Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
116,826 results • Page
1 of 2337
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
5
views
News:
Online course: Introduction to Deep Learning
DeepLearning
Python
ConvolutionalNeuralNetwork
MachineLearning
10 minutes ago by
carlopecoraro2
★ 2.5k
4
votes
5
replies
3.3k
views
How to compare compare two Sam files to check mapping
alignment
updated 58 minutes ago by
DavidStreid
▴ 90 • written 6.4 years ago by
madhu.9124
▴ 60
0
votes
2
replies
34
views
How/where can I get fungal mitogenome data for analysis?
fungal
mitogenome
updated 1 hour ago by
GenoMax
142k • written 1 hour ago by
madders73
• 0
1
vote
1
reply
98
views
How can I analyze normalized expression data?
DEseq2
RNA-seq
updated 1 hour ago by
Bastien Hervé
5.3k • written 5 hours ago by
mnx0723
• 0
3
votes
4
replies
3.9k
views
FarmCPU - how to explain the reported 'effect'?
gwas
updated 4 hours ago by
chloek88
• 0 • written 5.5 years ago by
Philipp Bayer
8.4k
795
votes
167
replies
143k
views
109 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 3 months ago by
Biostar
2.7k • written 7.4 years ago by
Istvan Albert
100k
0
votes
2
replies
96
views
RNA seq analysis
DESeq
RNA-seq
analysis
3 hours ago by
prifa
• 0
10
votes
3
replies
220
views
TFs and Gene databases
Transcription-factor
Target
Regulatory-Networks
updated 5 hours ago by
b.contreras.moreira
▴ 180 • written 23 hours ago by
ijarne
• 0
0
votes
0
replies
62
views
Chance for trained without experience
bio
updated 5 hours ago by
ATpoint
82k • written 5 hours ago by
shehab
• 0
1
vote
2
replies
108
views
How do I change the title font size in ViolinPlot (Seurat)
Seurat
Violin-Plot
ggplot2
patchwork
6 hours ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
51
views
Xenium multi sample data
batch
annotation
cell
Xenium
effect
6 hours ago by
Omics data mining
▴ 260
0
votes
2
replies
100
views
Phasing a mixture of two individuals' DNA with long reads
long-reads
phasing
5 hours ago by
njornet
▴ 20
0
votes
1
reply
84
views
Exploring Diet Effects in Single-Cell RNA Sequencing
batch_effect
scRNA
seurat
integration
updated 6 hours ago by
ATpoint
82k • written 7 hours ago by
Darya
• 0
0
votes
5
replies
154
views
Percentage coverage of reference genome by de novo genome
SAMtools
BWA
alignment
ddRAD
updated 4 hours ago by
Joe
21k • written 7 hours ago by
Lemonhope
• 0
0
votes
0
replies
65
views
Why does my Hi-C contact map show large regions making little to no contact?
BWA-MEM2
Hi-C
PretextMap
7 hours ago by
Winter
• 0
0
votes
5
replies
183
views
A question about reference genome for creating the consensus sequence
fasta
fa
cram
genome
1 hour ago by
me
• 0
2
votes
11
replies
2.6k
views
6 follow
CNVKIT - unable to produce scatter and diagram pdfs
cnvkit
updated 8 hours ago by
DGTool
• 0 • written 4.8 years ago by
ww22runner
▴ 60
0
votes
1
reply
69
views
Error in plotting PCA plot in seurat
PCA
single-cell
seurat
scRNA
RNA
updated 1 hour ago by
Bastien Hervé
5.3k • written 9 hours ago by
Sumeet
• 0
2
votes
1
reply
77
views
java out of memory error through beagle for imutation
beagle
java.out.of.memory
imputation
10 hours ago by
analyst
▴ 50
0
votes
0
replies
46
views
Generating .bed file and .map file for polyploid vcf file through plink
bed
polyploid
map
plink
10 hours ago by
analyst
▴ 50
0
votes
0
replies
43
views
Blog:
Introduction to The Complete Sequence of a Human Genome
biotech
10 hours ago by
usa.cd.genomics
• 0
0
votes
0
replies
43
views
Blog:
Overview of Nanopore Sequencing
biotech
10 hours ago by
usa.cd.genomics
• 0
0
votes
0
replies
60
views
meffil.snp.concordance
meffil
methylation
snp_concordance
15 hours ago by
kyj222637
• 0
0
votes
1
reply
71
views
PseudobulkExpression.Seurat error
Seurat
pseudo-bulk
updated 1 hour ago by
Bastien Hervé
5.3k • written 16 hours ago by
sooni
▴ 20
1
vote
5
replies
364
views
HCL database download
HCL
updated 14 hours ago by
Ram
43k • written 4 days ago by
sooni
▴ 20
0
votes
1
reply
211
views
barcode of TCR-sequencing
barcode
updated 17 hours ago by
mizraelson
▴ 60 • written 8 days ago by
yueli7
▴ 250
0
votes
2
replies
130
views
STAR aligner error
RNA-seq
STAR
slurm
7 hours ago by
M.
