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121,971 results • Page
230 of 2440
Sort: Rank
Rank
Views
Votes
Replies
1
vote
4
replies
1.2k
views
non coding rna in hordeum
hordeum
incrna
rna
updated 2.2 years ago by
dthorbur
★ 3.1k • written 2.2 years ago by
martta95
▴ 10
0
votes
2
replies
1.8k
views
scRNAseq: thoughts on merging datasets generating from different version of 10x cellranger?
scRNAseq
Harmony
10x
Seurat
updated 2.2 years ago by
Rob
7.1k • written 2.2 years ago by
simplitia
▴ 130
9
votes
5
replies
1.4k
views
Prophage prediction tool
prophage
PHASTER
prediction
updated 2.2 years ago by
GenoMax
154k • written 2.2 years ago by
A_heath
▴ 170
0
votes
2
replies
1.0k
views
VarDictJava - teststrandbias.R
Variant-Calling
Mutation
Python
updated 2.2 years ago by
Ram
45k • written 2.2 years ago by
accdg2022
• 0
0
votes
1
reply
876
views
Bowtie - multiple alignments and seed length vs read length in miRNA mapping
miRNA
hsa-miR
Bowtie
updated 2.2 years ago by
Ram
45k • written 2.2 years ago by
MH85
▴ 20
4
votes
15
replies
3.1k
views
6 follow
How to allocate memory and CPU without SLURM in a linux cluster?
linux
HPC
updated 14 months ago by
Ram
45k • written 2.2 years ago by
anikcropscience
▴ 270
0
votes
0
replies
569
views
KEGG pathways mechanism analysis for non-model organisms
KEGGScape
DAVID
KEGGmapper
2.2 years ago by
humaira.amin96
• 0
0
votes
1
reply
747
views
vg giraffe unavailable perf events issue
vg
updated 2.2 years ago by
Jack Tierney
▴ 450 • written 2.2 years ago by
Suyeon
• 0
6
votes
5
replies
3.5k
views
Why does R1 read only have length of 26 with 10X library prepration?
Illumina
10X
updated 2.2 years ago by
dsull
★ 7.7k • written 2.2 years ago by
yuw926
▴ 10
0
votes
0
replies
506
views
Pileup of inner distance for PE reads
picard
samtools
pileup
RNA-seq
updated 2.2 years ago by
Ram
45k • written 2.2 years ago by
noodle
▴ 650
0
votes
2
replies
1.2k
views
Job:
Looking for people with few years of experience
deep-learning
updated 2.2 years ago by
Ram
45k • written 2.2 years ago by
adithyabhatl1998
• 0
0
votes
2
replies
1.2k
views
Require Help on Next Gen Sequencing of Spiders SRAs to find and indentify parasites.
ncbi
parasitology
Next-gen-sequencing
genetics
updated 2.2 years ago by
ababaian
▴ 50 • written 2.6 years ago by
Georgina
• 0
2
votes
6
replies
2.1k
views
How to find gene id and gene name after I know rsid
SNP
2.2 years ago by
Phylicia
▴ 10
2
votes
3
replies
2.7k
views
Would you recommend me a binning tool ?
MAGs
metagenomics
binning
updated 2.2 years ago by
Mensur Dlakic
★ 30k • written 2.2 years ago by
v.berriosfarias
▴ 140
1
vote
3
replies
2.7k
views
Converting dbSNP VCF to work with RefSeq chromossome ID
NCBI
dbSNP
RefSeq
updated 2.2 years ago by
onter
▴ 170 • written 2.6 years ago by
avelarbio46
▴ 30
0
votes
1
reply
518
views
how to assign counts while creating seurat object
Seurat
updated 2.2 years ago by
Ram
45k • written 2.2 years ago by
azramaqsood70
• 0
1
vote
3
replies
887
views
Nebula 30x read length distribution
Illumina
nebula.WGS
30x
updated 2.2 years ago by
GenoMax
154k • written 2.2 years ago by
berndmann
▴ 10
2
votes
3
replies
1.8k
views
Integration more than one million cell
scRNA-seq
single-cell
updated 21 months ago by
Kevin Blighe
89k • written 2.2 years ago by
Andy
▴ 120
0
votes
0
replies
607
views
What criteria are used to determine significant HMMER hits?
kegg
protein
kofamscan
annotation
metagenomics
2.2 years ago by
O.rka
▴ 750
1
vote
0
replies
583
views
Access age metadata for gnomAD, HGDP + 1KG dataset
vcf
gnomAD
1000genomes
updated 2.2 years ago by
Ram
45k • written 2.2 years ago by
miguellarrazlopezdenovales
▴ 20
0
votes
2
replies
945
views
How to detect unknown primer sequence
ngs
updated 2.2 years ago by
GenoMax
154k • written 2.2 years ago by
genetixs
▴ 20
1
vote
4
replies
1.4k
views
How to download/extract the same gene from all bacterial genomes on NCBI?
