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295
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How to remove cloning vector sequence from bacterial assembled genome?
assembly removal bacterial genome vector
updated 3 months ago by 134k • written 3 months ago by ▴ 70
3
votes
2
replies
645
views
How interpret question mark symbol strand column in GFF file?
GFF transcriptome
updated 9 months ago by 14k • written 9 months ago by ▴ 70
2
votes
1
reply
327
views
How to run phylogeny for genome assembly file?
phylogenetic tree Phylogeny assembly genome
updated 12 months ago by ★ 24k • written 12 months ago by ▴ 70
1
vote
2
replies
376
views
How to download all fungal virulence proteins from UniProt?
protein blast fungi uniprot
updated 6 months ago by 40k • written 13 months ago by ▴ 70
1
vote
1
reply
352
views
Differential Gene Expression of lncRNAs analysis from GENCODE reference file?
DEG lncRNA
updated 14 months ago by ★ 1.8k • written 14 months ago by ▴ 70
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0
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239
views
How to merge the pair end sample for GBS analysis in TASSEL software?
GBS plot GAPPIT
updated 17 months ago by 8.4k • written 17 months ago by ▴ 70
1
vote
1
reply
594
views
Subread FeatureCounts produces zero percent successfull alignment
zero subread featrureCounts alignment
updated 20 months ago by 8.4k • written 20 months ago by ▴ 70
0
votes
1
reply
713
views
Unable to download kraken2 database
databaase kraken2 metagenome
updated 21 months ago by 134k • written 21 months ago by ▴ 70
0
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0
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354
views
How to remove the isoform in the trasncript.fa file from salmon output?
transcript salmon denovo assembly
updated 21 months ago by 76k • written 21 months ago by ▴ 70
0
votes
1
reply
849
views
How to calculate phred score of fastq files?
linux phred fastq
updated 2.0 years ago by 134k • written 2.0 years ago by ▴ 70
0
votes
2
replies
717
views
How to download all the genome fasta file for plants?
standalone blast
updated 2.0 years ago by ★ 3.6k • written 2.0 years ago by ▴ 70
0
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0
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339
views
How to add enzyme details in Tassel pipeline?
GBS Tassel GBSEnzyme.java
updated 2.1 years ago by 5.8k • written 2.2 years ago by ▴ 70
4
votes
7
replies
2.5k
views
How to move the files from sub folder and sub-sub folders into one other folder?
bash
updated 6 months ago by 40k • written 2.2 years ago by ▴ 70
1
vote
1
reply
991
views
what is the meaning of --dta paremeter used in the Hisat2 alignment?
Hisat2
updated 2.2 years ago by 40k • written 2.2 years ago by ▴ 70
0
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4
replies
641
views
extract the ids and key values
extract grep
updated 2.2 years ago by 8.2k • written 2.2 years ago by ▴ 70
6
votes
6
replies
1.4k
views
How to generate GTF file from BLAST output?
GTF
2.3 years ago by mathavanbioinfo ▴ 70
0
votes
1
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566
views
Where to get the human mitochondiral reference genome?
GTF human genome mitochondiral
updated 2.3 years ago by 134k • written 2.3 years ago by ▴ 70
3
votes
4
replies
1.0k
views
Proportion of RNAseq reads mapping to rRNA, tRNA, mRNA, and intergenic or antisense regions of the genome?
GTF featureCounts NGS GFF
updated 2.3 years ago by 17k • written 2.3 years ago by ▴ 70
0
votes
1
reply
534
views
How to view large PPI network in STRING database?
PPI large network STRING
updated 2.3 years ago by 26k • written 2.3 years ago by ▴ 70
0
votes
3
replies
863
views
How can I get three letter organism code for cavia porcellus?
GO three KEGG
updated 2.4 years ago by 7.5k • written 2.4 years ago by ▴ 70
5
votes
3
replies
752
views
Where I can get the gtf file of antheraea mylitta
GTF
updated 2.4 years ago by 14k • written 2.4 years ago by ▴ 70
0
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0
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460
views
Extracting the genes associated drugs?
bank Drug
2.4 years ago by mathavanbioinfo ▴ 70
4
votes
5
replies
1.9k
views
How to download entire human protein sequences from RefSeq database hrough command line?
Refseq programming
updated 2.5 years ago by ★ 3.6k • written 2.5 years ago by ▴ 70
2
votes
2
replies
592
views
How to handle "perbase quality failed" issue?
RNA-Seq fastqc
2.8 years ago by mathavanbioinfo ▴ 70
4
votes
6
replies
2.5k
views
How to perform the lncRNA enrichment analysis?
lncRNA enrichment gene ontology
updated 2.8 years ago by ▴ 160 • written 2.9 years ago by ▴ 70
2
votes
2
replies
768
views
How to identify the 300 kb upstream and downstream genes of lncRNAs?
