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News: FastQC Version 0.11.1 released
genome next-gen-sequencing
updated 14 months ago by 44k • written 10.0 years ago by ★ 2.2k
8
votes
1
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3.4k
views
News: LAST DAY TO REGISTER - NGS Workshop 2015: A Practical Introduction to NGS Data Analysis (Oxford, UK)
RNA-Seq workshop
updated 14 months ago by 44k • written 9.6 years ago by 11k
2
votes
1
reply
886
views
News: Gene set enrichment and pathway analysis in HT data
next-gen-sequencing RNA-Seq
updated 12 months ago by 44k • written 5.3 years ago by ★ 2.5k
5
votes
1
reply
2.3k
views
News: New version of the GATB library
minia next-gen gatb dsk
updated 2.3 years ago by 44k • written 9.3 years ago by ▴ 730
1
vote
1
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946
views
News: ONLINE TRAINING -GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
genome assembly Nanopore
updated 15 months ago by 44k • written 3.4 years ago by ★ 2.5k
11
votes
1
reply
4.2k
views
News: GATB will provide developer support via Biostar
minia dsk gatb
updated 2.3 years ago by 44k • written 10.0 years ago by ★ 1.5k
1
vote
1
reply
706
views
News: 20% Off - Bioinformatics Pipeline Development with Nextflow (May 15-17 in Leipzig, Germany)
NGS nextflow RNAseq pipelines DNAseq
13 months ago by David Langenberger 11k
6
votes
1
reply
2.0k
views
News: Massively Differential Bias Between Two Widely Used Illumina Library Preparation Methods For Small Rna Sequencing
illumina RNA-seq
updated 15 months ago by 44k • written 10.4 years ago by 11k
2
votes
1
reply
1.1k
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News: PrecisionFDA and NCI-CPTAC Mislabeling Challenge is Launching on September 24th!
precision-medicine NCI FDA proteomics.RNA
updated 12 months ago by 44k • written 5.7 years ago by ▴ 150
1
vote
1
reply
1.8k
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News: Article: Crowdfunding Genomics And Bioinformatics
crowdfunding
updated 15 months ago by 44k • written 10.6 years ago by 8.3k
0
votes
1
reply
479
views
News: Research Training In NGS Data Analysis
analysis data-analysis
updated 18 months ago by 44k • written 18 months ago by • 0
0
votes
1
reply
1.4k
views
News: Online Workshop - A Practical Introduction to NGS Data Analysis (May 27-29,2020)
NGS DNA-seq Workshop
updated 11 months ago by 44k • written 4.1 years ago by 11k
4
votes
1
reply
2.4k
views
News: ENCODE Users' Meeting
encode ucsc conference functional-genomics ensembl
updated 22 months ago by 44k • written 9.0 years ago by 23k
7
votes
1
reply
696
views
News: NGSymposium - Conference in Computational Biology, 23-24.09
ML statistics conference ngschool
2.0 years ago by kzkedzierska ▴ 290
0
votes
1
reply
625
views
News: Bioinformatics Training Program
next-gen-sequencing genome RNA-Seq
updated 12 months ago by 44k • written 4.9 years ago by • 0
3
votes
1
reply
1.5k
views
News: Bioconductor 2017 Conference, Boston, July 26-28
R conference Bioconductor
updated 12 months ago by 44k • written 7.2 years ago by 27k
8
votes
1
reply
1.8k
views
News: Clustered `nr` database is now available for web blast @NCBI
nr blast
updated 2.3 years ago by ★ 27k • written 2.4 years ago by 142k
0
votes
1
reply
892
views
News: :: FINAL CALL :: Bioinformatics Pipeline Development with Nextflow (only 3 seats left)
pipeline nextflow development
2.6 years ago by David Langenberger 11k
0
votes
1
reply
433
views
News: Courses in March. -still a few seats available
Bioconductor Genomics R
updated 15 months ago by 44k • written 15 months ago by ★ 2.5k
0
votes
1
reply
1.1k
views
News: ::FINAL CALL:: Online Course | A Practical Introduction to NGS Data Analysis | March 30 - April 1, 2022
DNA-Seq RNA-Seq Workshop
2.2 years ago by David Langenberger 11k
4
votes
1
reply
1.2k
views
News: Bioinformatics Workflows with Nextflow
Netflow reproducibility Workflows
updated 11 months ago by 44k • written 4.5 years ago by ★ 2.5k
6
votes
1
reply
1.9k
views
News: Are protein domains indivisible?
