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122,013 results • Page 293 of 2441
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1.2k
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Do we have any disease specific SNVs database?
cancer mutation SNP SNV database
updated 2.6 years ago by 9.8k • written 2.6 years ago by • 0
2
votes
7
replies
1.8k
views
Full_join error
R dplyr
updated 2.4 years ago by 45k • written 2.6 years ago by • 0
1
vote
3
replies
2.7k
views
How Does Structure Viewer recognize Second Structure Element?
pymol protein-structure
updated 2.6 years ago by ▴ 380 • written 12.4 years ago by ▴ 20
0
votes
0
replies
642
views
File with rsid and genotype based on rsid list and WGS files (.bam, snp.vcf.gz...)
snp report mthfrgenetics rsid wgs
2.6 years ago by Marta • 0
1
vote
1
reply
812
views
Obtain information from a filtered VCF file
vcf variants
updated 2.6 years ago by 5.1k • written 2.6 years ago by • 0
0
votes
0
replies
595
views
Training gkm-svm sequence length
dnaseseq gkm-svm deltasvm
2.6 years ago by Filago ▴ 110
2
votes
2
replies
1.3k
views
Should I necessarily use cluster evaluation tools for my single cell dataset?
single-cell cluster-evaluation scclusteval
2.6 years ago by paria ▴ 110
1
vote
4
replies
7.9k
views
Processing Tandem Repeats Finder (Trf) Output For Downstream Motif Analysis
updated 2.6 years ago by ▴ 40 • written 12.4 years ago by ▴ 20
4
votes
4
replies
5.5k
views
TRF output to .gff file
next-gen
updated 2.6 years ago by ▴ 40 • written 11.4 years ago by ▴ 320
0
votes
0
replies
705
views
RNA editing analysis using REDItools
RNA editing
2.6 years ago by vil • 0
4
votes
2
replies
1.2k
views
How to quantify the reads of peaks?
ChIP-seq ATAC-seq
updated 2.6 years ago by ▴ 20 • written 2.6 years ago by ▴ 180
2
votes
6
replies
2.6k
views
BBMap's repair.sh swaps sequences between input files
repair.sh bbmap
2.6 years ago by Ram 45k
0
votes
3
replies
1.9k
views
cellchat probelm
cellchat R
2.6 years ago by Andy ▴ 120
0
votes
1
reply
1.0k
views
Trimming FASTQ files using Trimmomatic
trimmomatic polyA fastq sequencing tails
updated 2.6 years ago by 89k • written 2.6 years ago by ▴ 30
0
votes
3
replies
2.0k
views
I only have the tertiary structure of two proteins predicted by Alphafold. Can I make any docking with them?
protein-protein-interaction docking
updated 2.6 years ago by 154k • written 2.6 years ago by • 0
2
votes
12
replies
3.3k
views
How to retrieve a mRNA sequence from NCBI?
NCBI mRNA
updated 2.6 years ago by ▴ 70 • written 2.6 years ago by ▴ 70
0
votes
0
replies
973
views
Job: Principal Investigator-Professor: Machine learning-AI in human health
AI Machine-learning drug-discovery
updated 2.6 years ago by 45k • written 2.6 years ago by • 0
10
votes
15
replies
4.7k
views
Forum: How should reference genome fasta files be distributed by UCSC?
reference-genome fasta freeze ucsc-genome-browser
updated 2.4 years ago by 23k • written 2.6 years ago by ★ 1.8k
0
votes
0
replies
947
views
Unexpected discrepancy between Ka/Ks (seqinr) and dn/ds (ape)
dnds sequence-analysis KaKS R
2.6 years ago by Fabio Marroni ★ 3.0k
0
votes
0
replies
641
views
News: course MULTIVARIATE DATA ANALYSIS WITH R AND VEGAN
Vegan MULTIVARIATEDATAANALYSIS Statistics R
2.6 years ago by Physalia-courses ★ 2.7k
0
votes
4
replies
3.7k
views
SCRMshaw Enrich: Undefined symbol: Perl_xs_boot_epilog
Perl SCRMshaw CRMs software error
updated 2.6 years ago by • 0 • written 6.4 years ago by ▴ 10
4
votes
3
replies
2.1k
views
Chip-seq Analysis
chipseq diffbind IDR macs2 peaks
updated 2.6 years ago by ★ 2.1k • written 2.6 years ago by ▴ 20
0
votes
0
replies
627
views
dbSNP co-ordinates - 0 or 1 based?
dbSNP
updated 2.6 years ago by 45k • written 2.6 years ago by • 0
1
vote
7
replies
1.9k
views
Merge common elements in R
R
2.6 years ago by san96 ▴ 190
2
votes
2
replies
1.6k
views
Resources to learn illumina's GenomeStudio?
