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1,000 results • Page
5 of 20
Sort: Votes
Rank
Views
Votes
Replies
3
votes
1
reply
407
views
FastQC duplicates questions
FastQC
RNA-seq
9 months ago by
Beth
▴ 10
3
votes
9
replies
818
views
Understanding this analysis pipeline
reads
updated 10 months ago by
Ram
43k • written 10 months ago by
artemchuki
• 0
3
votes
7
replies
6.4k
views
Human reference files in HG38 GATK resource bundle
VCF
updated 11 months ago by
DareDevil
★ 4.3k • written 6.3 years ago by
win
▴ 980
3
votes
6
replies
4.1k
views
how do Differential gene expression analysis by Salmon output
differential-gene-expression
Salmon
updated 5 weeks ago by
Ram
43k • written 5.6 years ago by
lkianmehr
▴ 100
3
votes
6
replies
882
views
scRNA-seq: Consistent low number of cells and low fraction reads across the samples
scRNA-seq
cells
mRNA
expression
gene
updated 5 months ago by
jv
★ 1.8k • written 5 months ago by
newbee
▴ 40
3
votes
5
replies
1.1k
views
Neither pysam nor samtools reading HTTPS-sourced BAM file correctly
bam
pysam
samtools
updated 8 months ago by
Istvan Albert
100k • written 8 months ago by
Alex Reynolds
35k
3
votes
6
replies
789
views
No genes mapped in clusterprofiler gseGO
R
clusterProfiler
gseGO
GSEA
5 months ago by
jon50250
• 0
3
votes
5
replies
1.4k
views
AlphaMissense Plugin VEP
Plugin
VEP
Alphamissense
updated 7 months ago by
Ram
43k • written 7 months ago by
Andrea
▴ 10
3
votes
6
replies
3.1k
views
Which of the 4 SureSelect Agilent BED files to use with GATK haplotype caller?
gatk
variant calling
sureselect
updated 10 months ago by
LeandroF.
• 0 • written 4.3 years ago by
curious
▴ 750
3
votes
4
replies
4.4k
views
Atypical volcano plot RNA-seq
volcano-plot
RNA-seq
deseq2
updated 9 months ago by
Ram
43k • written 5.5 years ago by
Teresa
▴ 20
3
votes
2
replies
206
views
Publish a Letter in higher impact vs Research article in lower impact
Article
Letter
Journal
updated 8 days ago by
ATpoint
82k • written 8 days ago by
jennyp0706
• 0
3
votes
7
replies
1.1k
views
Use giraffe in vg
giraffe
vg
updated 10 months ago by
Jordan M Eizenga
▴ 460 • written 10 months ago by
Michal
• 0
3
votes
7
replies
551
views
How does kallisto handle multi mapped reads?
kallisto
updated 12 weeks ago by
dsull
★ 6.0k • written 12 weeks ago by
bioinfo
▴ 150
3
votes
3
replies
319
views
How to format "I" and "D" in vcf version 4.2 for liftover analysis in GATK
gatk
vcf
liftover
updated 10 days ago by
Ram
43k • written 10 days ago by
Omics data mining
▴ 260
3
votes
2
replies
286
views
Gene reads all zero for each sample
R
salmon
DE
DESeq2
7 weeks ago by
DYLAN NICO
• 0
3
votes
6
replies
989
views
Embryo transcriptome
database
transcriptome
SRA
updated 11 months ago by
Basti
★ 2.0k • written 11 months ago by
firefox91
• 0
3
votes
3
replies
355
views
learning bioinformatics
course
learning
updated 3 months ago by
Ram
43k • written 3 months ago by
sevda
• 0
3
votes
4
replies
489
views
Discrepancy between the downloaded clinvar, dbNSFP and website
dbnsfp
clinvar
updated 5 months ago by
Ram
43k • written 5 months ago by
MAPK2
▴ 40
3
votes
5
replies
720
views
ATAC-Seq and featureCounts
ATAC-Seq
featureCounts
updated 4 months ago by
ATpoint
82k • written 4 months ago by
qudrat.nii
▴ 10
3
votes
3
replies
537
views
How to add value of column to barchart on hover?
R
ggplot
ggplotLy
updated 8 months ago by
Trivas
★ 1.8k • written 9 months ago by
Manuel
▴ 10
3
votes
4
replies
1.5k
views
fastPHASE -F provided to estimate haplotype frequencies, but no freqs in output
genomics
phasing
fastPHASE
updated 12 months ago by
Ram
43k • written 6.1 years ago by
lakemonster
▴ 10
3
votes
7
replies
1.5k
views
Find 3'UTRs for species
Assembly
alignment
updated 11 months ago by
Ram
43k • written 4.8 years ago by
Palgrave
▴ 110
3
votes
12
replies
612
views
struggle to get fasta files from ucsc goldenPath
ucsc
getfasta
fasta
7 weeks ago by
Lila M
★ 1.2k
3
votes
16
replies
12k
views
combining z-scores into a single z-score value
excel
R
statistics
updated 11 months ago by
Ram
43k • written 5.2 years ago by
Star
▴ 60
3
votes
2
replies
349
views
Illumina reads to be processed and prepared for reference genome alignment
genome
alignment
trimming
next-gen
Illumina
updated 3 months ago by
shelkmike
★ 1.2k • written 4 months ago by
Veselina
• 0
3
votes
3
replies
828
views
When counting ASVs in DADA2, does a hit/count only occur at 100% alignment percent identity?
metagenomics
qiime2
amplicon
16s
dada2
updated 9 months ago by
andres.firrincieli
3.6k • written 9 months ago by
O.rka
▴ 720
3
votes
2
replies
4.8k
views
How to plot a circular clustered heatmap with dendrogram
circular heatmap
updated 9 months ago by
logbio
▴ 30 • written 4.5 years ago by
The
▴ 180
3
votes
12
replies
3.1k
views
What is NCBI Gene ID, where to find it and how to convert to entrez ID?