▴ 30
0
votes
0
replies
65
views
monocle 3-- Could not get node in small cluster
monocle3
18 hours ago by
synat.keam
▴ 100
0
votes
2
replies
119
views
Correlating Bulk Differential Expression with quantitative
Differential-Expression
DESeq2
1 hour ago by
Nicholas
• 0
1
vote
4
replies
314
views
Understanding STAR output (Aligned.out.sam file)
STAR
paired-end
read
21 hours ago by
heelpPlease
• 0
0
votes
6
replies
354
views
Applying the metacell2 algorithm using python
python
single-cell
scanpy
metacell2
8 hours ago by
JACKY
▴ 140
0
votes
3
replies
212
views
Filtering Multi-sample VCF file for all except one Genotype
variant
SNP
VCF
updated 20 hours ago by
Ram
43k • written 1 day ago by
schmince
• 0
0
votes
0
replies
83
views
News:
Online course. -Time series analysis and Forecasting in R
Time-Series
Forecasting
R
Stastics
1 day ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
433
views
HLA-HD tool for genomic imputation
genomics
imputation
bash
updated 18 hours ago by
Javier
• 0 • written 3 months ago by
fra.r.silvestro
▴ 10
0
votes
1
reply
111
views
ERROR: Duplicate entry "..." in sam header; samtools view: failed to add PG line to the header
sort.
SAMtools.
BAM.
SAM.
updated 1 day ago by
GenoMax
142k • written 1 day ago by
Sony
▴ 10
5
votes
5
replies
236
views
Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent
EGSEA
13 hours ago by
Chris
▴ 280
0
votes
1
reply
116
views
Differentail gene expression results
differential
expression
gene
rna-seq
Deseq2
updated 1 day ago by
ATpoint
82k • written 1 day ago by
ahmad.sajad4541
• 0
1
vote
5
replies
181
views
UMI-Tools knee-method has great influence on the results of white list
single-cell
whitelist
UMI
RNA
UMI-Tools
updated 1 day ago by
i.sudbery
19k • written 1 day ago by
Assa Yeroslaviz
★ 1.8k
1
vote
1
reply
134
views
student
epitranscriptomics
updated 1 day ago by
ATpoint
82k • written 1 day ago by
useriwa
• 0
0
votes
0
replies
88
views
Imputation of missing genotypes
panel
beagle
imputation
1 day ago by
analyst
▴ 50
0
votes
3
replies
150
views
trying to count a pattern in my fastq file using bbduk
java
bbduk
bbmap
fastq
updated 1 day ago by
GenoMax
142k • written 1 day ago by
Assa Yeroslaviz
★ 1.8k
6
votes
1
reply
133
views
Tutorial:
removeBatchEffect explained using base R linear models
limma
effects
batch
removebatcheffects
updated 1 day ago by
dariober
14k • written 1 day ago by
nhaus
▴ 350
2
votes
2
replies
148
views
Is therer any suggestions on mapping rate of WGBS data?
mapping
read
alignment
WGBS
14 hours ago by
Zeng Jingyu
▴ 60
1
vote
2
replies
232
views
News:
We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering
Spatial-transcriptomics
updated 1 day ago by
Weiwen
• 0 • written 2 days ago by
MICOS
▴ 10
0
votes
1
reply
111
views
Correlation Analysis
statistics
methylation
NGS
expression
updated 5 hours ago by
manaswwm
▴ 510 • written 1 day ago by
Researcher
▴ 30
1
vote
2
replies
156
views
Repeated testing/data mining in RNA Seq
repeated
RNA-Seq
mining
testing
data
1 day ago by
robert.flynn.21
• 0
1
vote
1
reply
196
views
Tool:
Converting Nebula Genomics Data to 23andMe Format
23andMe
Nebula
updated 1 day ago by
Michael
54k • written 1 day ago by
Guillermo
• 0
1
vote
5
replies
300
views
Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, Complexity, and Use Cases
fmindex
bwt
updated 7 hours ago by
Michael
54k • written 1 day ago by
qwertyuiop26
• 0
0
votes
1
reply
153
views
What is the proper way to identify the cell types of scRNAseq cluster?