Genotype Illumina SNP Microarray Array
updated 2.6 years ago by 154k • written 3.8 years ago by ▴ 60
3
votes
4
replies
1.5k
views
Ensembl equivalent of refseq transcript fasta
ensembl transcriptome refseq
2.6 years ago by Jalil Sharif ▴ 80
2
votes
2
replies
1.9k
views
BCLConvert4.0_demultiplexing fastq with i5 index barcodes less than hamming distance of 3
index hamming-distance BCLConvert i5
updated 2.6 years ago by 45k • written 2.6 years ago by ▴ 10
0
votes
1
reply
742
views
UniProt id to MSA
MSA
updated 2.6 years ago by 154k • written 2.6 years ago by • 0
3
votes
5
replies
1.7k
views
Can someone help me with searching overlapping values between two files?
bash grep awk MATCH
updated 2.6 years ago by 166k • written 2.6 years ago by • 0
4
votes
6
replies
3.0k
views
Removing a DOT after each sequence
sequence bioawk
updated 2.6 years ago by ▴ 930 • written 5.0 years ago by ▴ 440
1
vote
2
replies
4.6k
views
Error in R: System command 'Rcmd.exe' failed
CrossTalkeR package R Rcmd
2.6 years ago by joonhong kwon ▴ 70
0
votes
2
replies
945
views
low featurecounts assignment rate despite of good mapping with STAR
featurecounts RNA sequencing STAR
updated 2.6 years ago by 154k • written 2.6 years ago by • 0
3
votes
3
replies
5.7k
views
Using LiftOver to change genomic build
hg18 genome-build LiftOver hg38
updated 2.6 years ago by 8.0k • written 2.6 years ago by ▴ 10
2
votes
7
replies
13k
views
making a BIGWIG from BAM file
bam samtools bigwig
updated 2.6 years ago by 89k • written 2.6 years ago by ▴ 20
0
votes
0
replies
614
views
miRNA KD/KO data in public domain
public-data miRNA
2.6 years ago by Chirag Parsania ★ 2.0k
0
votes
0
replies
678
views
TCGA, TCGAbiolink, gene expression
data RNA-seq count STAR
2.6 years ago by Rob ▴ 180
0
votes
0
replies
527
views
Comparing 2 groups of bacterial genomes
fasta pacbio Bacteria BLAST
updated 2.6 years ago by 45k • written 2.6 years ago by • 0
0
votes
0
replies
969
views
Job: PhD Position to Develop Machine Learning Methods for Microbiome Analysis
microbiome machine-learning
updated 2.6 years ago by 45k • written 2.6 years ago by • 0
0
votes
0
replies
777
views
Intron retention gene expression using salmon
salmon intron-retention
updated 2.6 years ago by 45k • written 2.6 years ago by ▴ 60
2
votes
3
replies
1.3k
views
HISAT2 paired end multiple files loop error
hisat2 RNA-seq
updated 2.6 years ago by 154k • written 2.6 years ago by • 0
12
votes
3
replies
1.9k
views
Can FPKM data sets be of any use or are they trash?