RNA-Seq
updated 11 months ago by
Pegasus
▴ 100 • written 4.6 years ago by
mnazir
▴ 10
3
votes
2
replies
749
views
Scvelo vs Monocle3
monocle3
scvelo
7 months ago by
Chris
▴ 280
3
votes
5
replies
1.3k
views
kraken2 bacteria database 250GB+
metagenomics
16s
kraken2
kraken
updated 6 months ago by
GenoMax
142k • written 6 months ago by
10mz1
▴ 10
3
votes
12
replies
1.0k
views
why 99% reads failed to align in mir-seq analysis?
Fastqc
bowtie1
miRNA-seq
alignment
differential-expression-analysis
4 months ago by
mohammadhassanj
▴ 260
3
votes
3
replies
2.8k
views
WGCNA Labeled Heatmap
heatmap
wgcna
updated 7 months ago by
Ram
43k • written 2.7 years ago by
Anand
▴ 40
3
votes
2
replies
418
views
t-test by row
R
t-test
updated 6 months ago by
dthorbur
★ 2.0k • written 6 months ago by
sooni
▴ 20
3
votes
1
reply
543
views
Are there pipelines to analyze the Quality Controls for ATAC-seq and ChIP-seq data?
ChIP-seq
ATAC-seq
updated 10 months ago by
Papyrus
★ 2.9k • written 10 months ago by
Dan
▴ 180
3
votes
14
replies
6.1k
views
remote command line BLAST job ends in CPU error and gives MBEDTLS version mismatch
blastn
mbedtls
blast
linux
blast+
updated 4 months ago by
K.Gee
▴ 40 • written 3.1 years ago by
janneken0210
• 0
3
votes
7
replies
428
views
FastQC Quality per tile and per sequence behaving strange after using Cutadapt
fastqc
cutadapt
illumina
tile
paired-end
21 days ago by
salias
• 0
3
votes
8
replies
642
views
How to access TCGA samples that were treated with a specific drug?
TCGA
RNA-seq
14 days ago by
Qroid
▴ 40
3
votes
4
replies
781
views
Should we update time periods in a Bibliometric analysis even after completing it, if it's found to be generating biased results due to recent study?
review
bibliometric
offtopic
12 weeks ago by
Md. Al - Mustanjid
▴ 30
3
votes
4
replies
845
views
Downstream analysis with DEseq2 normalization
DEseq2
integration
6 months ago by
QX
• 0
3
votes
3
replies
565
views
Free/open source 23andme-like analysis
SNPs
genomics
NGS
VCF
updated 4 weeks ago by
swbarnes2
14k • written 4 weeks ago by
noodle
▴ 580
3
votes
6
replies
2.5k
views
How to adjust by multiple variables using ComBat-Seq?
CombatSeq
combat
rna-seq
sva
batch-effect
updated 4 weeks ago by
Ram
43k • written 22 months ago by
ev97
▴ 20
3
votes
2
replies
303
views
Inject haplotypes into rGFA?
Pangenome
3 months ago by
agd27
▴ 130
3
votes
5
replies
826
views
CHIPSEQ : Cut AND Run , DiffBind Parameters
Cut-Run
DiffBind
ChIP-seq
updated 5 months ago by
Rory Stark
★ 2.0k • written 5 months ago by
DINESHR
▴ 10
3
votes
7
replies
3.3k
views
vcf filter for FORMAT argument (DP/GQ/GQX > 30) multiple (380) vcf file
vcffilter
vcftools
sequencing
updated 10 months ago by
Ram
43k • written 4.2 years ago by
IndyDNA
▴ 10
3
votes
8
replies
947
views
Can these RNAseq runs be combined?
transcriptomics
replicates
RNAseq
updated 10 months ago by
GenoMax
142k • written 10 months ago by
mdrnao
• 0
3
votes
6
replies
3.3k
views
samtools sort not working when using multiple threads
samtools
bam
updated 11 months ago by
Ram
43k • written 2.3 years ago by
bio_elle
▴ 10
3
votes
5
replies
358
views
Generating mpileup file using samtools
mpileup
samtools
updated 17 days ago by
Joe
21k • written 18 days ago by
Ruqaiya
• 0
3
votes
8
replies
6.6k
views
7 follow
GATK genomicsDBimport intervals for WGS
gatk
genomicsdbimport
updated 18 days ago by
Sd
• 0 • written 5.1 years ago by
Nicolas Rosewick
11k
3
votes
1
reply
441
views
How to BLAST a FASTA sequence with unknown organism source
chrZ
BLAST
FASTA
updated 7 months ago by
Joe
21k • written 7 months ago by
Sd
• 0
3
votes
7
replies
1.4k
views
VG Giraffe multi-mapped reads and definition for MAPQ score
vg
9 months ago by
Hendricks27
• 0
1,000 results • Page
5 of 20
Recent Votes
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Comment: How to format "I" and "D" in vcf version 4.2 for liftover analysis in GATK
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The y axis represents the proportion of the total variance explained by each principal component. It's negative because the value (between…
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