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Limit : this year
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1,000 results • Page
3 of 20
Sort: Votes
Rank
Views
Votes
Replies
5
votes
7
replies
3.3k
views
STAR aligner pauses frequently during mapping
rna-seq
STAR
updated 10 months ago by
Ram
41k • written 8.6 years ago by
E Chen
• 0
5
votes
1
reply
581
views
Learning Linux advance commands
grep
awk
linux
sed
updated 8 weeks ago by
Zhitian Wu
▴ 60 • written 13 months ago by
rheab1230
▴ 140
5
votes
6
replies
1.0k
views
I can not allocate ram memory for WSL2
WSL2
8 months ago by
ailton
• 0
5
votes
4
replies
1.0k
views
Running nf-core rnaseq with smart-seq3 data
smart-seq3
nf-core
nextflow
11 months ago by
firestar
★ 1.6k
5
votes
11
replies
3.4k
views
Convert Plink to Arlequin
software-error
plink
Arlequin
PGDSpider
updated 8 months ago by
Ram
41k • written 5.6 years ago by
HG
▴ 30
5
votes
2
replies
716
views
how to loop through various dataframes in R
dataframe
R
updated 11 months ago by
zx8754
11k • written 11 months ago by
rheab1230
▴ 140
5
votes
7
replies
631
views
About the value in bigwig file
ATAC-seq
updated 4 months ago by
rfran010
▴ 880 • written 4 months ago by
Chris
▴ 230
5
votes
8
replies
1.7k
views
looking for tools to detect RNA contamination in DNA
RNA-Seq
DNA-Seq
contamination
QC
updated 6 weeks ago by
Jingjingzhang
• 0 • written 3.3 years ago by
from the mountains
▴ 230
5
votes
10
replies
939
views
the distribution of log2Fc and t value are not similar for bulk RNA-seq
decoupleR
RNA-seq
3 months ago by
alwayshope
▴ 40
5
votes
5
replies
1.7k
views
bio-newbie / gene research / tools and methods
methods
research
gene
updated 6 months ago by
Ram
41k • written 5.9 years ago by
wizofe
• 0
5
votes
8
replies
834
views
conda: command not found: gatk.
conda
gatk
5 months ago by
bestone
▴ 20
5
votes
4
replies
453
views
FASTQ to BAM to CRAM to FASTQ
Samtools
4 weeks ago by
ManuelDB
▴ 80
5
votes
12
replies
996
views
Data from an experiment
single-cell
updated 9 months ago by
GenoMax
136k • written 9 months ago by
Chris
▴ 230
5
votes
2
replies
525
views
30 bp sequence that does not show hit within a genome
similarity
updated 10 months ago by
shenwei356
8.3k • written 10 months ago by
GR
▴ 400
5
votes
7
replies
813
views
Are datasets for a unique cells, that downloded using sratoolkit?
RNA-Seq
sequencing
updated 6 months ago by
supernovamik
• 0 • written 3.9 years ago by
ee.mohseni.alert
▴ 50
5
votes
3
replies
369
views
Visualisation of accessible regions in single cell atacseq data
visualization
scATAC-seq
single-cell
updated 11 weeks ago by
Ram
41k • written 11 weeks ago by
sarahmanderni
▴ 100
5
votes
3
replies
700
views
GENE code ID conversion
ensembl
entrez
8 months ago by
Confused_human
▴ 10
5
votes
7
replies
703
views
RNAseq analysis of phage infection - should I split the counts mapping to host/phage prior to normalization and analysis?
RNAseq
Prokaryotic
7 months ago by
Sean
▴ 10
5
votes
5
replies
2.2k
views
Quickly retrieve reference genome sequence within python
sequence
python
updated 4 weeks ago by
Feng Tian
▴ 20 • written 5.2 years ago by
gewa
▴ 20
5
votes
4
replies
1.8k
views
MyVariant.info fields descriptions?
genome
snp
variant
updated 8 months ago by
Ram
41k • written 7.5 years ago by
Nolwenn Lavielle
▴ 90
5
votes
6
replies
1.4k
views
Filter out Bam not overlapping with Bed File (keeping a read and its mate)?