FPKM RNA-seq
updated 2.6 years ago by 22k • written 2.6 years ago by ▴ 30
8
votes
4
replies
1.9k
views
Forum: Implementing FAIR data principles to a bioinformatics lab
data
updated 2.6 years ago by 23k • written 2.6 years ago by ★ 1.5k
0
votes
5
replies
1.5k
views
ANNOVAR is not reading input data
ANNOVAR
updated 2.6 years ago by 45k • written 2.6 years ago by ▴ 10
11
votes
9
replies
3.9k
views
Ribo-Seq Analysis
ribo-seq ribosome profiling
2.6 years ago by phoenix.sum13 ▴ 90
7
votes
6
replies
12k
views
Stack several manhattan plots
manhattan qqman R
updated 2.6 years ago by • 0 • written 8.0 years ago by ▴ 40
2
votes
7
replies
2.6k
views
E-utilities pipe to download different genomes
ncbi fasta wgs
updated 2.6 years ago by 45k • written 2.6 years ago by ▴ 20
1
vote
1
reply
876
views
Hordeum genes annotation
protein hordeum annotation genes
updated 2.6 years ago by 45k • written 2.6 years ago by ▴ 10
0
votes
3
replies
1.1k
views
HSP of length 0
alignment blastp
updated 2.6 years ago by 154k • written 2.6 years ago by ▴ 140
0
votes
0
replies
578
views
No genotype likelihoods when doing SNP calling using bcftools
bcftools variant-calling
updated 2.6 years ago by 45k • written 2.6 years ago by • 0
0
votes
5
replies
1.7k
views
Bedtools multicov output file error
multicov coverage bedtools
2.6 years ago by RK • 0
122,013 results • Page 293 of 2441
Recent Votes
Answer: 1 vs 1 DEG analysis in scrna seq data
Comment: installation of package ‘DESeq2’ had non-zero exit status
Answer: Recommendations for 200 SNP markers genotyping
Comment: Reasonable number of SNPs in a bacterial genome.
The Biostar Handbook. A bioinformatics e-book for beginners.
Genome Assembly QC from BAM files
Answer: Scaling RNA-Seq data before clustering?
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Recent Replies
Answer: 1 vs 1 DEG analysis in scrna seq data by ATpoint 89k
The only option you have is to treat every single cell as a replicate. That has the obvious downside that any effect can be a donor-unique …
Answer: GUI commercial software for 10x single cell gene expression analysis by firestar ★ 1.7k
An open-source option: [kana](https://www.kanaverse.org/kana/).
Comment: Brave: Bioinformatics Reactive Analysis and Visualization Engine by Edward • 0
Yes, we plan to make English the primary language of the Brave UI.
Comment: Reasonable number of SNPs in a bacterial genome. by michael.ante ★ 4.0k
If your bacterial species is a (human) pathogen, you might want to check outbreak analysis papers of that species. In general, you find t…
Comment: hisat2 error-Paired end reads not equal or lack of RAM/disk space? by lieven.sterck 16k
ok, missed that ... in any case that should not happen indeed. How did you determine that the files are not equal? I can indeed also see t…
Comment: Brave: Bioinformatics Reactive Analysis and Visualization Engine by Ram 45k
Do you have a plan to make an English version of the UI?
Comment: Brave: Bioinformatics Reactive Analysis and Visualization Engine by Edward • 0
This can visualize the parameters of the generated workflow, software, and scripts, and manage the docker process of the script, software, …
Comment: Brave: Bioinformatics Reactive Analysis and Visualization Engine by ATpoint 89k
Can you summarize in one sentence what the use case is? Is this a workflow manager?
Comment: Pseudogene - scarce info by ATpoint 89k
This reminds me strongly on my "masters" courses (doesn't deserve that name tbf). "Here is some poorly-described project with little to no …
Answer: scVI vs Harmony, which is better for cell type based clustering in brain tissue? by ATpoint 89k
There is no "better" is my experience. It always depends on the dataset. Try both and integrate your biological knowledge to decide which m…
Comment: DESeq2 on metagenome KO counts by Aleksandra ▴ 190
I just wrote that I misunderstood your initial question.
Comment: DESeq2 on metagenome KO counts by Aleksandra ▴ 190
What exactly did I not get?
Comment: Interpreting genomic features distribution for CUT&RUN peaks by rfran010 ★ 1.7k
If I understand correctly, you see increased signal at TSS sites compared to control (taller peaks in browser). However, 92% of the 450 siS…
Comment: combine VCF from diploid reference/haplotypes for the same sample by cmdcolin ★ 4.3k
this question is a little similar to your previous question (https://www.biostars.org/p/9614638/). just as added info, here is a tool calle…
Comment: hisat2 error-Paired end reads not equal or lack of RAM/disk space? by aj123 ▴ 130
As mentioned above, I just got the raw fastq files from the ftp site listed.
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