Athropy Domains Proteins
updated 14 months ago by 44k • written 9.0 years ago by ★ 4.2k
0
votes
1
reply
1.3k
views
News: 5th Berlin Summer School in NGS Data Analysis 2021 (October 4-8)
DNA-Seq Workshop RNA-Seq NGS
updated 15 months ago by 44k • written 3.3 years ago by 11k
1
vote
1
reply
685
views
News: Sign-ups for the St. Jude KIDS23 BioHackathon (May 3-5th) open through March 15th!
stjude hackathon
14 months ago by jared.andrews07 ★ 17k
2
votes
1
reply
2.0k
views
News: New NPG journal "Human Genome Variation"
journal SNP variation
updated 14 months ago by 44k • written 9.6 years ago by 162k
0
votes
1
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1.6k
views
News: Symposium, Accelerating Biology 9-11, Jan, 2018 : Digitizing Life, Pune, India
symposium NGS
updated 12 months ago by 44k • written 6.6 years ago by 5.8k
6
votes
1
reply
1.1k
views
News: uniprot.org is moving from HTTP to HTTPS
protein database uniprot
updated 12 months ago by 44k • written 6.4 years ago by ★ 2.4k
0
votes
1
reply
795
views
News: Advanced R Programming Course
R
updated 12 months ago by 44k • written 6.1 years ago by ★ 2.5k
16
votes
1
reply
5.0k
views
News: Samtools/htslib/bcftools 1-3 released
htslib samtools bcftools
updated 13 months ago by 44k • written 8.5 years ago by 104k
0
votes
1
reply
1.6k
views
News: Course: RADseq data analysis in Berlin (4-8/12/17). LAST CALL
STACKs RADseq
updated 12 months ago by 44k • written 6.5 years ago by ★ 2.5k
3
votes
1
reply
2.7k
views
News: Ngs Session At Biocomp Bg 2012 Conference!
next-gen-sequencing
updated 15 months ago by 44k • written 12.0 years ago by ▴ 50
4
votes
1
reply
1.4k
views
News: The 1000 Genomes Project Data Portal Beta Release
1000genomes next-gen SNP
updated 13 months ago by 44k • written 8.1 years ago by ★ 1.8k
4
votes
1
reply
1.9k
views
News: Bioinformatics Contest 2018
contest
updated 12 months ago by 44k • written 6.4 years ago by ▴ 40
1
vote
1
reply
1.7k
views
News: Igb Service Interruption - Backup Site Address
genome-browser RNA-seq
updated 15 months ago by 44k • written 10.6 years ago by ★ 2.4k
5
votes
1
reply
1.2k
views
News: Paid opportunity: need microbiome experts for a survey and test of robustness
survey
updated 15 months ago by 44k • written 3.6 years ago by 22k
0
votes
1
reply
1.2k
views
News: Journal Paper: Data Mining and Pattern Recognition Models for Identifying Inherited Diseases: Challenges and Implications
sequencing snp gene inherited-diseases
updated 13 months ago by 44k • written 7.8 years ago by ▴ 20
1
vote
1
reply
1.2k
views
News: Codondex $100,000 Bio Hunt Awards
RNA-Seq sequencing gene
updated 13 months ago by 44k • written 7.6 years ago by • 0
0
votes
1
reply
732
views
News: Our New Publication "Machine learning to support social media empowered patients in cancer care and cancer treatment decisions"
Machine-Learning Health-Informatics
updated 12 months ago by 44k • written 5.6 years ago by ▴ 20
1
vote
1
reply
1.7k
views
News: 2nd Berlin Summer School in NGS Data Analysis 2018
DNA-Seq Workshop NGS RNA-Seq
updated 12 months ago by 44k • written 6.2 years ago by 11k
2
votes
1
reply
1.6k
views
News: BIOSG17 Workshop on High Throughput Computing in Bioinformatics/Biomedicine using OSG
Workshop OSG Biomedicine HTC
updated 12 months ago by 44k • written 6.8 years ago by ▴ 10
0
votes
1
reply
563
views
News: Courses in January - still a few seats available
R-Shiny Genomics Unix R
updated 15 months ago by 44k • written 17 months ago by ★ 2.5k
2
votes
1
reply
1.7k
views
News: Meet Dr. Giovanni Marco Dall'Olio
NGS training RNA-Seq
updated 12 months ago by 44k • written 5.2 years ago by 11k
0
votes
1
reply
642
views
News: EMBL-EBI virtual course | Introduction to RNA-seq and functional interpretation
RNA-seq
updated 8 months ago by 44k • written 8 months ago by • 0
0
votes
1
reply
1.5k
views
News: How Are Virtual Clinical Trials Changing the Clinical Trial Landscape? Learn More October 21, 2016
clinical-trials
updated 13 months ago by 44k • written 7.6 years ago by ▴ 60
7
votes
1
reply
3.1k
views
News: A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs mapping
updated 15 months ago by 44k • written 10.3 years ago by 11k
0
votes
1
reply
1.0k
views
News: Data visualization with Python
snp next-gen sequencing
updated 12 months ago by 44k • written 5.6 years ago by ★ 2.5k
3
votes
1