NCBI
updated 2.2 years ago by
GenoMax
154k • written 2.2 years ago by
tbayer
▴ 50
0
votes
0
replies
400
views
BubbleGUM for multi group comparison of gene set enrichment
gene-set-enrichment
bubbleGUM
updated 2.2 years ago by
Ram
45k • written 2.2 years ago by
sonaljoshi576
• 0
0
votes
4
replies
1.7k
views
DESeq2 model matrix not full rank, potentially confounding factors?
DESeq2
differential-expression
RNA-seq
updated 2.2 years ago by
Asaf
10k • written 2.2 years ago by
sg197
▴ 40
2
votes
1
reply
980
views
are transcripts in the Ensembl transcript release of human from certain cell types?
annotation
RNA-seq
updated 2.2 years ago by
manaswwm
▴ 570 • written 2.2 years ago by
xiaoleiusc
▴ 140
1
vote
2
replies
923
views
Downstream analysis of DEG for non-model organisms.
Axolotl
KEGG
GO
GSEA
2.2 years ago by
georgii.vdovin
• 0
0
votes
0
replies
642
views
birth– death (Yule) bifurcation process
evolution
Yule
bifurcation
2.2 years ago by
1509636876
▴ 10
2
votes
5
replies
1.5k
views
Help with htseq -count read counts
sam
gtf
RNA-seq
htseq
updated 2.2 years ago by
rfran010
★ 1.6k • written 2.2 years ago by
Juan Pablo
• 0
0
votes
0
replies
610
views
Beagle log not matching SNP data
Beagle
Imputation
2.2 years ago by
Gerard
• 0
0
votes
4
replies
1.2k
views
WGS sequencing data based proteomics analysis
workflow
UniProt
proteomics
WGS
RNA-Seq
updated 2.2 years ago by
biofalconch
★ 1.3k • written 2.2 years ago by
Assa Yeroslaviz
★ 1.9k
38
votes
12
replies
21k
views
8 follow
BEDOPS gtf2bed conversion error with Ensembl GTF
gtf2bed
ensembl
bedops
gtf
updated 19 months ago by
Alex Reynolds
36k • written 9.2 years ago by
bioinformatics.cancer
▴ 260
0
votes
4
replies
5.1k
views
Why do I need to sort and index gtf file for IGV?
igv
updated 2.2 years ago by
ATpoint
89k • written 2.2 years ago by
bioinfo
▴ 160
0
votes
0
replies
579
views
new miRNA classification
hordeum
miRNA
plant
classification
2.2 years ago by
martta95
▴ 10
0
votes
1
reply
699
views
Annovar
perltable
annovar
2.2 years ago by
bestone
▴ 30
0
votes
2
replies
889
views
Differential gene expression pattern changes while using nuclear/unspliced counts
model
kallisto
mixed
DEG
updated 2.2 years ago by
dsull
★ 7.7k • written 2.2 years ago by
akilabioinfo
▴ 10
0
votes
2
replies
1.3k
views
Modifying the vdb-config to increase timeout in a docker image
sra-tools
2.2 years ago by
1769mkc
★ 1.3k
0
votes
1
reply
880
views
Calculate melting temperature for BLAST output (DNA duplexes with mismatches and gaps)
blast
melting
temp
predictive
tm
updated 2.2 years ago by
Mensur Dlakic
★ 30k • written 2.2 years ago by
stoptime_armstrong
• 0
2
votes
3
replies
1.6k
views
correlation plot, FDR value
result
of
plot
correlation
p-value
updated 2.2 years ago by
i.sudbery
22k • written 2.2 years ago by
Rob
▴ 180
0
votes
2
replies
974
views
Expect heterozygous variant from reads
bam
align
igv
2.2 years ago by
pablo
▴ 350
3
votes
3
replies
922
views
Is it ok to do Indel realignment after removing subsets of reads?
Alignment
bam
Indel
updated 2.2 years ago by
Zhenyu Zhang
★ 1.3k • written 2.2 years ago by
DanielEB_fisk
▴ 20
3
votes
3
replies
1.2k
views
R code, package incompatibility
R
install
incompatible
package
updated 2.2 years ago by
ATpoint
89k • written 2.2 years ago by
Rob
▴ 180
2
votes
1
reply
607
views
How to find ortholog genes between three species (Homo sapiens, Mus Musculus, Rat Norvegicus)?
genes
ortholog
updated 2.2 years ago by
GenoMax
154k • written 2.2 years ago by
vinothkumarvtech2023
• 0
6
votes
7
replies
5.7k
views
Set up label.color with the same colors as the cluster colors in Seurat DimPlot() ?