scRNAseq
updated 1 day ago by
ATpoint
82k • written 2 days ago by
MAPK2
▴ 40
0
votes
2
replies
203
views
Job:
Bioinformatics Analyst - Laboratory Medicine and Pathology
job
updated 1 day ago by
Xiaofen
• 0 • written 1 day ago by
toddknutson
▴ 60
116,826 results • Page
1 of 2337
Recent Votes
Answer: Best way to compare two samples in a VCF file
A: How Do Heterozygotes And Somatic Mutations Manifest In Sequencing Projects
How Do Heterozygotes And Somatic Mutations Manifest In Sequencing Projects
A: How to download genome assemblies from NCBI with a list of GCA identifiers?
How to download genome assemblies from NCBI with a list of GCA identifiers?
Answer: Why is RNA-Seq library size not constant among samples?
Answer: TFs and Gene databases
Recent Locations •
All
Karolinska Institutet, Sweden,
2 minutes ago
United States,
3 minutes ago
USA,
4 minutes ago
United States,
4 minutes ago
United States,
5 minutes ago
Spain,
6 minutes ago
United Kingdom,
7 minutes ago
Recent Awards •
All
Popular Question
to
nhaus
▴ 350
Popular Question
to
Chris
▴ 280
Popular Question
to
chenl
▴ 10
Popular Question
to
User000
▴ 690
Scholar
to
analyst
▴ 50
Popular Question
to
ingerslev
• 0
Scholar
to
ATpoint
82k
Recent Replies
Answer: How to compare compare two Sam files to check mapping
by
DavidStreid
▴ 90
Curious if others have also benefited from Picard's [CompareSAMs][1] tool. Seems to do exactly what Madhu has requested. If the headers …
Answer: How/where can I get fungal mitogenome data for analysis?
by
alex.zaccaron
▴ 410
The best repository is probably NCBI Organelle Resources. You can search by taxonomy and download their mt genomes. Check it out for fungi…
Answer: How/where can I get fungal mitogenome data for analysis?
by
GenoMax
142k
Good place to start looking: https://www.ncbi.nlm.nih.gov/genome/organelle/ Mitochondrial genomes may also be included in full genomes so …
Comment: Correlating Bulk Differential Expression with quantitative
by
Nicholas
• 0
Thank you! I will give it a shot
Answer: How can I analyze normalized expression data?
by
Bastien Hervé
5.3k
This has been issued a dozen times before. Have a look at Limma package. https://support.bioconductor.org/p/126817/ https://support.bioco…
Comment: Error in plotting PCA plot in seurat
by
Bastien Hervé
5.3k
Without your code, it is impossible to make any statement. Please provide the code generating that issue. By googling, here is a [similar …
Comment: A question about reference genome for creating the consensus sequence
by
me
• 0
Hi, thanks for your information. I am a bit confused now. Does this mean the cram file already contained reference genome information? I in…
Comment: PseudobulkExpression.Seurat error
by
Bastien Hervé
5.3k
> None of the requested assays are present in the object Does the assay `originalexp` exist in your object `seurat_from_cds` ?
Comment: identifying transgene insertion site in WGS
by
Cameron.walker9900
• 0
When calling for SVs using gridds, should I use the reference genome that I added my transgene to, or should I use the unedited reference?
Comment: Question regarding WGCNA
by
deepak
• 0
Thank for the reply. I am running this code: # set a set of soft-thresholding powers powers = c(c(1:20), seq(from = 22, to=30, by=2)) # Ca…
Comment: RNA seq analysis
by
prifa
• 0
thank you for your reply Zepper, a bit clarification, I took all the samples from SRA data table, but yes from different lab and also diffe…
Comment: RNA seq analysis
by
Matthias Zepper
4.6k
That you have a varying number of replicates is not ideal ([see here why][1]), but manageable. See for example the [Specific experimental d…
Comment: Percentage coverage of reference genome by de novo genome
by
Joe
21k
OK, in that case it should be even easier as its just a single pairwise alignment, so the same advice holds.
Comment: FarmCPU - how to explain the reported 'effect'?
by
chloek88
• 0
Hi Phillip, Did you ever figure out the answer to this? I also have rMVP results with a column 'effect', values ranging from ~-1.4 to +1…
Comment: Soft-clipping read ends based on read group
by
chenl
▴ 10
Hi, Can you please share how did you clip both ends of the reads with ClipReads? Clipping form the start with `-CT "1-3"` for instance wor…
Traffic: 2685 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6