reply
6.8k
views
News: LinkedOmics - a web portal for TCGA/CPTAC data
TCGA cptac cancer
updated 12 months ago by 44k • written 6.5 years ago by 142k
0
votes
1
reply
983
views
News: ::LAST CALL:: RNA-Seq Data Analysis Workshop, February 28 - March 3, 2022 in Berlin
RNAseq Transcriptomics RNA
2.3 years ago by David Langenberger 11k
10
votes
1
reply
2.0k
views
News: Run on 1st Berlin Summer School in NGS Data Analysis
DNA-Seq RNA-Seq NGS
updated 13 months ago by 44k • written 7.3 years ago by 11k
4
votes
1
reply
666
views
News: Online Course - A Practical Introduction to NGS Data Analysis (September 26-28, 2022)
workshop ngs data-analysis
updated 22 months ago by 44k • written 22 months ago by 11k
1,000 results • Page 8 of 20
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Answer: How do i calculate the mean of triplicates in a data.frame based on pattern?
How do i calculate the mean of triplicates in a data.frame based on pattern?
C: snpEff assigned all variants as modifier intergenic
A: Problem in indexing toplevel genome with HISAT2
C: The Biostar Handbook. A bioinformatics e-book for beginners.
Answer: Error with BiocParallel. No barcodes files found
Error with BiocParallel. No barcodes files found
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Recent Replies
Answer: txt file to bigwig by sogand • 0
Hi all, I am new to these kind of analysis and appreciate any guidance on my issue here: I have analyzed peakcalling .txt files that are r…
Answer: Help me with Heatmap by MolGeek ▴ 50
Hello! So, what is the correct design ? You will have to ask yourself, what do you want to compare? WT vs mut? If so it will be strain. 2…
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1) you have to say what question you are actually asking. There are few different designs that would address different questions. 2) work…
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mmmm I am not sure. This is how I generate my consnsus sequence # Get consensus fastq file samtools mpileup -uf KT992094.1.fasta…
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Why do you have those N's at the beginning of the sequence? If the remainder of the sequence matches 100% then the initial N's may be wrong…
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It's nice that you've gone ahead and done some analysis of these results and their differences on your data yourself. These more general qu…
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In this location there is an "entrez" file which maps ensembl IDs to Entrez. It's probably as definitive as you're going to find: https://…
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Tried it just recently with almost the same results. 456 out of 496 IDs for protein-coding genes returned as "NA" even though I can see NCB…
Answer: Download All The Bacterial Genomes From Ncbi by 2284046470 • 0
wget https://ftp.ncbi.nlm.nih.gov/genomes/refseq/bacteria/assembly_summary.txt awk -F '\t' '{if($12=="Complete Genome" && $11=…
Answer: How do i calculate the mean of triplicates in a data.frame based on pattern? by dariober 14k
I'm a happy user of [data.table](https://rdatatable.gitlab.io/data.table/): ``` library(data.table) dat <- structure(list(sgrna = c("Cont…
Comment: How do i calculate the mean of triplicates in a data.frame based on pattern? by Assa Yeroslaviz ★ 1.9k
I know it can be done with something like that: ``` cbind(p767.AM = (rowMeans(p767[,2:4])), p767.MM = (rowMeans(p767[,5:7]…
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Why is your `GeneName` column in mapped a mix of Ensembl IDs and gene names? What Jared wants to say is that during the preprocessing you s…
Comment: Python script to query GeneCards to get EntrezID, symbol from Ensembl geneID by GenoMax 142k
> only give me partial results It is possible that not every Ensembl ID is going to convert to Entrez ID. Have you tried: https://www.b…
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You have a space in your reference path. Not sure it's intended?
Comment: Python script to query GeneCards to get EntrezID, symbol from Ensembl geneID by Anya • 0
Do you have any recommendations of such sources or how to search for them? I'm a newbie and I need to convert GRCh38 Ensembl IDs to Entrez …
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