seurat
scRNA-seq
2.2 years ago by
Ondina
▴ 100
3
votes
5
replies
2.8k
views
How to filter gene counts by keeping genes that have a count of of 10 or more in at least three samples
filtering
counts
gene
RNA-Seq
2.2 years ago by
BioinfoBee
• 0
2
votes
2
replies
1.6k
views
fisher's method for p-value combination in meta-analysis
Differential
p-value
fisher
expression
study
updated 2.2 years ago by
dariober
15k • written 2.2 years ago by
Nelo
▴ 20
6
votes
5
replies
1.5k
views
barcodes not show up in overrepresented sequences in FASTQC
ribo-seq
barcodes
updated 2.2 years ago by
GenoMax
154k • written 2.2 years ago by
e.r.zakiev
▴ 260
0
votes
1
reply
665
views
Trimming long-read seq reads?
trimming
sequencing
long-read
updated 2.2 years ago by
GenoMax
154k • written 2.2 years ago by
mendezmando23
• 0
3
votes
3
replies
3.8k
views
Leiden algorithm not working R studio scRNAseq
scRNAseq
R
leidenAlg
reticulate
updated 2.2 years ago by
jared.andrews07
★ 19k • written 2.2 years ago by
camillab.
▴ 160
3
votes
1
reply
968
views
where can I download blastp database for human?
blast
blastp
updated 2.2 years ago by
GenoMax
154k • written 2.2 years ago by
dec986
▴ 380
0
votes
0
replies
519
views
NAs for b-statistic and p-val from conumee::CNV.write(what = "segments")
conumee
CNV
R
2.2 years ago by
new_to_omics_in_zuri
• 0
121,971 results • Page
230 of 2440
Recent Votes
Which aligner is more suitable for ONT R10.4.1 Dorado-corrected reads: minimap2 or winnowmap?
A: What to use for a measure of distance between two sequences?
A: Feature Counts output interpretation
GATK BaseRecalibrator error: input files reference and features have incompatible contigs
Answer: How to create a consensus of a contig with samtools or bbmap?
Comment: Getting just fastqc.zip file?
alternate allele frequency and minor allele frequency
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DBScan
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Comment: Which aligner is more suitable for ONT R10.4.1 Dorado-corrected reads: minimap2
by
colindaven
8.0k
Good summary. I never tried winnowmap despite it's apparent advantages. If you have really repeat rich regions like centromeres that it may…
Comment: Need Help : JGI IMG Bulk Download
by
GenoMax
154k
Please post direct links to software you mention. Not sure why you are using LinkedIn short URL's. Historically downloads from JGI have be…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
pranavdatar01
• 0
This is the paper: https://doi.org/10.3389/fevo.2022.850817 (Genome of Varanus salvator macromaculatus (Asian Water Monitor) Reveals Adapta…
Comment: How to create a consensus of a contig with samtools or bbmap?
by
lieven.sterck
16k
great to hear! and yes, spades in stead of samtools makes much more sense :-)
Answer: Nextflow: How to format input tuple for STAR_ALIGN process with STAR index direc
by
Pierre Lindenbaum
166k
> align_ch returns tuples like [sample_name, [read1, read2]]. I want aligned_input tuples to look like [index_dir, sample1, read1, read2]. …
Comment: How to convert gff to Sequin format with gff3-to-tbl?
by
GenoMax
154k
So should your command not be (assuming these are the right files) ? $ gff3-to-tbl .../pharokka.gff .../Annotation/pharokka_cds_final…
Comment: How to convert gff to Sequin format with gff3-to-tbl?
by
marongiu.luigi
▴ 760
ADDENDUM: I have seen that pharokka already provides a tbl file; anyway, the question remains: if I needed to convert a gff to sequin with …
Comment: How to convert gff to Sequin format with gff3-to-tbl?
by
marongiu.luigi
▴ 760
Thank you, I have updated the title as suggested. But in the command, there a gff, a tsv, and a protein fasta. The list of files is: ``` $ …
Answer: How to convert gff to Sequin format?
by
GenoMax
154k
> $ gff3-to-tbl .../pharokka.gff .../Annotation/pharokka_cds_final_merged_output.tsv .../Consensus/reference.fasta .../Annotation/phanotate…
Comment: Errors with RSEM/bowtie2
by
GenoMax
154k
> Could this be an issue caused by the sequencing facility or just that they are in fact out of sync? We have no way to know. Did the sequ…
Comment: Differences between published differential gene expression results and own analy
by
vernonlim98
• 0
Have included the links to the papers I mentioned in another comment for reference!
Comment: Differences between published differential gene expression results and own analy
by
vernonlim98
• 0
These are the 2 papers I mentioned previously that used data other than raw counts for their analysis: https://onlinelibrary.wiley.com/doi/…
Comment: Collect COV file by BedCoverage
by
eshrakaali_p
• 0
Hello German , I am using clinCNV for WES and i faced the same error and this part of the error [1] "ERROR: your file with normal cove…
Comment: How to create a consensus of a contig with samtools or bbmap?
by
marongiu.luigi
▴ 760
sorry, I have mistaken samtools with spades... running `samtools view -h...` did the trick. Thank you.
Comment: Help with Ideathon
by
V K
• 0
Thank you for the response! Unfortunately this is completely independent and not part of a course. I was asking for some innovative ways to…
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