SNP next-gen
updated 9 months ago by 37k • written 8.0 years ago by ★ 3.7k
1
vote
0
replies
381
views
News: Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge is now live!
oncopanel indel-calling
updated 6 weeks ago by 37k • written 9 months ago by ▴ 10
1
vote
0
replies
285
views
News: 2-day Snakemake course with Johannes Köster
Snakemake
12 months ago by carlopecoraro2 ★ 2.2k
1
vote
1
reply
1.2k
views
News: Genomic Medicine Meeting VIII: NHGRI's Genomic Medicine Portfolio; livestream June 8-9
precision-medicine
updated 25 days ago by 37k • written 7.6 years ago by 11k
1
vote
0
replies
361
views
News: :: LAST CALL :: Bioinformatics Pipeline Development with Nextflow (April 4-7, 2022)
NGS Pipeline-Development Nextflow
updated 6 weeks ago by 37k • written 10 months ago by 9.8k
1
vote
0
replies
255
views
News: New version of ElasticBLAST (1.0.0) available.
NCBI ElasticBLAST BLAST
5 weeks ago by PeterC_NCBI ▴ 180
1
vote
0
replies
153
views
News: Analysis of Cancer Genomes Using R and Bioinformatic Tools
Genomics Cancer-Genomics R
updated 7 weeks ago by 37k • written 7 weeks ago by ★ 2.2k
1
vote
0
replies
215
views
News: course: Meta-analysis in R
Statistics MetaAnalysis R
13 days ago by carlopecoraro2 ★ 2.2k
1
vote
0
replies
248
views
News: Reproducibility in Bioinformatics Workshop
Reproducibility
updated 6 weeks ago by 37k • written 10 months ago by ★ 2.2k
235 results • Page 2 of 5
Recent Votes
A: from .BAM to .BAI using samtools
Comment: bgzip error 4
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
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Popular Question to tianshenbio ▴ 160
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Recent Replies
Answer: trainGlimmerHMM Error while training a genome by congliu37 • 0
Hello, I got the same error using ~20,000 genes for training and it was solved by reducing training gene set. I assume GlimmerHMM was no…
Comment: How to Calulate Allele Frequency from a VCF File? by Jeremy Leipzig 21k
That's correct. You don't have biallelic alleles in mitochondria, so you can use either the Allele depth (AD) or depth of coverage (DP) for…
Comment: How to calculate tumor mutation burden (TMB)? by Fabio Marroni ★ 2.9k
I just published a [post][1] on my blog, in which I include a simple R function for computing TMB. Try to see if that helps. I followed the…
Comment: Gene Set Enrichment Analysis, pathway, metabolism by Rob ▴ 160
Thank you FrankStarling, ATpoint, jv, these were so helpful.
Comment: translate CDS to prot formatted with nt nubers by Pierre Lindenbaum 152k
> with nucleotide numbers and DNA/prot aligned line by line what does it mean ? Create a Minimal, Reproducible Example to enable others t…
Comment: How to translate CDS to an amino acid sequence by vvasta • 0
I tried several of the online DNA translation tools but have not found one that would output DNA/prot alignment with nucleotide number w…
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb? by Pierre Lindenbaum 152k
but you already knew it. https://www.biostars.org/p/9551097/#9551098
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb? by Pierre Lindenbaum 152k
your question is not related to bioinformatics. Ask stackoverflow.com.
Comment: Statistical test for checking cis regulation? by Fabio Marroni ★ 2.9k
Hi lumos. It is not very clear to me what kind of information are you using for the test and how are you measuring cis-regulation. Are you …
Comment: Error 134 while aligning using hisat2 by Fabio Marroni ★ 2.9k
Other instances of the same error were indeed related to disk [space][1]. Can you post the output of the command: `df -h /bams/`? Another p…
Comment: **Error: unable to open file or unable to determine types for file** by Pierre Lindenbaum 152k
``` Please ensure that your file is TAB delimited (e.g., cat -t FILE). - Also ensure that your file has integer chromosome coordinates in t…
Comment: bgzip error 4 by Pierre Lindenbaum 152k
I/O error. Where are you writing , which filesytem ? do you have enough space ? what is the output of gzip < chr1.vcf.gz > chr1.vcf.gz…
Comment: Error: unable to open file or unable to determine types for file bed file by Neel ▴ 10
**Error: unable to open file or unable to determine types for file** Hi i am trying to run this commands **bedtools intersect -a Ec_k1…
Answer: Anti-miRNA oligonuclotide identification by Asan Emirsale • 0
You should find complementary sequences to make the miRNA silent. Should it be the Biopython or another tool. The solution might be as simp…
Comment: counting reads in a fastq file using a refrence fasta file by vaslanzadeh ▴ 10
Thanks, this works but it is extremely slow, is there any other alternatives?
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