samtools
bam
bed
updated 5 months ago by
Ram
41k • written 13 months ago by
Eliveri
▴ 350
5
votes
1
reply
499
views
Challenges in Variant Calling and Genotyping with Short-Read Data Mapped to a Pangenome Graph: Seeking Guidance
vg
pggb
giraffe
updated 6 weeks ago by
Jordan M Eizenga
▴ 410 • written 6 weeks ago by
Kyran
▴ 30
5
votes
8
replies
1.9k
views
SV calling using giraffe/vg
vg
Giraffe
calling
structural
variant
updated 4 months ago by
Jordan M Eizenga
▴ 410 • written 10 months ago by
TN
• 0
5
votes
6
replies
1.3k
views
DESeqDataSetFromHTSeqCount function taking long time and utilizing more RAM
DESeq2
R
RNA-Seq
updated 5 months ago by
Ram
41k • written 3.6 years ago by
Ranan Jyoti Sarma
▴ 90
5
votes
6
replies
1.9k
views
check duplicates in two columns
ChIP-Seq
sequencing
SNP
updated 11 months ago by
Ram
41k • written 8.5 years ago by
marcoabbestia
• 0
5
votes
35
replies
3.0k
views
Reduce set of chromosomes in Pangenome graph
pangenome
vg
updated 4 months ago by
Jordan M Eizenga
▴ 410 • written 5 months ago by
anivlete
• 0
5
votes
8
replies
1.3k
views
snpeff install error
snpeff
updated 6 months ago by
Ram
41k • written 7 months ago by
bestone
▴ 20
5
votes
2
replies
3.1k
views
Cut & run - bowtie2 dovetail option
cut and run
dovetail
bowtie2
updated 10 months ago by
baijiangshan9726
• 0 • written 3.1 years ago by
blur
▴ 280
5
votes
3
replies
327
views
Strand bias in supplementary alignments from Nanopore
minimap2
nanopore
strand
updated 23 days ago by
cmdcolin
★ 3.4k • written 24 days ago by
dariober
14k
5
votes
6
replies
3.2k
views
Can't access DAVID
DAVID
updated 11 months ago by
Ram
41k • written 8.4 years ago by
komal.rathi
★ 4.1k
5
votes
2
replies
246
views
RNA Contamination Tool for Developing Cell Samples
contamination
scRNA
quality
RNA
SoupX
6 days ago by
Rafael Soler
★ 1.2k
5
votes
4
replies
941
views
Converting Bam file to Fasta (Zipped)
bedtools
samtools
updated 5 months ago by
Ram
41k • written 13 months ago by
Eliveri
▴ 350
5
votes
14
replies
3.6k
views
How to Calulate Allele Frequency from a VCF File?
frequency
allele
VCF
updated 10 months ago by
Jeremy Leipzig
22k • written 10 months ago by
Emoji
• 0
5
votes
1
reply
399
views
Enricher with Gene Symbols
DGE
ClusterProfiler
Enrich
ORA
updated 3 months ago by
bk11
★ 1.8k • written 3 months ago by
Manuel Sokolov Ravasqueira
▴ 100
5
votes
7
replies
1.2k
views
error while using cyvcf2 to parse the vcf file
cyvcf2
vcf
htslib
updated 6 months ago by
Ram
41k • written 18 months ago by
rheab1230
▴ 140
5
votes
10
replies
687
views
Error when viewing a bam file
samtools
updated 5 months ago by
Ram
41k • written 7 months ago by
Chris
▴ 230
4
votes
4
replies
502
views
Feedback on mouse brain scRNA-seq quality control
mouse
brain
singe-cell
scRNAseq
quality-control
3 months ago by
nshenoy
▴ 50
4
votes
7
replies
771
views
exome and genome data
exome
vcf
genome
gene
gnomad
updated 11 months ago by
Ram
41k • written 11 months ago by
Eliza
▴ 30
4
votes
5
replies
700
views
VEP run with --af_gnomadg refuses to provide allele frequencies for extremely rare variants
vep
gnomad
updated 3 months ago by
Louisse_Ensembl
▴ 60 • written 3 months ago by
Jeremy Leipzig
22k
4
votes
45
replies
7.0k
views
SAM file wrong? help with validatesamfile
EXOME
updated 7 months ago by
Ram
41k • written 7.4 years ago by
cristina_sabiers
▴ 110
4
votes
2
replies
2.3k
views
dbFetch from EBI with bogus accession number returns valid record
EBI
dbFetch
updated 10 months ago by
Ram
41k • written 8.5 years ago by
Jeroen Van Goey
2.3k
4
votes
4
replies
2.7k
views
What Statistical Test Is Appropriate When Comparing Rna-Seq Data Obtained From Biological Replicates Mapped To Different Genomes
RNA-seq
updated 9 months ago by
Ram
41k • written 10.9 years ago by
xs57
▴ 20
4
votes
3
replies
706
views
Testing overlap significance of three gene sets using the hypergeometric distribution
Hypergeometric-distribution
gene-sets
7 months ago by
Pac314
▴ 10
4
votes
7
replies
2.5k
views
low bootstrap value?
phylogeny
genome
alignment
updated 6 months ago by
Ram
41k • written 4.5 years ago by
Kumar
▴ 120
4
votes
5
replies
1.3k
views
Distributed / parallel computing in bioinformatics
distributed-computing
updated 6 months ago by
Ram
41k • written 6.4 years ago by
CY
▴ 730
4
votes
9
replies
974
views
Aligning fastq files using STAR
RNA
loop
STAR
HG
Sequencing
11 months ago by
kcarey
• 0
4
votes
7
replies
2.7k
views
How to move the files from sub folder and sub-sub folders into one other folder?
bash
updated 8 months ago by
Ram
41k • written 2.4 years ago by
mathavanbioinfo
▴ 70
4
votes
3
replies
381
views
Identifying enhancers that regulate certain genes
enhancers
updated 4 months ago by
rfran010
▴ 880 • written 4 months ago by
Rozita
▴ 20
4
votes
12
replies
1.5k
views
Bulk RNA seq: all p adjusted are the same
p-adj
RNA-seq
differential-gene-expression
updated 11 months ago by
Ram
41k • written 18 months ago by
nils.simon.biology
▴ 10
4
votes
1
reply
3.0k
views
How Do I Get A Gff Files Or Make My Own For A Bacteriophage?
gtf
gff
updated 8 months ago by
Ram
41k • written 10.7 years ago by
joaslucas
▴ 90
1,000 results • Page
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