RNA-Seq lncRNA target genes upstream downstream
updated 2.8 years ago by 13k • written 2.8 years ago by ▴ 70
2
votes
1
reply
851
views
How to extract upstream and downstream of lncRNA in particular range?
RNA-Seq lncRNA hommer bed gtf
updated 2.8 years ago by ▴ 450 • written 2.8 years ago by ▴ 70
1
vote
1
reply
569
views
How to find the gene name and classification using Ensembl ID?
genome ensembl lncRNA
updated 2.9 years ago by 26k • written 2.9 years ago by ▴ 70
1
vote
2
replies
997
views
How create annotation file for WGCNA for RNA-Seq data?
RNA-Seq WGCNA Annotaion file
updated 3.2 years ago by 86k • written 3.2 years ago by ▴ 70
0
votes
1
reply
907
views
How to make annotation file for WGCNA analysis of RNA Seq data?
next-gen
updated 3.5 years ago by 86k • written 3.5 years ago by ▴ 70
0
votes
2
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856
views
DEGS analysis with DESeq2?
DESeq2 DEGs
updated 3.5 years ago by 20 • written 3.6 years ago by ▴ 70
0
votes
0
replies
777
views
lncRNA prediction using CPAT?
CPAT lncRNA
3.5 years ago by mathavanbioinfo ▴ 70
0
votes
1
reply
698
views
DEGs analysis with StringTie results?
StringTie DEGs DESeq2
3.6 years ago by mathavanbioinfo ▴ 70
2
votes
8
replies
2.0k
views
How to get GTF file for Rousettus_aegyptiacus?
StringTie GTF Assembly Rousettus aegyptiacus
3.7 years ago by mathavanbioinfo ▴ 70
0
votes
1
reply
811
views
How to construct draft genome of virus using Trinity de novo assembler?
RNA virus amplicons trintiy
3.7 years ago by mathavanbioinfo ▴ 70
0
votes
4
replies
1.7k
views
How to extract 3', 5' UTR sequences from genbank records using python, PERL and R code?
UTR
updated 3.7 years ago by ▴ 120 • written 3.7 years ago by ▴ 70
0
votes
2
replies
626
views
Is virus specific UTR prediction tool available?
UTR
3.8 years ago by mathavanbioinfo ▴ 70
0
votes
0
replies
474
views
Best assembler for WGS for RNA viruses?
WGS
3.8 years ago by mathavanbioinfo ▴ 70
2
votes
1
reply
706
views
How to create matrix for larger data set?
matrix RNA-Seq
updated 4.0 years ago by 76k • written 4.0 years ago by ▴ 70
0
votes
0
replies
826
views
What is the differences in index building by hisat with or without exon, splicing variant files?
lncRNA RNA-Seq hisat2
4.0 years ago by mathavanbioinfo ▴ 70
0
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0
replies
1.4k
views
How to convert agilent probe id into gene symbol in gene expression matrix?
agilent probe conversion
4.0 years ago by mathavanbioinfo ▴ 70
0
votes
0
replies
743
views
Novel lncRNA identification and quantification RNA seq?
RNA-Seq sequencing assembly hisat2 lncRNA
4.0 years ago by mathavanbioinfo ▴ 70
3
votes
21
replies
3.2k
views
Normalization agilent microarray data?
Microarray Normalization
updated 2.4 years ago by 40k • written 4.0 years ago by ▴ 70
1
vote
4
replies
1.4k
views
How to extract lncRNA from CPC2 output?
RNA-Seq Assembly next-gen
updated 4.0 years ago by ▴ 160 • written 4.0 years ago by ▴ 70
0
votes
4
replies
526
views
Is there any range for significant count of DEGs?
RNA-Seq rna-seq gene
4.0 years ago by mathavanbioinfo ▴ 70
0
votes
2
replies
471
views
Where I can download index files for Rousettus aegyptiacus?
genome rna-seq assembly
updated 4.1 years ago by ★ 3.6k • written 4.1 years ago by ▴ 70
0
votes
2
replies
646
views
How Interpret the hisat2 output?
ngs
updated 4.2 years ago by 3.2k • written 4.2 years ago by ▴ 70
0
votes
1
reply
720
views
What is acceptable optimal overall percentage of Hisat2?
rna-seq
4.3 years ago by mathavanbioinfo ▴ 70
0
votes
0
replies
1.2k
views
How to compare time series data of gene expression studies?
sequencing
5.7 years ago by mathavanbioinfo ▴ 70
0
votes
1
reply
1.3k
views
microarray data analysis GEO2R results?
gene
5.9 years ago by mathavanbioinfo ▴ 70
58 results • Page 1 of 2
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